Result : Q83G03
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | AE014184.1 |
| Organism | Tropheryma whipplei (strain Twist) (Whipple's bacillus) |
| Left | 640554 |
| Right | 640751 |
| Strand | - |
| Nucleotide Sequence | GTGTTGGGGCTAGCAGTGACACGGCTTAGAATTACCCAGATTCGATCTTCAGTTGGTGAGAAGCAGAATAAGCGTGGCTCTCTTCGCAGTTTGCGCCTGAGACATGTTGGTGATACTGTCGACTGTGATGATACCCCTCAAGTGAGAGGGTACATCAGTGCATGCAGTCATCTTGTGAGAGTTGAGGAGATTCATTGA |
| Sequence | MLGLAVTRLRITQIRSSVGEKQNKRGSLRSLRLRHVGDTVDCDDTPQVRGYISACSHLVRVEEIH |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 12902375 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q83G03 |
| ORF Length (Amino Acid) | 65 |
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| Conservation Analysis |
No. of Species: 93
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 640554 | 640751 | - | NC_004572.3 | Tropheryma whipplei str. Twist |
| 2 | 1252557 | 1252742 | - | NZ_AP017457.1 | Aurantimicrobium minutum |
| 3 | 1378580 | 1378765 | - | NZ_CP049253.1 | Microbacterium amylolyticum |
| 4 | 996401 | 996568 | + | NZ_CP017146.1 | Marisediminicola antarctica |
| 5 | 951976 | 952158 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 6 | 872254 | 872421 | - | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 7 | 635359 | 635556 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 8 | 638828 | 639013 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 9 | 4465191 | 4465373 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 10 | 226624 | 226809 | + | NZ_CP058670.1 | Chryseoglobus indicus |
| 11 | 2769612 | 2769797 | - | NZ_CP031425.1 | Microbacterium foliorum |
| 12 | 2542974 | 2543162 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 13 | 1536354 | 1536521 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 14 | 654933 | 655100 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 15 | 681012 | 681179 | - | NZ_CP061344.1 | Microbacterium hominis |
| 16 | 632761 | 632928 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 17 | 407569 | 407754 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 18 | 654826 | 655008 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 19 | 974441 | 974608 | - | NZ_CP049255.1 | Microbacterium endophyticum |
| 20 | 1220342 | 1220524 | + | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 21 | 3061507 | 3061689 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 22 | 3067025 | 3067210 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 23 | 579798 | 579965 | + | NZ_CP038266.1 | Microbacterium wangchenii |
| 24 | 1004285 | 1004458 | + | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 25 | 2390193 | 2390360 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 26 | 489224 | 489382 | + | NZ_CP031423.1 | Microbacterium lemovicicum |
| 27 | 2422800 | 2422967 | - | NZ_CP028913.1 | Agromyces badenianii |
| 28 | 555323 | 555490 | + | NZ_CP044232.1 | Microbacterium lushaniae |
| 29 | 648803 | 648985 | + | NZ_CP016353.1 | Prauserella marina |
| 30 | 2069714 | 2069896 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 31 | 4381490 | 4381672 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 32 | 6587580 | 6587762 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 33 | 2918449 | 2918616 | - | NZ_CP018762.1 | Microbacterium aurum |
| 34 | 498401 | 498568 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 35 | 2901252 | 2901434 | - | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 36 | 663636 | 663818 | + | NC_017093.1 | Actinoplanes missouriensis 431 |
| 37 | 5777349 | 5777555 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 38 | 2187416 | 2187598 | - | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 39 | 4219135 | 4219317 | + | NZ_CP061725.1 | Micromonospora craniellae |
| 40 | 4903434 | 4903616 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 41 | 3411220 | 3411387 | - | NZ_CP013979.1 | Agromyces aureus |
| 42 | 1025913 | 1026089 | + | NZ_CP049933.1 | Leucobacter coleopterorum |
| 43 | 6224054 | 6224230 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 44 | 10397600 | 10397770 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 45 | 1579418 | 1579600 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 46 | 1029405 | 1029587 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 47 | 1090732 | 1090914 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 48 | 428095 | 428277 | + | NZ_CP060789.1 | Tessaracoccus defluvii |
| 49 | 407481 | 407663 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 50 | 1873489 | 1873653 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 51 | 2404903 | 2405076 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 52 | 869273 | 869467 | - | NZ_CP060716.1 | Leucobacter denitrificans |
| 53 | 2148677 | 2148859 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 54 | 3277335 | 3277517 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 55 | 8746965 | 8747126 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 56 | 326138 | 326320 | + | NZ_CP028129.1 | Rathayibacter rathayi |
| 57 | 1169214 | 1169399 | + | NC_008278.1 | Frankia alni ACN14a |
| 58 | 652433 | 652615 | + | NZ_CP015515.1 | Rathayibacter tritici |
| 59 | 607894 | 608076 | - | NZ_CP019607.1 | Tessaracoccus flavescens |
| 60 | 3460738 | 3460920 | + | NZ_CP030033.1 | Cryobacterium soli |
| 61 | 3270682 | 3270864 | - | NZ_CP016282.1 | Cryobacterium arcticum |
| 62 | 5770418 | 5770594 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 63 | 3264242 | 3264418 | + | NZ_CP049863.1 | Leucobacter viscericola |
| 64 | 1338178 | 1338354 | + | NZ_CP049934.1 | Leucobacter insecticola |
| 65 | 2311915 | 2312097 | + | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 66 | 689230 | 689400 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 67 | 11099123 | 11099308 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 68 | 3492644 | 3492823 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 69 | 5541635 | 5541799 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 70 | 2546643 | 2546825 | - | NZ_CP047186.1 | Rathayibacter tanaceti |
| 71 | 686773 | 686958 | + | NC_007777.1 | Frankia casuarinae |
| 72 | 7752507 | 7752677 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 73 | 5986100 | 5986279 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 74 | 857683 | 857847 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 75 | 877506 | 877694 | - | NZ_CP035806.1 | Leucobacter triazinivorans |
| 76 | 879328 | 879516 | + | NZ_CP035037.1 | Leucobacter muris |
| 77 | 971425 | 971598 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 78 | 1726965 | 1727147 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 79 | 2643604 | 2643786 | + | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 80 | 301057 | 301224 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 81 | 4037508 | 4037687 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 82 | 621863 | 622027 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 83 | 1122031 | 1122213 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 84 | 5494139 | 5494321 | + | NZ_CP033972.1 | Gordonia insulae |
| 85 | 1007319 | 1007495 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 86 | 4267149 | 4267361 | - | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 87 | 2719431 | 2719613 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 88 | 2981697 | 2981873 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 89 | 2573992 | 2574174 | - | NZ_CP015961.1 | Dietzia timorensis |
| 90 | 678364 | 678573 | + | NZ_CP056080.1 | Rothia nasimurium |
| 91 | 7130626 | 7130808 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 92 | 368886 | 369071 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 93 | 5209091 | 5209273 | + | NZ_CP023688.1 | Streptomyces rimosus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP017457.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00406.24 | 0.88 | 82 | 2027.0 | same-strand | Adenylate kinase |
| 2 | PF13207.8 | 0.88 | 82 | 2027.0 | same-strand | AAA domain |
| 3 | PF13238.8 | 0.81 | 75 | 2024 | same-strand | AAA domain |
| 4 | PF00344.22 | 0.89 | 83 | 705 | same-strand | SecY |
| 5 | PF00828.21 | 0.99 | 92 | 0.0 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 6 | PF00333.22 | 1.0 | 93 | 3 | same-strand | Ribosomal protein S5, N-terminal domain |
| 7 | PF03719.17 | 1.0 | 93 | 3 | same-strand | Ribosomal protein S5, C-terminal domain |
| 8 | PF00861.24 | 1.0 | 93 | 695 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 9 | PF00347.25 | 1.0 | 93 | 1078 | same-strand | Ribosomal protein L6 |
| 10 | PF00410.21 | 1.0 | 93 | 1624 | same-strand | Ribosomal protein S8 |
| 11 | PF00557.26 | 0.83 | 77 | 2693 | same-strand | Metallopeptidase family M24 |
| 12 | PF13671.8 | 0.65 | 60 | 2035.5 | same-strand | AAA domain |
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