* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00528.24
|
1.0
|
6
|
4361.5
|
opposite-strand
|
Binding-protein-dependent transport system inner membrane component
|
2
|
PF01547.27
|
1.0
|
6
|
3035.5
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
3
|
PF13416.8
|
1.0
|
6
|
3035.5
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
4
|
PF01380.24
|
1.0
|
6
|
1968.5
|
opposite-strand
|
SIS domain
|
5
|
PF01541.26
|
1.0
|
6
|
1379.5
|
opposite-strand
|
GIY-YIG catalytic domain
|
6
|
PF01266.26
|
1.0
|
6
|
159.0
|
opposite-strand
|
FAD dependent oxidoreductase
|
7
|
PF01458.19
|
0.83
|
5
|
1381
|
opposite-strand
|
SUF system FeS cluster assembly, SufBD
|
8
|
PF01592.18
|
0.83
|
5
|
2799
|
opposite-strand
|
NifU-like N terminal domain
|
9
|
PF00266.21
|
0.83
|
5
|
3232
|
opposite-strand
|
Aminotransferase class-V
|
++ More..