Result : A0LI55
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP000478.1 |
| Organism | Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) |
| Left | 1758179 |
| Right | 1758433 |
| Strand | + |
| Nucleotide Sequence | GTGGCGAAAAAGAAAAGCGACCAATTCGAAGAGGCACTAAAGAAACTGCAGGACATTGTCGAAAAACTGGAACGGGGGGACATGCCCCTGGAGGAGGCGATGGAAGCCTTCTCCGAGGGCATTCGCCTCGCGCGGGTTTGCCACGGGAAACTCGAGGAGGCGGAACGGAAAGTCCGGATACTGCTCAAGGAACAGGAGGGAGACTGGACGACCTCGCCGTTTGAACCCGCCTCCGGAGAACCTCCGGGAGGTTGA |
| Sequence | MAKKKSDQFEEALKKLQDIVEKLERGDMPLEEAMEAFSEGIRLARVCHGKLEEAERKVRILLKEQEGDWTTSPFEPASGEPPGG |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | A0LI55 |
| ORF Length (Amino Acid) | 84 |
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| Conservation Analysis |
No. of Species: 40
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1758179 | 1758433 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 2 | 1548279 | 1548539 | - | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 3 | 4262525 | 4262746 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 4 | 1453148 | 1453369 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 5 | 3324064 | 3324285 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 6 | 4250334 | 4250567 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 7 | 3411321 | 3411530 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 8 | 3351201 | 3351434 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 9 | 1116510 | 1116743 | + | NZ_CP034118.1 | Staphylospora marina |
| 10 | 1164078 | 1164299 | + | NC_012483.1 | Acidobacterium capsulatum ATCC 51196 |
| 11 | 5096721 | 5096963 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 12 | 2572696 | 2572959 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 13 | 3738972 | 3739214 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 14 | 1858566 | 1858805 | + | NC_007759.1 | Syntrophus aciditrophicus SB |
| 15 | 1001159 | 1001401 | - | NC_015968.1 | Enterobacter soli |
| 16 | 1046109 | 1046351 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 17 | 1004693 | 1004935 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 18 | 162961 | 163203 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 19 | 1245593 | 1245835 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 20 | 3555381 | 3555623 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 21 | 3313772 | 3314014 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 22 | 1656049 | 1656291 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 23 | 370473 | 370715 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 24 | 441101 | 441343 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 25 | 507155 | 507397 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 26 | 454919 | 455161 | - | NZ_AP014857.1 | Escherichia albertii |
| 27 | 2211056 | 2211298 | + | NZ_CP038469.1 | Citrobacter tructae |
| 28 | 1083047 | 1083289 | - | NZ_LR134340.1 | Escherichia marmotae |
| 29 | 2952690 | 2952938 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 30 | 1050494 | 1050712 | - | NZ_CP065534.1 | Lonsdalea populi |
| 31 | 2541387 | 2541629 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 32 | 4040041 | 4040283 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 33 | 2107652 | 2107894 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 34 | 2763578 | 2763820 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 35 | 987800 | 988042 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 36 | 1170720 | 1170962 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 37 | 4307876 | 4308118 | + | NZ_CP054254.1 | Klebsiella variicola |
| 38 | 1175113 | 1175355 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 39 | 3940529 | 3940771 | - | NZ_CP033744.1 | Citrobacter freundii |
| 40 | 4430424 | 4430666 | + | NZ_CP050508.1 | Raoultella terrigena |
| 41 | 4728470 | 4728712 | + | NZ_CP060111.1 | Klebsiella michiganensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013990.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00348.19 | 0.97 | 39 | 1.0 | same-strand | Polyprenyl synthetase |
| 2 | PF13292.8 | 0.97 | 39 | 925.0 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.97 | 39 | 925 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.97 | 39 | 925 | same-strand | Transketolase, C-terminal domain |
| 5 | PF04461.15 | 0.65 | 26 | 3370 | opposite-strand | Protein of unknown function (DUF520) |
| 6 | PF08546.13 | 0.65 | 26 | 2303 | same-strand | Ketopantoate reductase PanE/ApbA C terminal |
| 7 | PF02558.18 | 0.65 | 26 | 2303 | same-strand | Ketopantoate reductase PanE/ApbA |
| 8 | PF01965.26 | 0.65 | 26 | 1750 | same-strand | DJ-1/PfpI family |
| 9 | PF02568.16 | 0.68 | 27 | 202.0 | opposite-strand | Thiamine biosynthesis protein (ThiI) |
| 10 | PF02926.19 | 0.68 | 27 | 202.0 | opposite-strand | THUMP domain |
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