Result : Q7WDJ6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative membrane protein insertion efficiency factor |
| NCBI Accession ID | BX640452.1 |
| Organism | Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus) |
| Left | 96777 |
| Right | 97049 |
| Strand | + |
| Nucleotide Sequence | ATGATCAGGAGACTGCTTATCGCCCCGATCCGGTTTTACCGGTACTTCCTCAGCCCCTGGGTGGGCCGGCAGTGCCGCTTCACCCCGACTTGCTCGGCCTACGCCATCGAAGCCATTGAACGTCATGGCGCATGGCGCGGTCTATGGTTGGCGGCGCGCCGTATCGGCCGCTGCCACCCGTGGTCGCCGGGCGGATACGACCCCGTACCACCCGGCCACGGCGCCGGCGCGCAGGCCTGCTGCGCGCATCGCCACCGCACCGAACCCGATTGA |
| Sequence | MIRRLLIAPIRFYRYFLSPWVGRQCRFTPTCSAYAIEAIERHGAWRGLWLAARRIGRCHPWSPGGYDPVPPGHGAGAQACCAHRHRTEPD |
| Source of smORF | Swiss-Prot |
| Function | Could be involved in insertion of integral membrane proteins into the membrane. {ECO:0000255|HAMAP-Rule:MF_00386}. |
| Pubmed ID | 12910271 |
| Domain | CDD:412414 |
| Functional Category | Others |
| Uniprot ID | Q7WDJ6 |
| ORF Length (Amino Acid) | 90 |
++ More..
| Conservation Analysis |
No. of Species: 150
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 647793 | 648065 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 2 | 4057022 | 4057294 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 3 | 5198486 | 5198758 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 4 | 6427557 | 6427829 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 5 | 4998341 | 4998634 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 6 | 2538664 | 2538939 | - | NZ_LR134302.1 | Achromobacter spanius |
| 7 | 3712412 | 3712696 | + | NC_010645.1 | Bordetella avium 197N |
| 8 | 3668710 | 3668997 | + | NZ_CP043146.1 | Bordetella holmesii |
| 9 | 5286857 | 5287129 | - | NC_010170.1 | Bordetella petrii |
| 10 | 5965712 | 5965984 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 11 | 5834394 | 5834666 | - | NZ_CP016172.1 | Bordetella flabilis |
| 12 | 859 | 1113 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 13 | 6088130 | 6088375 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 14 | 2993951 | 2994205 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 15 | 6055630 | 6055875 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 16 | 4542239 | 4542526 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 17 | 6182343 | 6182588 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 18 | 4769122 | 4769367 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 19 | 2220472 | 2220699 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 20 | 3106856 | 3107110 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 21 | 2090959 | 2091195 | - | NZ_CP033433.1 | Cohnella candidum |
| 22 | 149456 | 149701 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 23 | 4653160 | 4653423 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 24 | 260505 | 260765 | - | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 25 | 5615139 | 5615369 | - | NZ_CP065748.1 | Delftia lacustris |
| 26 | 2239154 | 2239417 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 27 | 1798102 | 1798344 | + | NZ_CP024422.1 | Paracoccus yeei |
| 28 | 1089566 | 1089808 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 29 | 343829 | 344068 | - | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 30 | 1314435 | 1314677 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 31 | 6094175 | 6094423 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 32 | 4570733 | 4570990 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 33 | 1015278 | 1015529 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 34 | 2406778 | 2407062 | + | NZ_CP029843.1 | Lysobacter maris |
| 35 | 435563 | 435808 | - | NZ_CP016364.1 | Phaeobacter porticola |
| 36 | 3029494 | 3029760 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 37 | 4821722 | 4821946 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 38 | 4300 | 4560 | + | NZ_CP054626.1 | Cupriavidus gilardii |
| 39 | 3813865 | 3814134 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 40 | 2081157 | 2081450 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 41 | 2238541 | 2238801 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 42 | 147968 | 148198 | - | NZ_CP038254.1 | Legionella israelensis |
| 43 | 31338 | 31598 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 44 | 3244795 | 3245052 | - | NZ_CP072793.1 | Thiothrix unzii |
| 45 | 1738649 | 1738873 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 46 | 391866 | 392117 | - | NZ_CP013341.1 | Nitrosomonas ureae |
| 47 | 3778308 | 3778544 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 48 | 388623 | 388883 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 49 | 3629756 | 3629998 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 50 | 51580 | 51798 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 51 | 446826 | 447044 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 52 | 2141624 | 2141926 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 53 | 3915123 | 3915407 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 54 | 608461 | 608691 | - | NZ_CP042909.1 | Thermosulfurimonas marina |
| 55 | 915556 | 915795 | - | NZ_CP015067.2 | Elizabethkingia anophelis |
| 56 | 2430509 | 2430733 | - | NZ_CP015093.1 | Salipiger abyssi |
| 57 | 505450 | 505680 | + | NZ_CP060711.1 | Thermomonas brevis |
| 58 | 3952649 | 3952912 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 59 | 2592886 | 2593137 | + | NC_019793.1 | Deinococcus peraridilitoris DSM 19664 |
| 60 | 5602841 | 5603092 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 61 | 1702908 | 1703147 | + | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 62 | 3791021 | 3791269 | + | NZ_CP011129.1 | Lysobacter antibioticus |
| 63 | 2868097 | 2868342 | - | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 64 | 6336367 | 6336615 | - | NZ_CP028324.1 | Massilia armeniaca |
| 65 | 4690685 | 4690942 | + | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 66 | 4180326 | 4180589 | - | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 67 | 652569 | 652808 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 68 | 3716768 | 3717010 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 69 | 2244913 | 2245134 | - | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 70 | 5698562 | 5698810 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 71 | 1747876 | 1748103 | + | NZ_CP047361.1 | Macrococcus canis |
| 72 | 3643114 | 3643335 | - | NZ_CP019038.1 | Massilia putida |
| 73 | 857676 | 857915 | + | NZ_CP041025.1 | Paremcibacter congregatus |
| 74 | 3064104 | 3064382 | + | NZ_CP034437.1 | Paenibacillus albus |
| 75 | 2833564 | 2833797 | - | NZ_AP017372.2 | Halorhodospira halochloris |
| 76 | 1293463 | 1293684 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 77 | 4575118 | 4575336 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 78 | 2140105 | 2140326 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 79 | 2879539 | 2879769 | - | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 80 | 4064515 | 4064739 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 81 | 5347258 | 5347530 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 82 | 301088 | 301348 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 83 | 1257358 | 1257636 | - | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 84 | 72301 | 72546 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
| 85 | 2179892 | 2180119 | + | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 86 | 4758075 | 4758323 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 87 | 103480 | 103722 | - | NZ_CP046531.1 | Mannheimia ovis |
| 88 | 3424543 | 3424776 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 89 | 4514261 | 4514497 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 90 | 3094850 | 3095083 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 91 | 1354661 | 1354879 | + | NZ_CP030918.1 | Paracoccus suum |
| 92 | 597340 | 597666 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 93 | 2832542 | 2832793 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 94 | 490448 | 490693 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 95 | 90469 | 90693 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 96 | 6724401 | 6724625 | - | NZ_LR134338.1 | Brevibacillus brevis |
| 97 | 1853557 | 1853790 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 98 | 3061165 | 3061470 | - | NZ_CP041146.1 | Nocardioides humi |
| 99 | 1862399 | 1862626 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 100 | 1322125 | 1322376 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 101 | 80297 | 80536 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 102 | 3518103 | 3518324 | - | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 103 | 2681715 | 2681933 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 104 | 4424576 | 4424815 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 105 | 3761809 | 3762030 | + | NZ_CP037922.1 | Hymenobacter radiodurans |
| 106 | 227993 | 228220 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 107 | 3432655 | 3432882 | - | NZ_CP046904.1 | Massilia flava |
| 108 | 4180054 | 4180302 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 109 | 4236575 | 4236829 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 110 | 1081483 | 1081764 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 111 | 2419811 | 2420071 | - | NC_007519.1 | Desulfovibrio alaskensis G20 |
| 112 | 2686098 | 2686346 | + | NZ_CP046603.1 | Lysobacter soli |
| 113 | 3001976 | 3002200 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 114 | 410257 | 410511 | - | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 115 | 3688934 | 3689203 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 116 | 516431 | 516676 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 117 | 2215789 | 2216028 | + | NZ_CP068419.1 | Gluconobacter sphaericus |
| 118 | 234016 | 234237 | + | NZ_AP019700.1 | Stella humosa |
| 119 | 1271671 | 1271913 | + | NZ_AP019551.1 | Athalassotoga saccharophila |
| 120 | 3051182 | 3051415 | - | NZ_LR134379.1 | Slackia heliotrinireducens |
| 121 | 4522631 | 4522858 | - | NZ_CP040017.1 | Massilia umbonata |
| 122 | 3919060 | 3919290 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 123 | 2075364 | 2075612 | + | NZ_CP032788.1 | Corynebacterium xerosis |
| 124 | 3375852 | 3376133 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 125 | 839094 | 839315 | - | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 126 | 3344130 | 3344387 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 127 | 2366017 | 2366247 | - | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 128 | 2415831 | 2416088 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 129 | 2288026 | 2288268 | - | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 130 | 2361963 | 2362223 | - | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 131 | 3525115 | 3525411 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 132 | 4265022 | 4265240 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 133 | 2030037 | 2030264 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 134 | 780597 | 780917 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 135 | 1597609 | 1597929 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 136 | 3423167 | 3423424 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 137 | 1386493 | 1386765 | + | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 138 | 6871118 | 6871369 | - | NZ_CP043930.1 | Gimesia benthica |
| 139 | 1579371 | 1579637 | + | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 140 | 4197051 | 4197278 | - | NZ_CP041352.1 | Casimicrobium huifangae |
| 141 | 1840588 | 1840824 | - | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 142 | 1986299 | 1986538 | + | NZ_CP043043.1 | Gluconobacter thailandicus |
| 143 | 1794303 | 1794536 | - | NZ_AP019367.1 | Parolsenella catena |
| 144 | 1809943 | 1810218 | + | NZ_CP051774.1 | Luteolibacter luteus |
| 145 | 4947616 | 4947837 | + | NZ_CP036353.1 | Gimesia maris |
| 146 | 1115440 | 1115700 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 147 | 430301 | 430525 | + | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 148 | 1296284 | 1296520 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 149 | 2768131 | 2768361 | - | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 150 | 415386 | 415607 | + | NC_014221.1 | Truepera radiovictrix DSM 17093 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_018518.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02096.22 | 0.61 | 92 | 12.0 | same-strand | 60Kd inner membrane protein |
++ More..