ProsmORF-pred
Result : Q7VQL2
Protein Information
Information Type Description
Protein name 30S ribosomal protein S20
NCBI Accession ID BX248583.1
Organism Blochmannia floridanus
Left 130753
Right 131019
Strand -
Nucleotide Sequence TTGGCTAATACTAAATCTGCTAAAAAATTCATTATAAAATCCAAAAAAAATCGAAATCGTAACTTAAGCAATAGATCAATGTTAAAAACCTTCATAAAAAAAGTAAACATAGCTATTAATAAGAGAAATATTTCAGAAGCTCTTTTTGCATTCAAAAACATGCAAAAATGTATTGATCGACAATCAATAAAAGGGCTAATCCATAAAAATAAAGCAGCACGATGCAAGTCAAAAATTTTTAGGCGTATTAGTTTACTTATAAATTGA
Sequence MANTKSAKKFIIKSKKNRNRNLSNRSMLKTFIKKVNIAINKRNISEALFAFKNMQKCIDRQSIKGLIHKNKAARCKSKIFRRISLLIN
Source of smORF Swiss-Prot
Function Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}.
Pubmed ID 12886019
Domain CDD:412349
Functional Category Ribosomal_protein
Uniprot ID Q7VQL2
ORF Length (Amino Acid) 88
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 206
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2811168 2811431 + NZ_LS483470.1 Leminorella richardii
2 2757332 2757595 + NZ_CP007445.1 Gilliamella apicola
3 878463 878726 - NZ_LR134531.1 Pragia fontium
4 658757 659020 - NC_012880.1 Musicola paradisiaca Ech703
5 4565947 4566210 + NZ_CP014007.2 Kosakonia oryzae
6 5114987 5115250 + NZ_CP051548.1 Phytobacter diazotrophicus
7 3840944 3841207 + NZ_CP011602.1 Phytobacter ursingii
8 451231 451494 - NZ_CP065534.1 Lonsdalea populi
9 580821 581084 + NZ_CP023009.1 Lonsdalea britannica
10 3888448 3888711 + NZ_LT615367.1 Dickeya aquatica
11 2585072 2585335 + NZ_CP009056.1 Frischella perrara
12 623450 623713 - NC_012962.1 Photorhabdus asymbiotica
13 644828 645091 - NZ_LR134340.1 Escherichia marmotae
14 731636 731899 - NZ_CP012264.1 Cronobacter condimenti 1330
15 3320945 3321208 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
16 2651303 2651566 - NZ_CP053416.1 Salmonella bongori
17 3139203 3139466 + NC_009792.1 Citrobacter koseri ATCC BAA-895
18 52280 52543 - NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
19 4403903 4404166 + NZ_LR134475.1 Klebsiella aerogenes
20 726175 726438 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
21 3925121 3925384 + NZ_CP045845.1 Kluyvera intermedia
22 2656687 2656950 + NZ_CP038469.1 Citrobacter tructae
23 1593903 1594166 + NZ_CP044098.1 Citrobacter portucalensis
24 3462090 3462353 - NZ_CP033744.1 Citrobacter freundii
25 2238490 2238753 - NZ_LT556085.1 Citrobacter amalonaticus
26 4486434 4486697 + NZ_CP041247.1 Raoultella electrica
27 4886673 4886936 + NZ_CP045205.1 Citrobacter telavivensis
28 2515393 2515656 - NZ_CP026047.1 Raoultella planticola
29 4715748 4716011 + NZ_CP046672.1 Raoultella ornithinolytica
30 4825443 4825706 + NZ_CP050508.1 Raoultella terrigena
31 5190791 5191054 + NZ_CP060111.1 Klebsiella michiganensis
32 5089105 5089368 + NZ_CP036175.1 Klebsiella huaxiensis
33 3204376 3204639 + NZ_CP034035.1 Brenneria rubrifaciens
34 706359 706622 - NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
35 5128195 5128458 - NZ_CP014137.1 Brenneria goodwinii
36 775439 775702 - NZ_LT906479.1 Serratia ficaria
37 2715549 2715812 + NZ_CP027107.1 Cronobacter sakazakii
38 3454872 3455135 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
39 723650 723913 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
40 4119350 4119613 - NZ_CP023529.1 Lelliottia amnigena
41 3911233 3911496 + NZ_CP054058.1 Scandinavium goeteborgense
42 3943104 3943367 + NZ_CP035129.1 Kosakonia cowanii
43 740517 740780 - NZ_CP012871.1 [Enterobacter] lignolyticus
44 1936581 1936844 + NZ_CP014136.1 Gibbsiella quercinecans
45 5277235 5277498 + NZ_CP007044.2 Chania multitudinisentens RB-25
46 2312755 2313018 - NZ_CP047495.1 Pectobacterium brasiliense
47 3042790 3043053 + NZ_CP017482.1 Pectobacterium polaris
48 2641651 2641914 - NZ_CP011254.1 Serratia fonticola
49 4209280 4209543 + NZ_CP009125.1 Pectobacterium atrosepticum
50 1693222 1693482 + NC_013892.1 Xenorhabdus bovienii SS-2004
51 2345066 2345329 + NZ_CP045300.1 Kosakonia arachidis
52 2742307 2742567 - NZ_FO704551.1 Xenorhabdus poinarii G6
53 664434 664697 - NZ_AP023184.1 Buttiauxella agrestis
54 4371602 4371865 + NZ_CP071320.1 Serratia ureilytica
55 17577 17840 - NZ_CP016948.1 Serratia surfactantfaciens
56 694129 694392 - NZ_CP038662.1 Serratia nematodiphila
57 643016 643279 - NZ_CP051652.1 Pectobacterium carotovorum
58 1369886 1370149 + NZ_CP015137.1 Dickeya solani IPO 2222
59 4238004 4238267 + NZ_CP034938.1 Pectobacterium odoriferum
60 1989628 1989891 - NZ_CP040428.1 Jejubacter calystegiae
61 4044118 4044381 + NZ_CP038498.1 Pectobacterium punjabense
62 787539 787802 - NZ_CP065044.1 Pectobacterium aroidearum
63 4893054 4893317 - NZ_CP015749.1 Pectobacterium parmentieri
64 968373 968636 + NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
65 4097623 4097886 + NZ_CP013990.1 Leclercia adecarboxylata
66 3574804 3575067 + NZ_CP061527.1 Shigella dysenteriae
67 3223740 3224003 - NZ_AP019007.1 Enterobacter oligotrophicus
68 3549802 3550065 - NZ_CP057657.1 Escherichia fergusonii
69 20815 21078 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
70 23627 23890 - NZ_AP014857.1 Escherichia albertii
71 692408 692671 - NZ_CP017184.1 Enterobacter roggenkampii
72 3833412 3833675 - NZ_CP017279.1 Enterobacter ludwigii
73 25221 25484 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
74 4203325 4203588 + NZ_CP031560.1 Dickeya dianthicola
75 4191818 4192081 + NC_014500.1 Dickeya dadantii 3937
76 2217474 2217737 - NZ_CP065640.1 Serratia rubidaea
77 3538098 3538361 - NZ_CP009460.1 Dickeya fangzhongdai
78 1821598 1821861 - NZ_CP020388.1 Pluralibacter gergoviae
79 4454539 4454802 + NZ_CP065838.1 Klebsiella quasipneumoniae
80 3621767 3622030 - NZ_CP009787.1 Yersinia rohdei
81 3414390 3414653 - NZ_CP009781.1 Yersinia aldovae 670-83
82 1979881 1980144 - NZ_CP054043.1 Yersinia mollaretii ATCC 43969
83 3851693 3851956 + NZ_LR134373.1 Yersinia pseudotuberculosis
84 766374 766637 - NZ_CP043727.1 Yersinia canariae
85 757198 757461 - NZ_CP032487.1 Yersinia hibernica
86 2364191 2364454 - NZ_CP007230.1 Yersinia similis
87 3934292 3934555 + NZ_CP046293.1 Yersinia intermedia
88 630889 631152 - NZ_CP042220.2 Dickeya poaceiphila
89 4018107 4018370 + NZ_CP025799.1 Dickeya zeae
90 622204 622467 - NC_012912.1 Dickeya chrysanthemi Ech1591
91 700440 700703 - NZ_AP022508.1 Enterobacter bugandensis
92 2849989 2850252 + NZ_CP045769.1 Enterobacter cancerogenus
93 1041508 1041771 + NZ_CP042941.1 Atlantibacter hermannii
94 3954641 3954904 + NZ_CP011118.1 Yersinia enterocolitica
95 768277 768540 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
96 26742 27005 - NC_013716.1 Citrobacter rodentium ICC168
97 4726527 4726790 + NZ_CP054254.1 Klebsiella variicola
98 672832 673095 - NZ_CP027986.1 Enterobacter sichuanensis
99 673442 673705 - NC_015968.1 Enterobacter soli
100 1832157 1832420 + NZ_CP025034.2 Enterobacter sp. SGAir0187
101 718161 718424 - NZ_CP009756.1 Enterobacter cloacae
102 2330264 2330527 + NZ_CP016337.1 Kosakonia sacchari
103 743276 743539 - NZ_CP063425.1 Kosakonia pseudosacchari
104 817637 817900 - NZ_CP043318.1 Enterobacter chengduensis
105 3901425 3901688 + NZ_LR134201.1 Cedecea lapagei
106 4178601 4178864 + NZ_CP023525.1 Cedecea neteri
107 612654 612914 - NZ_CP047349.1 Proteus terrae subsp. cibarius
108 806546 806809 - NC_014306.1 Erwinia billingiae Eb661
109 3898521 3898784 + NZ_CP006569.1 Sodalis praecaptivus
110 1046878 1047141 + NZ_CP023706.1 Edwardsiella tarda
111 3073228 3073491 + NZ_CP016043.1 Edwardsiella hoshinae
112 641852 642115 - NZ_CP034148.1 Pantoea agglomerans
113 3463704 3463967 + NZ_CP045720.1 Pantoea eucalypti
114 3402966 3403229 + NZ_CP038853.1 Pantoea vagans
115 102118 102378 + NZ_CP029736.1 Providencia rettgeri
116 103334 103594 - NZ_CP031123.2 Providencia huaxiensis
117 3153962 3154222 + NZ_CP034752.1 Jinshanibacter zhutongyuii
118 756111 756374 - NZ_LN907827.1 Erwinia gerundensis
119 662875 663138 - NC_012779.2 Edwardsiella ictaluri 93-146
120 2370499 2370762 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
121 4222130 4222390 + NZ_CP060401.1 Xenorhabdus nematophila
122 3489195 3489458 + NZ_CP015581.1 Tatumella citrea
123 2860370 2860633 - NZ_CP011078.1 Yersinia ruckeri
124 3816432 3816695 + NZ_CP050150.1 Hafnia alvei
125 2814699 2814959 + NZ_CP029185.2 Limnobaculum parvum
126 790606 790869 - NC_010694.1 Erwinia tasmaniensis Et1/99
127 2607422 2607682 - NZ_CP016176.1 Xenorhabdus hominickii
128 1256698 1256958 + NZ_CP011104.1 Photorhabdus thracensis
129 670379 670642 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
130 639870 640130 - NZ_CP048784.1 Serratia liquefaciens
131 678111 678371 - NZ_LR134494.1 Serratia quinivorans
132 522004 522267 - NZ_CP015113.1 Kosakonia radicincitans
133 325554 325814 + NZ_CP023536.1 Providencia alcalifaciens
134 806721 806984 + NZ_CP019706.1 Pantoea alhagi
135 765911 766174 - NZ_CP061511.1 Mixta calida
136 882234 882497 - NZ_CP026377.1 Mixta gaviniae
137 775310 775570 + NZ_CP072455.1 Xenorhabdus budapestensis
138 3577163 3577426 - NZ_CP049115.1 Pantoea stewartii
139 3823795 3824058 + NC_017554.1 Pantoea ananatis PA13
140 4671734 4671997 - NZ_CP028271.1 Mixta intestinalis
141 3613683 3613943 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
142 719965 720225 + NZ_FO704550.1 Xenorhabdus doucetiae
143 740511 740771 - NZ_CP048796.1 Providencia vermicola
144 782073 782333 - NZ_LS483422.1 Providencia heimbachae
145 3038313 3038576 + NC_013961.1 Erwinia amylovora CFBP1430
146 3186069 3186332 + NZ_CP023567.1 Erwinia pyrifoliae
147 3444073 3444336 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
148 3947827 3948093 + NC_011566.1 Shewanella piezotolerans WP3
149 426240 426503 - NZ_CP029206.1 Actinobacillus porcitonsillarum
150 2883738 2883998 + NZ_CP071325.1 Photobacterium ganghwense
151 436001 436264 + NZ_LR134167.1 Avibacterium volantium
152 707910 708173 - NC_015567.1 Serratia plymuthica AS9
153 509252 509515 - NZ_CP061280.1 Mannheimia bovis
154 363464 363727 + NZ_CP046531.1 Mannheimia ovis
155 390818 391081 + NZ_CP055305.1 Mannheimia pernigra
156 492414 492686 - NC_016893.1 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
157 2923763 2924023 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
158 987253 987519 - NZ_CP069213.1 Shewanella litorisediminis
159 1113292 1113558 - NC_008700.1 Shewanella amazonensis SB2B
160 1535774 1536037 - NZ_LT906448.1 Pasteurella dagmatis
161 895737 896000 - NZ_CP015425.1 [Haemophilus] ducreyi
162 31536 31799 - NZ_LS483429.1 Haemophilus aegyptius
163 1417753 1418019 - NC_009831.1 Shewanella sediminis HAW-EB3
164 1722741 1723004 - NZ_CP018804.1 Histophilus somni
165 198354 198617 - NZ_CP016604.1 Otariodibacter oris
166 4504967 4505227 + NZ_CP019628.1 Pseudoalteromonas aliena
167 943127 943387 - NC_007481.1 Pseudoalteromonas translucida
168 1007171 1007431 - NZ_CP011036.1 Pseudoalteromonas nigrifaciens
169 2646932 2647192 + NZ_CP027523.1 Pseudoalteromonas carrageenovora
170 2803083 2803343 + NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
171 2517607 2517867 + NZ_CP033065.1 Pseudoalteromonas agarivorans
172 1055442 1055702 - NZ_CP023464.1 Pseudoalteromonas atlantica
173 2649655 2649915 + NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
174 63699 63962 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
175 216710 216973 + NZ_CP015029.1 Frederiksenia canicola
176 1069662 1069922 - NZ_CP011041.1 Pseudoalteromonas tetraodonis
177 1055824 1056084 - NZ_CP011030.1 Pseudoalteromonas issachenkonii
178 3414420 3414680 + NZ_CP044399.1 Moritella marina ATCC 15381
179 1051794 1052057 + NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
180 2515265 2515525 + NZ_LS483250.1 Moritella yayanosii
181 604313 604573 - NZ_CP031416.1 Gallaecimonas mangrovi
182 2882797 2883060 + NZ_CP067057.1 Rahnella aceris
183 1366924 1367190 - NC_016901.1 Shewanella baltica OS678
184 617464 617727 - NZ_CP028926.1 Pasteurella multocida
185 2383639 2383899 + NZ_CP072844.1 Psychrosphaera aestuarii
186 2367584 2367847 + NZ_CP029347.1 Saliniradius amylolyticus
187 909936 910196 - NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
188 1628994 1629254 - NZ_CP009888.1 Pseudoalteromonas piratica
189 1859364 1859627 + NZ_CP016605.1 Bisgaardia hudsonensis
190 19770 20033 - NC_004337.2 Shigella flexneri 2a str. 301
191 2080799 2081059 + NZ_CP031961.1 Pseudoalteromonas tunicata
192 1362443 1362706 + NZ_CP015031.1 Basfia succiniciproducens
193 1750086 1750349 + NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
194 2109293 2109556 - NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188
195 1531053 1531319 + NZ_LR134510.1 Actinobacillus delphinicola
196 1310295 1310561 - NZ_CP037951.1 Parashewanella tropica
197 2431438 2431698 + NZ_CP032090.1 Pseudoalteromonas donghaensis
198 850107 850367 - NC_014541.1 Ferrimonas balearica DSM 9799
199 2577864 2578127 + NC_021883.1 Mannheimia haemolytica USMARC_2286
200 1893282 1893545 + NZ_AP018560.1 Aerosticca soli
201 2782859 2783122 + NZ_CP051883.1 Aeromonas salmonicida
202 636120 636383 - NZ_LR134376.1 Aeromonas encheleia
203 2263160 2263420 + NZ_CP033078.1 Vibrio zhugei
204 3241217 3241480 + NC_012691.1 Tolumonas auensis DSM 9187
205 2850960 2851220 + NZ_AP014635.1 Vibrio tritonius
206 2461104 2461364 - NZ_CP046793.1 Vibrio metschnikovii
207 1154344 1154604 - NC_016041.1 Glaciecola nitratireducens FR1064
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_012880.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF02401.20 0.66 135 5178.5 opposite-strand LytB protein
2 PF01252.20 0.91 187 4192.0 opposite-strand Signal peptidase (SPase) II
3 PF00133.24 0.93 191 1370.5 opposite-strand tRNA synthetases class I (I, L, M and V)
4 PF08264.15 0.93 191 1370.5 opposite-strand Anticodon-binding domain of tRNA ligase
5 PF06827.16 0.9 186 1365 opposite-strand Zinc finger found in FPG and IleRS
6 PF06574.14 0.93 192 391 opposite-strand FAD synthetase
7 PF01687.19 0.93 192 391 opposite-strand Riboflavin kinase
8 PF06965.14 0.71 147 1046 opposite-strand Na+/H+ antiporter 1
9 PF00126.29 0.67 137 77 opposite-strand Bacterial regulatory helix-turn-helix protein, lysR family
10 PF03466.22 0.67 137 77 opposite-strand LysR substrate binding domain
11 PF00254.30 0.63 129 4745.0 opposite-strand FKBP-type peptidyl-prolyl cis-trans isomerase
++ More..