Result : Q7VQE6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | BX248583.1 |
| Organism | Blochmannia floridanus |
| Left | 222830 |
| Right | 223129 |
| Strand | + |
| Nucleotide Sequence | ATGTATATAGAACGTTTGTTAAAAGTTATAAAAGCTCCTCATGTTTCTGAAAAATCATCTATTGCTTTGGATAAAAATAATGTTATTGTGTTAAAGGTGGTAAACTATGTAACAAAACAAGATATTAGACATGCTGTGTGTATGTTGTTTTCTGTGAAAATAAAAAAAATTAATGTTTTGATGGTTTCTGGAAAGTCTAAAGGACAAAGATATAATCTTGGTTATAGATGTAATTGGAAAAAAGCATATGTGATTTTAAAACGTGGTTATACAGTAGATTTAATGAATATGGAGCAATAG |
| Sequence | MYIERLLKVIKAPHVSEKSSIALDKNNVIVLKVVNYVTKQDIRHAVCMLFSVKIKKINVLMVSGKSKGQRYNLGYRCNWKKAYVILKRGYTVDLMNMEQ |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | 12886019 |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q7VQE6 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 159
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3004504 | 3004806 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 2 | 1565097 | 1565399 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 3 | 4367396 | 4367698 | - | NZ_CP043727.1 | Yersinia canariae |
| 4 | 333448 | 333750 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 5 | 4381502 | 4381804 | - | NZ_CP032487.1 | Yersinia hibernica |
| 6 | 137876 | 138178 | + | NZ_CP046293.1 | Yersinia intermedia |
| 7 | 3484554 | 3484856 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 8 | 3531193 | 3531495 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 9 | 313988 | 314290 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 10 | 308815 | 309117 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 11 | 1267119 | 1267421 | - | NZ_CP007230.1 | Yersinia similis |
| 12 | 4029728 | 4030003 | + | NZ_CP067057.1 | Rahnella aceris |
| 13 | 2593163 | 2593465 | - | NZ_CP009787.1 | Yersinia rohdei |
| 14 | 3615090 | 3615392 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 15 | 456172 | 456474 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 16 | 466308 | 466610 | + | NZ_CP038853.1 | Pantoea vagans |
| 17 | 1684819 | 1685121 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 18 | 5496656 | 5496958 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 19 | 1318054 | 1318329 | - | NZ_CP011254.1 | Serratia fonticola |
| 20 | 272792 | 273094 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 21 | 2522595 | 2522897 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 22 | 4875577 | 4875879 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 23 | 135911 | 136213 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 24 | 3583980 | 3584282 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 25 | 4845218 | 4845493 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 26 | 1705270 | 1705572 | + | NZ_CP026364.1 | Proteus hauseri |
| 27 | 392924 | 393226 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 28 | 4195266 | 4195568 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 29 | 4405094 | 4405396 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 30 | 1383277 | 1383552 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 31 | 2900207 | 2900482 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 32 | 4589467 | 4589739 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 33 | 1118252 | 1118527 | - | NZ_CP065640.1 | Serratia rubidaea |
| 34 | 337295 | 337570 | + | NZ_CP071320.1 | Serratia ureilytica |
| 35 | 4073316 | 4073591 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 36 | 4809495 | 4809770 | - | NZ_LT906479.1 | Serratia ficaria |
| 37 | 4895966 | 4896241 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 38 | 5011991 | 5012266 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 39 | 1188585 | 1188857 | - | NZ_CP019706.1 | Pantoea alhagi |
| 40 | 4939937 | 4940212 | - | NZ_LR134494.1 | Serratia quinivorans |
| 41 | 402579 | 402854 | + | NZ_CP061511.1 | Mixta calida |
| 42 | 477169 | 477471 | + | NZ_CP026377.1 | Mixta gaviniae |
| 43 | 2011399 | 2011701 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 44 | 284360 | 284662 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 45 | 3481182 | 3481484 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 46 | 1419679 | 1419981 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 47 | 3489295 | 3489597 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 48 | 3796672 | 3796947 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 49 | 223929 | 224204 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 50 | 3889730 | 3890005 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 51 | 3967085 | 3967360 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 52 | 77910 | 78185 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 53 | 4056974 | 4057249 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 54 | 377447 | 377719 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 55 | 714692 | 714967 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 56 | 4235193 | 4235495 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 57 | 2136463 | 2136765 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 58 | 478242 | 478544 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 59 | 519291 | 519593 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 60 | 4395632 | 4395934 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 61 | 3208437 | 3208739 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 62 | 4734511 | 4734813 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 63 | 1136818 | 1137120 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 64 | 310584 | 310859 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 65 | 421192 | 421494 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 66 | 149997 | 150269 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 67 | 474173 | 474445 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 68 | 4190064 | 4190336 | - | NZ_CP025799.1 | Dickeya zeae |
| 69 | 486328 | 486600 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 70 | 1646675 | 1646947 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 71 | 4389970 | 4390242 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 72 | 4798104 | 4798376 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 73 | 3435765 | 3436040 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 74 | 3451382 | 3451657 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 75 | 3427389 | 3427664 | - | NZ_AP014857.1 | Escherichia albertii |
| 76 | 4186522 | 4186797 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 77 | 105147 | 105419 | + | NZ_CP015581.1 | Tatumella citrea |
| 78 | 4226161 | 4226436 | + | NZ_CP028271.1 | Mixta intestinalis |
| 79 | 2027947 | 2028222 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 80 | 4202108 | 4202383 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 81 | 405335 | 405610 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 82 | 4276095 | 4276370 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 83 | 4349750 | 4350025 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 84 | 4295031 | 4295306 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 85 | 4309498 | 4309773 | - | NC_015968.1 | Enterobacter soli |
| 86 | 3004518 | 3004793 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 87 | 4399045 | 4399320 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 88 | 2857592 | 2857867 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 89 | 4051596 | 4051871 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 90 | 3558617 | 3558892 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 91 | 1654477 | 1654752 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 92 | 4631148 | 4631423 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 93 | 4758797 | 4759072 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 94 | 450956 | 451231 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 95 | 978332 | 978607 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 96 | 5139262 | 5139537 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 97 | 4873009 | 4873284 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 98 | 480268 | 480570 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 99 | 2996485 | 2996760 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 100 | 2448989 | 2449291 | - | NZ_CP049115.1 | Pantoea stewartii |
| 101 | 456695 | 456997 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 102 | 504638 | 504913 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 103 | 2829194 | 2829469 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 104 | 425757 | 426032 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 105 | 316249 | 316551 | + | NZ_CP065534.1 | Lonsdalea populi |
| 106 | 446761 | 447036 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 107 | 2253404 | 2253679 | - | NZ_CP033744.1 | Citrobacter freundii |
| 108 | 421952 | 422227 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 109 | 4869005 | 4869280 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 110 | 431487 | 431762 | + | NZ_CP054254.1 | Klebsiella variicola |
| 111 | 3594649 | 3594924 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 112 | 543787 | 544062 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 113 | 460470 | 460772 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 114 | 2372673 | 2372948 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 115 | 1444780 | 1445055 | - | NZ_CP053416.1 | Salmonella bongori |
| 116 | 3827583 | 3827858 | + | NZ_CP038469.1 | Citrobacter tructae |
| 117 | 3954571 | 3954846 | - | NZ_LR134340.1 | Escherichia marmotae |
| 118 | 27813 | 28088 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 119 | 2115407 | 2115682 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 120 | 4446028 | 4446303 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 121 | 452126 | 452398 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 122 | 422525 | 422800 | + | NZ_CP041247.1 | Raoultella electrica |
| 123 | 1255624 | 1255899 | - | NZ_CP026047.1 | Raoultella planticola |
| 124 | 460864 | 461139 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 125 | 424092 | 424367 | + | NZ_CP050508.1 | Raoultella terrigena |
| 126 | 4046262 | 4046534 | - | NZ_LT615367.1 | Dickeya aquatica |
| 127 | 4426852 | 4427124 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 128 | 4065397 | 4065699 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 129 | 3315874 | 3316149 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 130 | 749824 | 750126 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 131 | 2695967 | 2696242 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 132 | 373428 | 373703 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 133 | 971129 | 971431 | + | NZ_CP029736.1 | Providencia rettgeri |
| 134 | 3567481 | 3567783 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 135 | 4099721 | 4100023 | - | NZ_CP048796.1 | Providencia vermicola |
| 136 | 4105306 | 4105608 | - | NZ_LS483422.1 | Providencia heimbachae |
| 137 | 1190990 | 1191292 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 138 | 3429121 | 3429396 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 139 | 237856 | 238158 | + | NZ_LR134201.1 | Cedecea lapagei |
| 140 | 233334 | 233636 | + | NZ_CP023525.1 | Cedecea neteri |
| 141 | 177669 | 177944 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 142 | 180627 | 180902 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 143 | 176432 | 176707 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 144 | 3543731 | 3544006 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 145 | 3164164 | 3164466 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 146 | 164397 | 164672 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 147 | 169342 | 169617 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 148 | 458633 | 458908 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 149 | 3168633 | 3168935 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 150 | 3589857 | 3590159 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 151 | 4179027 | 4179302 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 152 | 2066636 | 2066911 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 153 | 245517 | 245792 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 154 | 1179377 | 1179652 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 155 | 114716 | 115003 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 156 | 157866 | 158141 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 157 | 158737 | 159012 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 158 | 1509108 | 1509410 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 159 | 389283 | 389558 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 160 | 1079941 | 1080246 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009781.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00210.26 | 0.82 | 131 | 2440 | same-strand | Ferritin-like domain |
| 2 | PF00338.24 | 1.0 | 159 | 1302.0 | same-strand | Ribosomal protein S10p/S20e |
| 3 | PF00573.24 | 1.0 | 159 | 24.0 | same-strand | Ribosomal protein L4/L1 family |
| 4 | PF03947.20 | 1.0 | 159 | 18.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 5 | PF00181.25 | 1.0 | 159 | 18.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 6 | PF00203.23 | 0.99 | 158 | 856 | same-strand | Ribosomal protein S19 |
| 7 | PF00237.21 | 1.0 | 159 | 1149.0 | same-strand | Ribosomal protein L22p/L17e |
| 8 | PF00189.22 | 1.0 | 159 | 1499.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 9 | PF07650.19 | 1.0 | 159 | 1499.0 | same-strand | KH domain |
| 10 | PF00252.20 | 1.0 | 159 | 2213.0 | same-strand | Ribosomal protein L16p/L10e |
++ More..