Protein Information |
Information Type | Description |
---|---|
Protein name | UPF0367 protein PMT_1986 |
NCBI Accession ID | BX548175.1 |
Organism | Prochlorococcus marinus (strain MIT 9313) |
Left | 2100119 |
Right | 2100421 |
Strand | + |
Nucleotide Sequence | GTGATTCGCAAGAATGATGCAATCCTGTCAACGTTGTCCGTGTACGTCATTGAGCTGGCCCTCAAATTGAGCCCCTTGCCGGTATCGGTGCAGCGAAAAGCATTAACAGATGCGGAAGCCGTTTACCAGCAAGTGCGCAAGTGCCTGGAGAGAGGTCAGCCTCACCTTCTCGAGCTCAGTTGCGAAAAAGTCGAAGACAAGAAAGTCACTGTTTTGGTCAGTGAAATAGTTGCTGTTCAGCTCTATGAGAAAACAGCAGCAACTGGAGGCAGTAAGCGGCCTGGCTTTTCCTTTGAAACCTGA |
Sequence | MIRKNDAILSTLSVYVIELALKLSPLPVSVQRKALTDAEAVYQQVRKCLERGQPHLLELSCEKVEDKKVTVLVSEIVAVQLYEKTAATGGSKRPGFSFET |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of PRK13683. Profile Description: hypothetical protein; Provisional |
Pubmed ID | 12917642 |
Domain | CDD:184240 |
Functional Category | Others |
Uniprot ID | Q7V4G6 |
ORF Length (Amino Acid) | 100 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 145956 | 146219 | + | NC_005042.1 | Prochlorococcus marinus subsp. marinus str. CCMP1375 |
2 | 2853160 | 2853423 | - | NC_019675.1 | Cyanobium gracile PCC 6307 |
3 | 2048351 | 2048614 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
4 | 1699826 | 1700080 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00005.29 | 1.0 | 4 | 1.5 | same-strand | ABC transporter |
2 | PF00124.21 | 0.75 | 3 | 293 | opposite-strand | Photosynthetic reaction centre protein |