ProsmORF-pred
Result : A9B414
Protein Information
Information Type Description
Protein name 50S ribosomal protein L23
NCBI Accession ID CP000875.1
Organism Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95)
Left 6255484
Right 6255780
Strand +
Nucleotide Sequence ATGAACGCGCACGATATTATTATTCGCCCCGTCATCACCGAAAAAAATACGGCGTTGATGGAAGAGGGCAAATACACGTTCGAGGTGGCACAAGAAGCCAACAAGCCGATGATCAAGGCTGCTGTGCAACAGATTTTCAACGTCAACGTGAAAGCTGTTAACACCATGAATGTCAAGGGTAAGTTGAAAGTTCGCCGTACTCGCAATGGCCAACAAAGCGGTTATAGCCGCAGTTGGAAAAAAGCCATCGTTACCTTGGCTCCAGGCGAACGGATCGAAATCTTCGAAGATCTCTAG
Sequence MNAHDIIIRPVITEKNTALMEEGKYTFEVAQEANKPMIKAAVQQIFNVNVKAVNTMNVKGKLKVRRTRNGQQSGYSRSWKKAIVTLAPGERIEIFEDL
Source of smORF Swiss-Prot
Function One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}.
Pubmed ID
Domain CDD:412311
Functional Category Ribosomal_protein
Uniprot ID A9B414
ORF Length (Amino Acid) 98
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 545
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 3679500 3679763 - NC_011831.1 Chloroflexus aggregans DSM 9485
2 782622 782921 + NC_013525.1 Thermobaculum terrenum ATCC BAA-798
3 5223954 5224238 - NC_009767.1 Roseiflexus castenholzii DSM 13941
4 1223454 1223729 - NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
5 817743 818030 - NZ_CP014163.1 Aerococcus urinaehominis
6 1778465 1778755 - NZ_CP013988.1 Aerococcus urinaeequi
7 424698 424988 + NZ_CP014164.1 Aerococcus viridans
8 2007019 2007300 + NZ_LT996885.1 Dialister massiliensis
9 2936494 2936760 + NZ_CP045798.1 Thermoanaerosceptrum fracticalcis
10 699011 699307 + NC_016148.1 Thermovirga lienii DSM 17291
11 428880 429164 - NZ_CP018888.1 Amylolactobacillus amylophilus DSM 20533 = JCM 1125
12 1640607 1640888 - NC_015437.1 Selenomonas sputigena ATCC 35185
13 107095 107397 + NZ_LT635455.1 Olsenella timonensis
14 173125 173394 + NZ_LN824141.1 Defluviitoga tunisiensis
15 1674039 1674323 - NZ_LT906470.1 Veillonella rodentium
16 1616290 1616574 - NZ_AP022321.1 Veillonella nakazawae
17 1672886 1673170 - NZ_LR134375.1 Veillonella dispar
18 1732556 1732840 - NZ_LR778174.1 Veillonella parvula
19 666584 666880 + NC_014011.1 Aminobacterium colombiense DSM 12261
20 944135 944374 - NC_011959.1 Thermomicrobium roseum DSM 5159
21 471240 471536 + NC_018024.1 Acetomicrobium mobile DSM 13181
22 606720 607004 - NZ_CP046037.1 Latilactobacillus sakei
23 1838676 1838921 - NC_014363.1 Olsenella uli DSM 7084
24 220376 220660 + NZ_CP045007.1 Latilactobacillus graminis
25 1353251 1353535 - NZ_CP026116.1 Latilactobacillus curvatus JCM 1096 = DSM 20019
26 1297373 1297672 - NC_013203.1 Lancefieldella parvulum DSM 20469
27 874574 874873 - NC_016751.1 Marinitoga piezophila KA3
28 1525119 1525421 - NZ_CP014161.1 Aerococcus urinae
29 2698931 2699215 - NC_015500.1 Treponema brennaborense DSM 12168
30 1515070 1515354 - NC_013385.1 Ammonifex degensii KC4
31 4158011 4158268 - NC_013929.1 Streptomyces scabiei 87.22
32 624999 625283 + NZ_CP044499.1 Lapidilactobacillus dextrinicus
33 756764 757051 - NZ_CP034465.1 Jeotgalibaca ciconiae
34 2167085 2167372 - NC_008148.1 Rubrobacter xylanophilus DSM 9941
35 1543236 1543523 - NC_015389.1 Coriobacterium glomerans PW2
36 576997 577284 - NZ_CP049740.1 Jeotgalibaca arthritidis
37 4101396 4101671 - NZ_CP023689.1 Streptomyces chartreusis
38 1628259 1628549 + NZ_CP063356.1 Anaerobacillus isosaccharinicus
39 2244015 2244302 + NZ_AP018449.1 Methylomusa anaerophila
40 5251287 5251562 + NZ_CP021978.1 Streptomyces hawaiiensis
41 147933 148217 + NZ_CP009416.1 Jeotgalibacillus malaysiensis
42 503574 503858 + NZ_CP016843.1 Carnobacterium divergens
43 1711722 1712009 - NZ_LR134379.1 Slackia heliotrinireducens
44 1933067 1933354 - NC_022567.1 Adlercreutzia equolifaciens DSM 19450
45 2096916 2097203 + NZ_CP014912.1 Secundilactobacillus paracollinoides
46 3443591 3443881 - NZ_CP012502.1 Bacillus beveridgei
47 138245 138535 + NC_013791.2 Alkalihalobacillus pseudofirmus OF4
48 233484 233738 + NC_009253.1 Desulfotomaculum reducens MI-1
49 681883 682164 + NZ_CP009302.1 Berryella intestinalis
50 33789 34076 + NZ_CP023501.1 Weissella paramesenteroides
51 221369 221650 + NC_010718.1 Natranaerobius thermophilus JW/NM-WN-LF
52 158118 158408 + NC_014829.1 Evansella cellulosilytica DSM 2522
53 1156579 1156875 + NZ_AP018712.1 Tepiditoga spiralis
54 6305093 6305350 + NZ_CP034463.1 Streptomyces aquilus
55 1477111 1477398 - NZ_CP019728.1 Jeotgalibaca dankookensis
56 2285755 2286045 - NC_015520.1 Mahella australiensis 50-1 BON
57 181189 181476 + NZ_CP034118.1 Staphylospora marina
58 3681479 3681754 + NZ_CP032229.1 Streptomyces seoulensis
59 387613 387867 + NZ_CP019698.1 Desulfotomaculum ferrireducens
60 2718580 2718864 - NC_022097.1 Treponema pedis str. T A4
61 5056 5301 + NC_000918.1 Aquifex aeolicus VF5
62 2021052 2021339 - NZ_CP007514.1 Rubrobacter radiotolerans
63 2697628 2697912 - NZ_CP068053.1 Peribacillus psychrosaccharolyticus
64 403452 403748 + NZ_CP018809.1 Lactobacillus jensenii
65 5445784 5446059 + NZ_CP015098.1 Streptomyces qaidamensis
66 809284 809568 - NZ_CP029462.1 Megasphaera stantonii
67 946001 946285 + NZ_CP009240.1 Megasphaera elsdenii 14-14
68 4548750 4549025 + NZ_AP023439.1 Streptomyces tuirus
69 425552 425839 + NZ_CP032626.1 Apilactobacillus bombintestini
70 2748876 2749118 - NC_014831.1 Thermaerobacter marianensis DSM 12885
71 305569 305823 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
72 1944901 1945185 - NZ_CP022983.1 Cytobacillus kochii
73 145411 145698 + NC_017668.1 Halobacillus halophilus DSM 2266
74 1469768 1470079 - NZ_CP029477.1 Lactobacillus kullabergensis
75 2307368 2307652 - NC_014614.1 Acetoanaerobium sticklandii
76 1237131 1237436 + NC_011653.1 Thermosipho africanus TCF52B
77 2574726 2575010 + NZ_CP030926.1 Peribacillus butanolivorans
78 538930 539184 + NZ_CP031518.1 Treponema ruminis
79 225090 225386 + NZ_AP019367.1 Parolsenella catena
80 828432 828728 - NC_010003.1 Petrotoga mobilis SJ95
81 4576247 4576486 - NC_009633.1 Alkaliphilus metalliredigens QYMF
82 1171370 1171657 + NZ_CP022121.1 Dehalobacterium formicoaceticum
83 5934388 5934687 - NZ_AP023355.1 Actinocatenispora thailandica
84 825532 825819 + NZ_CP031115.1 Rubrobacter indicoceani
85 57383 57670 + NZ_CP036259.1 Sporomusa termitida
86 2438960 2439244 - NZ_CP017704.1 Peribacillus simplex NBRC 15720 = DSM 1321
87 1403454 1403693 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
88 4466507 4466764 + NZ_CP029043.1 Streptomyces nigra
89 198106 198393 - NZ_CP029971.1 Lentilactobacillus kefiri
90 2612294 2612578 - NC_015385.1 Treponema succinifaciens DSM 2489
91 990059 990364 + NZ_CP007389.1 Thermosipho melanesiensis
92 2355796 2356083 + NZ_CP031092.1 Salicibibacter kimchii
93 140219 140512 + NC_018704.1 Amphibacillus xylanus NBRC 15112
94 2174185 2174475 - NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
95 2373350 2373589 - NC_018664.1 Gottschalkia acidurici 9a
96 2079049 2079336 - NZ_CP035485.1 Salicibibacter halophilus
97 1483248 1483517 - NZ_AP017470.1 Thermotomaculum hydrothermale
98 2775225 2775512 - NC_013205.1 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
99 200953 201237 + NZ_CP010820.1 Lysinibacillus fusiformis
100 1714499 1714786 - NZ_CP049366.1 Companilactobacillus pabuli
101 4499678 4499962 - NZ_CP006837.1 Lysinibacillus varians
102 332033 332317 + NZ_CP014616.1 Sporosarcina psychrophila
103 244767 245051 + NZ_CP019980.1 Lysinibacillus sphaericus
104 1129255 1129515 - NZ_CP048429.1 Paenibacillus jilunlii
105 6435925 6436185 - NZ_CP009287.1 Paenibacillus graminis
106 1151580 1151840 - NZ_CP068595.1 Paenibacillus sonchi
107 5674154 5674456 + NZ_AP023440.1 Streptomyces glomeroaurantiacus
108 395219 395524 + NZ_CP059829.1 Lactobacillus ultunensis
109 2292914 2293207 - NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
110 138005 138244 + NC_011899.1 Halothermothrix orenii H 168
111 293904 294155 + NZ_CP026923.1 Pontimonas salivibrio
112 163413 163697 + NZ_CP016543.2 Planococcus donghaensis
113 143279 143563 + NZ_CP016537.2 Planococcus halocryophilus
114 147934 148218 + NZ_CP016534.2 Planococcus antarcticus DSM 14505
115 619446 619703 - NZ_CP019607.1 Tessaracoccus flavescens
116 170401 170691 + NC_002570.2 Alkalihalobacillus halodurans C-125
117 101731 102018 + NZ_CP017326.1 Weissella soli
118 5726953 5727225 + NZ_CP023690.1 Streptomyces spectabilis
119 892220 892495 + NZ_CP016279.1 Streptomyces griseochromogenes
120 2259110 2259373 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
121 1942417 1942710 - NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
122 415983 416276 + NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
123 2013261 2013554 - NC_013921.1 Thermoanaerobacter italicus Ab9
124 491341 491625 - NZ_CP009228.1 Treponema putidum
125 807774 808058 + NC_002967.9 Treponema denticola ATCC 35405
126 271361 271663 + NZ_CP031835.1 Lactobacillus amylolyticus
127 6157632 6157892 - NZ_CP009428.1 Paenibacillus odorifer
128 2023907 2024194 - NZ_CP040736.1 Companilactobacillus futsaii
129 131252 131536 + NZ_CP016540.2 Planococcus versutus
130 1619169 1619453 - NZ_CP013661.2 Planococcus kocurii
131 143424 143708 + NZ_CP019401.1 Planococcus faecalis
132 7400798 7401058 - NZ_CP009285.1 Paenibacillus borealis
133 355440 355745 + NZ_CP061341.1 Lactobacillus kefiranofaciens
134 2098321 2098608 - NZ_CP017702.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184
135 140282 140566 + NZ_CP016539.2 Planococcus plakortidis
136 410676 410936 + NZ_CP060789.1 Tessaracoccus defluvii
137 140910 141194 + NZ_CP016538.2 Planococcus maritimus
138 140751 141035 + NZ_CP059540.1 Planococcus maritimus
139 3329069 3329353 + NZ_CP013659.2 Planococcus rifietoensis
140 1229676 1229966 - NZ_LR134523.1 Peptoniphilus ivorii
141 1962648 1962941 - NZ_CP009170.1 Thermoanaerobacter kivui
142 1709173 1709439 - NZ_CP011402.1 Denitrobacterium detoxificans
143 842031 842318 + NC_009943.1 Desulfococcus oleovorans Hxd3
144 132232 132516 + NZ_CP065425.1 Heyndrickxia vini
145 4690671 4690931 - NZ_CP004078.1 Paenibacillus sabinae T27
146 5297740 5298000 - NZ_CP009288.1 Paenibacillus durus
147 6392131 6392421 - NZ_CP026520.1 Paenibacillus chitinolyticus
148 679096 679371 + NC_007777.1 Frankia casuarinae
149 391384 391704 + NZ_CP044496.1 Lactobacillus acetotolerans
150 270308 270562 - NZ_LT996886.1 Tessaracoccus timonensis
151 48694 48975 + NZ_CP040676.1 Exiguobacterium mexicanum
152 3273631 3273915 - NC_006177.1 Symbiobacterium thermophilum IAM 14863
153 354642 354935 + NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
154 2256120 2256413 - NZ_CP047602.1 Thermoanaerobacterium aotearoense
155 1053861 1054169 + NZ_CP025198.1 Acidipropionibacterium virtanenii
156 1966124 1966411 - NZ_CP065993.1 Leuconostoc pseudomesenteroides
157 2104552 2104791 - NZ_HF545616.1 Ruminococcus bicirculans
158 6282624 6282884 - NZ_CP021780.1 Paenibacillus donghaensis
159 728698 728937 - NC_015707.1 Pseudothermotoga thermarum DSM 5069
160 2218045 2218350 - NZ_CP025227.1 Actinomyces wuliandei
161 6597658 6597915 + NZ_CP045096.1 Streptomyces phaeolivaceus
162 558064 558351 + NZ_CP046996.1 Dehalobacter restrictus
163 4750592 4750849 + NZ_CP063374.1 Streptomyces chromofuscus
164 1903198 1903458 - NZ_CP006712.1 Bifidobacterium breve JCM 7017
165 1193193 1193480 - NZ_LT821227.1 Phoenicibacter congonensis
166 1143204 1143488 + NZ_CP053187.1 Turicibacter sanguinis
167 529674 529970 + NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
168 1755135 1755419 - NZ_CP041305.1 Cytobacillus ciccensis
169 2770704 2770964 - NZ_CP021080.1 Streptomyces pluripotens
170 55507 55794 - NZ_CP020772.1 Halobacillus mangrovi
171 51070 51357 - NZ_CP039710.1 Thermoactinomyces vulgaris
172 2597336 2597581 - NC_018870.1 Thermacetogenium phaeum DSM 12270
173 2631573 2631830 + NZ_LR214441.1 Tessaracoccus lapidicaptus
174 1280690 1280995 - NZ_CP029476.1 Lactobacillus apis
175 1473370 1473654 - NC_016630.1 Filifactor alocis ATCC 35896
176 400825 401121 + NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
177 441101 441397 + NZ_CP025199.1 Bifidobacterium pseudocatenulatum
178 433901 434197 + NZ_CP028341.1 Bifidobacterium adolescentis
179 142703 142987 + NC_022524.1 Bacillus infantis NRRL B-14911
180 108312 108587 + NZ_CP019573.1 Abyssicoccus albus
181 4723912 4724214 - NC_013757.1 Geodermatophilus obscurus DSM 43160
182 2415025 2415312 - NZ_AP021875.1 Desulfosarcina widdelii
183 430827 431120 + NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571
184 3953468 3953707 - NZ_CP019870.1 Clostridioides difficile
185 5020287 5020547 - NZ_CP009286.1 Paenibacillus stellifer
186 1136707 1136994 - NC_013170.1 Cryptobacterium curtum DSM 15641
187 2983820 2984092 + NZ_CP047156.1 Epidermidibacterium keratini
188 3967720 3967977 - NZ_CP030073.1 Streptomyces cadmiisoli
189 5614573 5614848 + NZ_CP023694.1 Streptomyces coeruleorubidus
190 139997 140281 + NZ_CP012024.1 Bacillus smithii
191 9181266 9181523 - NZ_CP063373.1 Streptomyces ferrugineus
192 3318211 3318450 - NC_016894.1 Acetobacterium woodii DSM 1030
193 731547 731804 + NC_017934.1 Mesotoga prima MesG1.Ag.4.2
194 1405097 1405384 + NC_010337.2 Heliomicrobium modesticaldum Ice1
195 268037 268309 + NZ_CP011366.1 Salinicoccus halodurans
196 92871 93155 + NZ_CP041364.1 Schleiferilactobacillus harbinensis
197 3722124 3722414 + NZ_CP035492.1 Paenibacillus protaetiae
198 1892661 1892918 - NZ_CP019606.1 Tessaracoccus aquimaris
199 121222 121509 + NZ_CP012152.1 Anoxybacillus gonensis
200 2976150 2976434 + NZ_CP038012.1 Sporosarcina pasteurii
201 1209996 1210304 - NZ_CP019400.1 Acidipropionibacterium acidipropionici
202 398995 399282 + NZ_CP045562.1 Fructilactobacillus fructivorans
203 1151835 1152134 + NC_013523.1 Sphaerobacter thermophilus DSM 20745
204 6062991 6063248 + NZ_CP034539.1 Streptomyces cyaneochromogenes
205 5084037 5084312 + NC_021985.1 Streptomyces collinus Tu 365
206 2124065 2124352 - NZ_CP017267.1 Vagococcus teuberi
207 2938514 2938774 - NZ_CP023202.1 Streptomyces xinghaiensis S187
208 1549273 1549578 - NZ_CP015444.1 Lactobacillus helveticus
209 1825868 1826110 - NZ_CP035130.1 Gudongella oleilytica
210 172246 172530 + NZ_CP038015.1 Paenisporosarcina antarctica
211 251563 251847 + NZ_CP053989.1 Niallia circulans
212 4074394 4074681 - NC_012108.1 Desulfobacterium autotrophicum HRM2
213 4281644 4281958 + NZ_CP029254.1 Streptomyces spongiicola
214 2071902 2072189 - NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
215 2751523 2751783 - NZ_CP031194.1 Streptomyces paludis
216 2496256 2496546 - NZ_CP017237.1 Moorella thermoacetica
217 129110 129400 + NZ_CP019699.1 Novibacillus thermophilus
218 129335 129574 + NC_014377.1 Thermosediminibacter oceani DSM 16646
219 1869840 1870142 + NZ_CP011232.1 Kosmotoga pacifica
220 633703 633990 + NZ_CP009761.1 Parvimonas micra
221 2973315 2973554 - NC_008261.1 Clostridium perfringens ATCC 13124
222 7136848 7137108 - NZ_LN831776.1 Paenibacillus riograndensis SBR5
223 1689963 1690229 - NZ_AP012322.1 Bifidobacterium angulatum DSM 20098 = JCM 7096
224 331507 331767 + NC_008578.1 Acidothermus cellulolyticus 11B
225 1566911 1567207 - NZ_CP045605.1 Limosilactobacillus reuteri
226 3634291 3634566 - NZ_CP033433.1 Cohnella candidum
227 1456642 1456884 - NZ_AP013035.1 Thermosulfidibacter takaii ABI70S6
228 4053982 4054296 + NZ_CP029188.1 Streptomyces tirandamycinicus
229 1021477 1021731 + NC_017464.1 Ignavibacterium album JCM 16511
230 431743 432027 + NZ_CP017560.1 Sporosarcina ureilytica
231 138844 139128 + NZ_CP042593.1 Bacillus dafuensis
232 236814 237101 + NZ_LS483306.1 Enterococcus cecorum
233 2968883 2969200 - NZ_CP034279.1 Streptomyces ficellus
234 4348938 4349195 + NZ_CP015866.1 Streptomyces parvulus
235 4763887 4764144 + NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
236 616424 616747 + NZ_CP030862.1 Streptomyces globosus
237 1380496 1380807 - NZ_CP029544.1 Lactobacillus helsingborgensis
238 1740995 1741300 - NZ_CP020468.1 Actinomyces gaoshouyii
239 1867299 1867595 + NZ_CP042829.1 Tepidiforma bonchosmolovskayae
240 3873688 3873948 - NZ_CP019457.1 Streptomyces lydicus
241 4613686 4614009 - NZ_CP070326.1 Streptomyces noursei
242 2015546 2015854 - NC_006085.1 Cutibacterium acnes KPA171202
243 3077390 3077641 - NZ_CP048104.1 Kroppenstedtia pulmonis
244 1207488 1207775 + NZ_CP061799.1 Desulfonema limicola
245 2216280 2216528 + NZ_AP019307.1 Nocardioides baekrokdamisoli
246 1805485 1805793 + NZ_CP040635.1 Acidipropionibacterium jensenii
247 4436270 4436533 + NZ_CP016616.1 Microvirga ossetica
248 1993354 1993635 - NZ_CP010904.1 Kiritimatiella glycovorans
249 7502687 7502944 + NC_016582.1 Streptomyces bingchenggensis BCW-1
250 314506 314790 + NC_013216.1 Desulfofarcimen acetoxidans DSM 771
251 4776789 4777046 + NZ_CP023703.1 Streptomyces galilaeus
252 4046534 4046821 - NZ_CP016020.1 Bacillus weihaiensis
253 2115019 2115306 + NZ_CP015108.1 Sporosarcina ureae
254 3966086 3966409 - NZ_CP023691.1 Streptomyces platensis
255 1877751 1878005 + NZ_CP024201.1 Caulobacter mirabilis
256 6979817 6980104 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
257 560998 561237 + NC_009922.1 Alkaliphilus oremlandii OhILAs
258 241328 241579 + NZ_CP048103.1 Kroppenstedtia eburnea
259 5035406 5035660 - NZ_CP017147.1 Bosea vaviloviae
260 3560170 3560487 - NC_016109.1 Kitasatospora setae KM-6054
261 2341130 2341414 + NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
262 1788646 1788903 + NZ_CP021434.1 Tumebacillus avium
263 2379832 2380131 - NZ_CP023434.1 Suicoccus acidiformans
264 3983741 3984001 + NZ_CP016809.1 Paenibacillus ihbetae
265 280366 280605 + NZ_CP014204.2 Clostridium baratii
266 6468066 6468326 + NZ_CP065050.1 Streptomyces solisilvae
267 3482432 3482707 - NZ_CP072931.1 Streptomyces auratus AGR0001
268 2377577 2377864 - NZ_AP021874.1 Desulfosarcina alkanivorans
269 1682536 1682802 + NZ_CP062948.1 Bifidobacterium lemurum
270 482850 483125 - NZ_CP015079.1 Nocardioides dokdonensis FR1436
271 6046807 6047064 + NZ_CP022744.1 Streptomyces lincolnensis
272 692512 692754 + NZ_LT635772.1 Anaerococcus mediterraneensis
273 345059 345313 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
274 2541988 2542275 - NZ_CP013862.1 Lentibacillus amyloliquefaciens
275 3729019 3729276 - NZ_CP011340.1 Streptomyces pristinaespiralis
276 359432 359731 - NZ_LS974202.1 Mesotoga infera
277 1134479 1134775 + NZ_CP016757.1 Cloacibacillus porcorum
278 4845101 4845391 - NZ_CP045293.1 Paenibacillus guangzhouensis
279 2577258 2577545 - NZ_CP011361.2 Salimicrobium jeotgali
280 6565609 6565863 - NC_013729.1 Kribbella flavida DSM 17836
281 3214497 3214820 - NZ_CP023701.1 Streptomyces subrutilus
282 5201607 5201930 + NZ_CP023688.1 Streptomyces rimosus
283 2050522 2050824 - NZ_CP031356.1 Brachybacterium saurashtrense
284 1398239 1398541 - NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214
285 1435367 1435669 - NZ_CP007287.1 Bifidobacterium coryneforme
286 2487479 2487733 + NZ_LN849456.1 Devriesea agamarum
287 2518284 2518526 - NZ_CP022413.2 Blautia hansenii DSM 20583
288 1149805 1150101 + NZ_CP018044.1 Bifidobacterium choerinum
289 1161396 1161692 + NC_008278.1 Frankia alni ACN14a
290 3303108 3303431 - NZ_CP072827.1 Streptomyces mobaraensis NBRC 13819 = DSM 40847
291 252302 252598 + NZ_AP012334.1 Scardovia inopinata JCM 12537
292 1719617 1719922 + NZ_LT635457.1 Actinomyces pacaensis
293 288223 288513 - NZ_CP026363.1 Brevibacillus agri
294 131673 131960 + NZ_CP024848.1 Oceanobacillus zhaokaii
295 370092 370400 + NC_021064.1 Cutibacterium avidum 44067
296 268473 268763 + NZ_LR134338.1 Brevibacillus brevis
297 2879634 2879903 - NC_009937.1 Azorhizobium caulinodans ORS 571
298 6594835 6595089 - NZ_CP029550.1 Methylobacterium durans
299 82930 83169 + NZ_CP014150.1 Paeniclostridium sordellii
300 2650583 2650885 - NC_013172.1 Brachybacterium faecium DSM 4810
301 1373243 1373530 - NZ_CP018622.1 Virgibacillus dokdonensis
302 3500636 3500896 - NZ_CP060404.1 Streptomyces buecherae
303 675479 675736 + NZ_CP036250.1 Egicoccus halophilus
304 7663827 7664123 - NC_014666.1 Frankia inefficax
305 2602153 2602407 - NZ_CP044117.1 Roseomonas mucosa
306 2490633 2490920 - NC_011768.1 Desulfatibacillum aliphaticivorans
307 30247 30546 - NZ_LT906441.1 Cutibacterium granulosum
308 348791 349078 - NZ_CP070511.1 Parageobacillus toebii
309 397005 397310 + NZ_CP009245.1 Corynebacterium aquilae DSM 44791
310 1454362 1454649 - NZ_CP032382.1 Chryseolinea soli
311 311702 311995 + NC_019897.1 Thermobacillus composti KWC4
312 3099158 3099445 - NZ_CP014342.1 Geobacillus subterraneus
313 6131390 6131683 - NZ_AP019400.1 Cohnella abietis
314 1456203 1456460 - NZ_CP041146.1 Nocardioides humi
315 1059826 1060128 + NZ_CP023564.1 Brachybacterium ginsengisoli
316 1940357 1940596 - NZ_CP068564.1 Keratinibaculum paraultunense
317 2647443 2647715 - NC_014550.1 Glutamicibacter arilaitensis Re117
318 2582964 2583263 + NZ_CP034438.1 Flaviflexus salsibiostraticola
319 930629 930931 - NZ_CP022316.1 Brachybacterium avium
320 482113 482400 - NZ_CP016622.1 Parageobacillus thermoglucosidasius
321 148860 149147 + NZ_CP017962.1 Virgibacillus halodenitrificans
322 152918 153208 + NZ_CP041666.1 Radiobacillus deserti
323 129309 129596 + NC_006510.1 Geobacillus kaustophilus HTA426
324 2822961 2823248 + NZ_CP061470.1 Geobacillus zalihae
325 143739 144026 - NZ_CP018058.1 Geobacillus thermocatenulatus
326 2266765 2267052 - NZ_CP061472.1 Geobacillus thermoleovorans
327 3758050 3758289 - NC_014624.2 Eubacterium callanderi
328 2165340 2165579 - NZ_CP029487.1 Eubacterium maltosivorans
329 1377887 1378126 + NZ_CP019962.1 Eubacterium limosum
330 2781411 2781665 - NZ_LT906459.1 Odoribacter splanchnicus
331 2142085 2142390 - NC_012704.1 Corynebacterium kroppenstedtii DSM 44385
332 5070071 5070394 + NZ_CP010407.1 Streptomyces vietnamensis
333 4555990 4556313 + NZ_CP023693.1 Streptomyces cinereoruber
334 5424246 5424569 + NZ_CP071139.1 Streptomyces nojiriensis
335 1542933 1543235 + NZ_CP023563.1 Brachybacterium vulturis
336 418970 419275 + NZ_CP008944.1 Corynebacterium atypicum
337 1842343 1842597 + NC_015259.1 Polymorphum gilvum SL003B-26A1
338 984171 984443 + NC_011978.1 Thermotoga neapolitana DSM 4359
339 3874523 3874783 + NC_016111.1 Streptomyces cattleya NRRL 8057 = DSM 46488
340 129688 129975 + NZ_CP024035.1 Priestia aryabhattai
341 627761 628063 + NC_014165.1 Thermobispora bispora DSM 43833
342 193441 193722 - NZ_CP046314.1 Gemella morbillorum
343 3900845 3901102 - NZ_CP059164.1 Nocardioides ungokensis
344 2478235 2478489 - NZ_CP033896.1 Corynebacterium choanae
345 4606303 4606626 + NZ_CP029196.1 Streptomyces venezuelae
346 563389 563694 + NZ_CP053642.1 Actinomyces marmotae
347 2316216 2316491 - NC_007795.1 Staphylococcus aureus subsp. aureus NCTC 8325
348 1047586 1047840 + NZ_CP061800.1 Desulfonema magnum
349 1761659 1761940 - NZ_LR134484.1 Gemella haemolysans
350 1282516 1282788 - NZ_CP042260.1 Glutamicibacter halophytocola
351 5092747 5092989 - NZ_CP039126.1 Blautia producta
352 3436645 3436929 - NZ_AP014924.1 Limnochorda pilosa
353 135103 135390 + NC_006270.3 Bacillus licheniformis DSM 13 = ATCC 14580
354 1728916 1729191 - NZ_LT906464.1 Staphylococcus muscae
355 631792 632064 - NZ_CP009312.1 Lawsonella clevelandensis
356 143568 143855 + NZ_LT603683.1 Bacillus glycinifermentans
357 1621763 1622017 - NZ_LR134357.1 Actinomyces israelii
358 1298190 1298447 - NZ_LR134350.1 Actinomyces howellii
359 2492862 2493134 - NZ_CP033081.1 Glutamicibacter nicotianae
360 3237305 3237568 + NZ_CP007128.1 Gemmatirosa kalamazoonesis
361 167583 167870 + NZ_CP023665.1 Bacillus paralicheniformis
362 1276380 1276637 + NZ_LR134363.1 Actinomyces slackii
363 4619249 4619506 + NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
364 2207925 2208227 - NZ_AP022577.1 Mycolicibacterium aubagnense
365 4606160 4606417 + NZ_CP023407.1 Streptomyces fungicidicus
366 215307 215546 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
367 4212092 4212349 - NZ_CP020569.1 Streptomyces gilvosporeus
368 5306944 5307267 + NZ_CP059991.1 Streptomyces gardneri
369 716327 716584 + NZ_CP035504.1 Kocuria indica
370 395061 395366 + NZ_CP011541.1 Corynebacterium epidermidicanis
371 3450598 3450888 + NZ_CP008876.1 Terribacillus goriensis
372 4335418 4335675 + NZ_CP022310.1 Streptomyces calvus
373 70748 71044 + NZ_CP065061.1 Streptococcus equi subsp. zooepidemicus
374 2305354 2305653 - NZ_LT906453.1 Dermatophilus congolensis
375 650689 650979 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
376 142995 143282 + NC_004193.1 Oceanobacillus iheyensis HTE831
377 1915092 1915346 - NZ_AP018907.1 Blastochloris tepida
378 1331498 1331752 + NZ_CP022295.1 Nocardioides aromaticivorans
379 142634 142891 + NZ_AP021853.1 Sporolactobacillus terrae
380 3549218 3549475 - NZ_LN831790.1 Streptomyces leeuwenhoekii
381 884506 884805 - NZ_CP035806.1 Leucobacter triazinivorans
382 3265732 3266019 + NZ_CP064060.1 Anoxybacillus caldiproteolyticus
383 1170456 1170737 + NC_013204.1 Eggerthella lenta DSM 2243
384 1194976 1195263 + NZ_CP017703.1 Aeribacillus pallidus
385 502363 502605 + NZ_CP030280.1 Blautia argi
386 2111278 2111517 - NC_014654.1 Halanaerobium hydrogeniformans
387 2155415 2155702 - NZ_CP012047.1 Tetragenococcus halophilus
388 4859486 4859737 + NZ_LR134501.1 Nocardiopsis dassonvillei
389 1523035 1523316 - NZ_LT906446.1 Megamonas hypermegale
390 267500 267802 + NZ_LR026975.1 Mycolicibacterium hassiacum DSM 44199
391 2564479 2564754 + NZ_CP060713.1 Nocardioides mesophilus
392 4737088 4737375 + NZ_CP018866.1 Sutcliffiella cohnii
393 3130666 3130920 - NZ_CP066049.1 Actinomyces naeslundii
394 2053687 2053941 - NZ_CP066060.1 Actinomyces oris
395 3408822 3409076 + NZ_LR134477.1 Actinomyces viscosus
396 2583942 2584247 - NZ_CP041091.1 Nocardioides sambongensis
397 4257363 4257632 - NZ_CP020330.1 Martelella mediterranea DSM 17316
398 59478 59765 - NZ_CP015438.1 Anoxybacillus amylolyticus
399 1292180 1292482 + NZ_LS483464.1 Corynebacterium renale
400 336471 336713 + NC_012778.1 [Eubacterium] eligens ATCC 27750
401 3622926 3623216 - NZ_CP014167.1 Paenibacillus yonginensis
402 2961768 2962037 - NZ_CP045875.1 Heliorestis convoluta
403 1211089 1211391 - NZ_AP022615.1 Mycobacterium heidelbergense
404 802175 802435 + NC_000962.3 Mycobacterium tuberculosis H37Rv
405 2745935 2746186 - NZ_CP041690.1 Youhaiella tibetensis
406 576330 576581 + NZ_CP013290.1 Janibacter indicus
407 2503560 2503829 + NZ_AP022595.1 Mycolicibacterium sarraceniae
408 425208 425510 + NZ_CP039247.1 Corynebacterium endometrii
409 1209131 1209430 + NZ_CP026734.1 Brevibacterium linens
410 1212749 1213006 + NC_015635.1 Microlunatus phosphovorus NM-1
411 2167442 2167738 + NZ_CP014699.1 Streptococcus pantholopis
412 2005815 2006090 - NZ_LR134479.1 Rothia aeria
413 616223 616480 + NZ_CP066802.1 Actinomyces weissii
414 1276176 1276478 - NZ_AP022596.1 Mycolicibacterium helvum
415 2716867 2717142 - NZ_CP031264.1 Streptacidiphilus bronchialis
416 405063 405308 + NZ_CP048436.1 Flavonifractor plautii
417 5606004 5606258 - NZ_CP043538.1 Methylobacterium mesophilicum SR1.6/6
418 1801529 1801813 + NZ_CP021330.1 Maritalea myrionectae
419 460755 461057 + NZ_CP011542.1 Corynebacterium mustelae
420 2922607 2922900 - NC_022997.1 Hyphomicrobium nitrativorans NL23
421 2209418 2209687 + NZ_CP039546.1 Methylorubrum populi
422 2357129 2357425 + NC_010505.1 Methylobacterium radiotolerans JCM 2831
423 4373963 4374220 + NZ_AP022871.1 Phytohabitans suffuscus
424 780010 780312 - NZ_CP068161.1 Corynebacterium propinquum
425 990787 991098 - NZ_CP007519.1 Trueperella pyogenes
426 1061995 1062282 - NZ_CP022315.1 Virgibacillus phasianinus
427 170776 171063 - NZ_CP022437.1 Virgibacillus necropolis
428 2077825 2078085 - NZ_LT985188.1 Micropruina glycogenica
429 1980149 1980424 - NC_014925.1 Staphylococcus pseudintermedius HKU10-03
430 1856539 1856793 - NC_012803.1 Micrococcus luteus NCTC 2665
431 944439 944741 + NZ_CP045572.1 Nonomuraea nitratireducens
432 464031 464327 + NZ_CP022544.1 Bifidobacterium pseudolongum
433 4910642 4910941 - NC_013510.1 Thermomonospora curvata DSM 43183
434 231408 231701 - NZ_CP058235.1 Bartonella alsatica
435 3140687 3140929 - NZ_LR699011.1 Roseburia hominis
436 471865 472167 + NZ_LT906467.1 Corynebacterium imitans
437 2004754 2005053 + NZ_CP065682.1 Brevibacterium casei
438 1760007 1760306 - NZ_CP044548.2 Janibacter melonis
439 1661897 1662157 + NZ_CP041694.1 Cellulosimicrobium cellulans
440 1279694 1279969 + NZ_CP027770.1 Staphylococcus felis
441 647411 647686 + NZ_CP016076.1 Actinoalloteichus fjordicus
442 3418272 3418574 - NZ_CP013979.1 Agromyces aureus
443 256819 257079 + NC_022198.1 Corynebacterium argentoratense DSM 44202
444 1273519 1273818 + NZ_CP025333.1 Brevibacterium aurantiacum
445 1709749 1710054 + NZ_CP014228.1 Actinomyces radicidentis
446 2427648 2427956 - NZ_LR134406.1 Arachnia propionica
447 4369137 4369394 - NZ_CP022657.1 Tumebacillus algifaecis
448 374119 374403 + NC_014836.1 Desulfurispirillum indicum S5
449 1129797 1130051 + NZ_CP029479.1 Phenylobacterium parvum
450 3793302 3793589 - NZ_CP011937.1 Bacillus velezensis
451 137952 138239 + NZ_CP053376.1 Bacillus amyloliquefaciens
452 136992 137279 + NC_000964.3 Bacillus subtilis subsp. subtilis str. 168
453 495545 495802 + NZ_LR698967.1 Corynebacterium ammoniagenes
454 4391355 4391609 + NZ_CP021112.1 Pseudorhodoplanes sinuspersici
455 310390 310671 - NC_014643.1 Rothia dentocariosa ATCC 17931
456 272980 273267 + NZ_CP033052.1 Bacillus vallismortis
457 136933 137220 + NZ_CP048852.1 Bacillus tequilensis
458 136693 136980 + NZ_CP051464.1 Bacillus mojavensis
459 136819 137106 + NZ_CP034943.1 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499
460 106713 107000 + NZ_CP013984.1 Bacillus inaquosorum
461 1872422 1872709 - NZ_CP029364.1 Bacillus halotolerans
462 981525 981788 - NZ_CP049255.1 Microbacterium endophyticum
463 56566 56862 + NZ_LR594050.1 Streptococcus porcinus
464 261427 261702 - NZ_CP015235.1 Rhodococcus fascians D188
465 493217 493474 + NZ_CP009251.1 Corynebacterium stationis
466 2867658 2867960 - NZ_CP011502.1 Aeromicrobium erythreum
467 163744 164034 - NZ_AP017312.1 Aneurinibacillus soli
468 1661873 1662133 - NZ_CP032788.1 Corynebacterium xerosis
469 1114497 1114754 + NC_013595.1 Streptosporangium roseum DSM 43021
470 567822 568115 + NZ_AP019773.1 Bartonella quintana
471 4558152 4558415 - NZ_CP022752.1 Actinopolyspora erythraea
472 1491052 1491300 - NZ_CP014334.1 Fervidobacterium islandicum
473 1823415 1823654 - NZ_CP060782.1 Sphingomonas sediminicola
474 3257118 3257417 + NZ_CP049863.1 Leucobacter viscericola
475 853902 854204 - NZ_CP038436.1 Nocardioides seonyuensis
476 287869 288150 + NZ_CP030032.1 Bradymonas sediminis
477 1222271 1222516 - NC_009718.1 Fervidobacterium nodosum Rt17-B1
478 4100217 4100486 - NZ_CP029553.1 Methylobacterium terrae
479 551340 551642 + NZ_CP017812.1 Boudabousia tangfeifanii
480 2080422 2080682 + NZ_LT906481.1 Corynebacterium urealyticum
481 486283 486522 - NZ_CP060780.1 Sphingomonas daechungensis
482 1965972 1966268 + NZ_CP015367.1 Methylobacterium phyllosphaerae
483 2678567 2678863 + NZ_CP003811.1 Methylobacterium oryzae CBMB20
484 3069095 3069394 - NC_014830.1 Intrasporangium calvum DSM 43043
485 694266 694559 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
486 4435471 4435770 - NZ_CP011112.1 Luteipulveratus mongoliensis
487 1448892 1449140 - NC_017095.1 Fervidobacterium pennivorans DSM 9078
488 2728348 2728623 - NZ_CP015453.1 Dietzia psychralcaliphila
489 890719 890994 - NC_011295.1 Coprothermobacter proteolyticus DSM 5265
490 1750418 1750669 + NZ_CP053086.1 Pelagibacterium halotolerans
491 2429828 2430133 - NZ_CP028913.1 Agromyces badenianii
492 908396 908698 + NC_015671.1 Cellulomonas gilvus ATCC 13127
493 5777922 5778173 - NZ_CP022753.1 Nocardiopsis gilva YIM 90087
494 3227642 3227890 + NZ_CP038267.1 Nocardioides euryhalodurans
495 2217556 2217816 - NZ_AP022603.1 Mycolicibacterium fallax
496 2534510 2534785 - NZ_CP015449.1 Dietzia lutea
497 1421030 1421332 + NC_011144.1 Phenylobacterium zucineum HLK1
498 2948389 2948679 + NC_009719.1 Parvibaculum lavamentivorans DS-1
499 625557 625859 + NZ_CP012117.1 Dermabacter vaginalis
500 955632 955913 + NZ_CP045529.1 Luteimicrobium xylanilyticum
501 1077454 1077753 + NZ_CP018099.1 Caldithrix abyssi DSM 13497
502 4712067 4712360 - NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
503 126368 126652 + NC_010556.1 Exiguobacterium sibiricum 255-15
504 659869 660138 + NZ_CP004393.1 Celeribacter indicus
505 1397711 1398004 + NZ_AP022618.1 Mycolicibacterium insubricum
506 3106296 3106550 - NC_017584.1 Rhodospirillum rubrum F11
507 3147382 3147633 + NZ_CP035810.1 Brevibacterium luteolum
508 1363357 1363662 - NZ_CP066065.1 Schaalia meyeri
509 219474 219725 + NZ_CP058670.1 Chryseoglobus indicus
510 5034401 5034694 + NZ_AP022616.1 Mycolicibacterium phocaicum
511 868068 868310 + NZ_LT632322.1 Murdochiella vaginalis
512 397601 397879 + NZ_CP030126.1 Indioceanicola profundi
513 3503070 3503363 + NZ_CP035495.1 Xylanimonas allomyrinae
514 2554008 2554313 + NZ_CP018135.1 Neomicrococcus aestuarii
515 938274 938516 + NZ_CP067016.1 Anaerococcus obesiensis
516 322973 323215 + NZ_CP066014.1 Anaerococcus vaginalis
517 1529172 1529474 + NZ_CP035491.1 Agromyces protaetiae
518 1107957 1108211 + NC_015514.1 Cellulomonas fimi ATCC 484
519 8754183 8754482 - NC_019673.1 Saccharothrix espanaensis DSM 44229
520 2337331 2337603 - NZ_CP034412.1 Glutamicibacter creatinolyticus
521 3880098 3880340 - NZ_LR027880.1 Roseburia intestinalis L1-82
522 4113272 4113535 - NC_016906.1 Gordonia polyisoprenivorans VH2
523 7630341 7630604 - NC_009142.1 Saccharopolyspora erythraea NRRL 2338
524 5331767 5332030 + NZ_CP033972.1 Gordonia insulae
525 641221 641523 + NZ_LS483423.1 Jonesia denitrificans
526 3495656 3495919 + NZ_CP016793.1 Lentzea guizhouensis
527 716154 716447 + NC_015588.1 Isoptericola variabilis 225
528 1018793 1019092 + NZ_CP049933.1 Leucobacter coleopterorum
529 10404795 10405094 - NZ_CP034550.1 Saccharothrix syringae
530 1275776 1276057 + NC_013947.1 Stackebrandtia nassauensis DSM 44728
531 1729369 1729662 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
532 966401 966703 + NZ_CP039291.1 Cellulomonas shaoxiangyii
533 688035 688337 - NZ_CP061344.1 Microbacterium hominis
534 2956006 2956308 - NC_014151.1 Cellulomonas flavigena DSM 20109
535 1586783 1587094 - NC_009664.2 Kineococcus radiotolerans SRS30216 = ATCC BAA-149
536 675278 675544 - NZ_CP041659.1 Sphingomonas xanthus
537 1331729 1331983 + NZ_CP013002.1 Caulobacter henricii
538 2805211 2805513 - NZ_CP051884.1 Cellulomonas taurus
539 2309315 2309575 - NZ_CP009249.1 Corynebacterium phocae
540 491262 491552 + NZ_CP044231.1 Microbacterium caowuchunii
541 7589301 7589564 - NZ_CP023445.1 Actinosynnema pretiosum
542 7745645 7745908 - NC_013093.1 Actinosynnema mirum DSM 43827
543 1984857 1985120 + NZ_CP027114.1 Gordonia alkanivorans
544 10122 10385 - NZ_CP059694.1 Gordonia rubripertincta
545 1326853 1327149 + NZ_CP007028.1 Thermocrinis ruber
546 788129 788425 - NC_017161.1 Hydrogenobacter thermophilus TK-6
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_011831.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00252.20 0.98 535 2293.0 same-strand Ribosomal protein L16p/L10e
2 PF00189.22 0.99 537 1565.0 same-strand Ribosomal protein S3, C-terminal domain
3 PF07650.19 0.99 537 1565.0 same-strand KH domain
4 PF00237.21 0.99 537 1206.0 same-strand Ribosomal protein L22p/L17e
5 PF00203.23 0.99 539 889.0 same-strand Ribosomal protein S19
6 PF03947.20 0.99 540 30 same-strand Ribosomal Proteins L2, C-terminal domain
7 PF00181.25 0.99 540 30 same-strand Ribosomal Proteins L2, RNA binding domain
8 PF00573.24 1.0 543 0.0 same-strand Ribosomal protein L4/L1 family
9 PF00338.24 1.0 543 1345.0 same-strand Ribosomal protein S10p/S20e
++ More..