Result : Q7P9E2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative ecotin-like protein |
| NCBI Accession ID | AABW01000001.1 |
| Organism | Rickettsia sibirica (strain ATCC VR-151 / 246) |
| Left | 986531 |
| Right | 986737 |
| Strand | - |
| Nucleotide Sequence | TTGCAAGCAACAAAAAATGCAATGCAAGATTGTAATCGTGTTTGGTTTGGTGGTAAGCTGGAAACAAAAACTTTAGAAGGATGGGGATATAATTATTATATAATCGATCAAGTTAGCGATCACCCTGCTAGTACAATGATGGCATGCCCAAACGTAAAAGCAACCATACAAACGGTTAGTGTATTTTTAGGTGATGAAACATTTTGA |
| Sequence | MQATKNAMQDCNRVWFGGKLETKTLEGWGYNYYIIDQVSDHPASTMMACPNVKATIQTVSVFLGDETF |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | |
| Domain | |
| Functional Category | Others |
| Uniprot ID | Q7P9E2 |
| ORF Length (Amino Acid) | 68 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 942347 | 942553 | + | NC_003103.1 | Rickettsia conorii str. Malish 7 |
| 2 | 876472 | 876669 | + | NC_016929.1 | Rickettsia canadensis str. CA410 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003103.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00206.22 | 1.0 | 2 | 3151.0 | same-strand | Lyase |
| 2 | PF10415.11 | 1.0 | 2 | 3151.0 | same-strand | Fumarase C C-terminus |
| 3 | PF00091.27 | 1.0 | 2 | 887.0 | same-strand | Tubulin/FtsZ family, GTPase domain |
| 4 | PF12327.10 | 1.0 | 2 | 887.0 | same-strand | FtsZ family, C-terminal domain |
| 5 | PF08712.13 | 1.0 | 2 | 267.0 | opposite-strand | Scaffold protein Nfu/NifU N terminal |
| 6 | PF01106.19 | 1.0 | 2 | 267.0 | opposite-strand | NifU-like domain |
| 7 | PF00270.31 | 1.0 | 2 | 2371.5 | opposite-strand | DEAD/DEAH box helicase |
| 8 | PF00271.33 | 1.0 | 2 | 2371.5 | opposite-strand | Helicase conserved C-terminal domain |
| 9 | PF04851.17 | 1.0 | 2 | 2371.5 | opposite-strand | Type III restriction enzyme, res subunit |
| 10 | PF00313.24 | 1.0 | 2 | 4124.0 | opposite-strand | 'Cold-shock' DNA-binding domain |
| 11 | PF00398.22 | 1.0 | 2 | 6649.5 | opposite-strand | Ribosomal RNA adenine dimethylase |
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