Result : Q7NUK7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | AE016825.1 |
| Organism | Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) |
| Left | 2912974 |
| Right | 2913207 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAAAGCCGCCAAAGCGCCGGCCAGCTTCGAAACCGCGCTGGCCCAGCTGGAGGACATCATCCAGGCGATGGACAGCGGCGACATGCCGCTGGAAACAGCCCTTGCCTCCTACAAGCAAGGCACCGAATTGATCAAGTTCTGCCAGGGCAAGCTGGCCGACGCGGAACAGCAGCTGAAAATCCTGGAAAACAACGAACTGAAGACGCTGGATCTGCCCAATGGCCAATGA |
| Sequence | MAKAAKAPASFETALAQLEDIIQAMDSGDMPLETALASYKQGTELIKFCQGKLADAEQQLKILENNELKTLDLPNGQ |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 14500782 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q7NUK7 |
| ORF Length (Amino Acid) | 77 |
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| Conservation Analysis |
No. of Species: 59
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2912974 | 2913207 | + | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 2 | 4310437 | 4310670 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 3 | 903080 | 903313 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 4 | 1776406 | 1776639 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 5 | 1255401 | 1255634 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 6 | 4049180 | 4049413 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 7 | 1231563 | 1231796 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 8 | 3380344 | 3380577 | - | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 9 | 625515 | 625745 | - | NZ_CP059565.1 | Neisseria wadsworthii |
| 10 | 2218010 | 2218234 | - | NZ_CP072524.1 | Neisseria sicca |
| 11 | 228488 | 228718 | + | NZ_CP031700.1 | Neisseria zalophi |
| 12 | 2301291 | 2301482 | + | NZ_CP059567.1 | Neisseria shayeganii |
| 13 | 2127869 | 2128099 | - | NZ_LR134516.1 | Neisseria animaloris |
| 14 | 1921620 | 1921847 | - | NZ_CP039887.1 | Neisseria subflava |
| 15 | 1831086 | 1831313 | + | NZ_CP039886.1 | Neisseria flavescens |
| 16 | 606316 | 606546 | - | NZ_LR134313.1 | Neisseria canis |
| 17 | 1241412 | 1241642 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 18 | 313592 | 313822 | - | NZ_LT906434.1 | Neisseria zoodegmatis |
| 19 | 1165029 | 1165259 | + | NZ_LR134533.1 | Neisseria weaveri |
| 20 | 1021249 | 1021476 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 21 | 2717816 | 2718052 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 22 | 3657526 | 3657756 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 23 | 3403591 | 3403827 | + | NZ_CP021395.1 | Bordetella hinzii |
| 24 | 667994 | 668260 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 25 | 1951278 | 1951544 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 26 | 1680602 | 1680868 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 27 | 2702514 | 2702750 | - | NZ_CP043146.1 | Bordetella holmesii |
| 28 | 1634753 | 1634989 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 29 | 2340340 | 2340528 | - | NC_010645.1 | Bordetella avium 197N |
| 30 | 957665 | 957895 | - | NZ_CP031699.1 | Neisseria animalis |
| 31 | 1107693 | 1107917 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 32 | 3921364 | 3921561 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 33 | 3208904 | 3209125 | - | NC_010170.1 | Bordetella petrii |
| 34 | 1376811 | 1377065 | - | NZ_CP016210.1 | Azoarcus olearius |
| 35 | 4655221 | 4655418 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 36 | 249074 | 249328 | + | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 37 | 505921 | 506166 | - | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 38 | 1552673 | 1552864 | - | NZ_CP038018.1 | Eikenella exigua |
| 39 | 131531 | 131752 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 40 | 1613173 | 1613361 | + | NZ_CP021520.1 | Neisseria meningitidis |
| 41 | 1235125 | 1235370 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 42 | 4793998 | 4794195 | + | NZ_CP046904.1 | Massilia flava |
| 43 | 1539512 | 1539736 | + | NZ_LS483369.1 | Neisseria cinerea |
| 44 | 2025565 | 2025795 | + | NZ_CP016172.1 | Bordetella flabilis |
| 45 | 2121586 | 2121774 | - | NZ_CP031253.1 | Neisseria lactamica |
| 46 | 2905 | 3129 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 47 | 1532234 | 1532428 | + | NZ_CP028324.1 | Massilia armeniaca |
| 48 | 2632503 | 2632748 | - | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 49 | 785441 | 785629 | + | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 50 | 3017554 | 3017799 | - | NZ_CP059467.1 | Aromatoleum bremense |
| 51 | 2273447 | 2273650 | - | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 52 | 2786351 | 2786626 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 53 | 1721436 | 1721672 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 54 | 4343453 | 4343641 | + | NZ_LR134302.1 | Achromobacter spanius |
| 55 | 755726 | 755992 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 56 | 2230542 | 2230790 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 57 | 571017 | 571259 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 58 | 3097728 | 3097976 | - | NZ_CP011568.3 | Pandoraea thiooxydans |
| 59 | 2717148 | 2717348 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_005085.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00348.19 | 1.0 | 59 | -10 | same-strand | Polyprenyl synthetase |
| 2 | PF13292.8 | 0.63 | 37 | 952 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.63 | 37 | 952 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.63 | 37 | 952 | same-strand | Transketolase, C-terminal domain |
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