Result : Q7NTG1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein CV_3095 |
| NCBI Accession ID | AE016825.1 |
| Organism | Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) |
| Left | 3380743 |
| Right | 3381012 |
| Strand | + |
| Nucleotide Sequence | ATGTCCGACGAAAAGCAGGAACTGTTTGAATTCCCCTGTCGCTTCCCGCTCAAGATCATGGGCGAGCGGCACGATGAATTCGTCACCACCATCACCGAAGTGGTCCGCGTCCACGCGCCCGATCTCGCCGAGATCGACGTGGTGCTGCGCGAAAGCTCCGGCGGCCGCTTCTATGCGCTGACCGTCACCGTCACCGCCACCTCGCGCCAGCAGCTGGACAACATCTATCTGTCGCTGACCGGCCATCCGATGGTAAAAATGGTCCTCTAA |
| Sequence | MSDEKQELFEFPCRFPLKIMGERHDEFVTTITEVVRVHAPDLAEIDVVLRESSGGRFYALTVTVTATSRQQLDNIYLSLTGHPMVKMVL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | 14500782 |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | Q7NTG1 |
| ORF Length (Amino Acid) | 89 |
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| Conservation Analysis |
No. of Species: 87
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3380743 | 3381012 | + | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 2 | 83104 | 83373 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 3 | 1383706 | 1383975 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 4 | 2131048 | 2131317 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 5 | 1964282 | 1964560 | + | NZ_CP047241.1 | Aquitalea denitrificans |
| 6 | 3604222 | 3604467 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 7 | 3527498 | 3527776 | - | NZ_CP039731.1 | Aquitalea aquatilis |
| 8 | 1068734 | 1069006 | + | NZ_CP038018.1 | Eikenella exigua |
| 9 | 2117411 | 2117680 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 10 | 1545026 | 1545292 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 11 | 1930418 | 1930690 | - | NZ_LT906482.1 | Eikenella corrodens |
| 12 | 908088 | 908357 | - | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 13 | 1512091 | 1512360 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 14 | 552318 | 552587 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 15 | 299754 | 300023 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 16 | 3210395 | 3210676 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 17 | 1409652 | 1409921 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 18 | 1721944 | 1722213 | + | NZ_LR134313.1 | Neisseria canis |
| 19 | 3409064 | 3409372 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 20 | 3594223 | 3594531 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 21 | 967807 | 968115 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 22 | 3281876 | 3282184 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 23 | 3358820 | 3359101 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 24 | 3392010 | 3392291 | - | NC_007510.1 | Burkholderia lata |
| 25 | 281284 | 281553 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 26 | 3888852 | 3889160 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 27 | 3259125 | 3259406 | - | NZ_CP013401.1 | Burkholderia metallica |
| 28 | 2321345 | 2321614 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 29 | 2674228 | 2674494 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 30 | 265786 | 266055 | + | NZ_LR134533.1 | Neisseria weaveri |
| 31 | 2637986 | 2638249 | - | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 32 | 1987961 | 1988269 | - | NZ_CP035900.1 | Burkholderia glumae |
| 33 | 2573164 | 2573433 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 34 | 3374320 | 3374628 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 35 | 4876475 | 4876750 | - | NZ_CP040017.1 | Massilia umbonata |
| 36 | 1320717 | 1321025 | - | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 37 | 424560 | 424868 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 38 | 237327 | 237608 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 39 | 893831 | 894100 | - | NZ_LR134516.1 | Neisseria animaloris |
| 40 | 2935696 | 2935974 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 41 | 3208877 | 3209158 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 42 | 764481 | 764789 | + | NZ_CP009727.1 | Burkholderia mallei |
| 43 | 1317832 | 1318140 | - | NZ_CP008781.1 | Burkholderia pseudomallei |
| 44 | 7033035 | 7033310 | + | NZ_CP036401.1 | Massilia albidiflava |
| 45 | 2462161 | 2462430 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 46 | 830106 | 830327 | - | NZ_CP059564.1 | Alysiella filiformis |
| 47 | 340708 | 340977 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 48 | 2202983 | 2203276 | - | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 49 | 2585845 | 2586117 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 50 | 2198359 | 2198658 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 51 | 3440124 | 3440387 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 52 | 3681916 | 3682191 | - | NZ_CP046904.1 | Massilia flava |
| 53 | 2568340 | 2568609 | - | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 54 | 3919301 | 3919567 | - | NZ_CP019038.1 | Massilia putida |
| 55 | 261513 | 261782 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 56 | 1801119 | 1801388 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 57 | 296027 | 296335 | - | NZ_CP027792.1 | Pulveribacter suum |
| 58 | 214716 | 215015 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 59 | 2483073 | 2483360 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 60 | 33697 | 33945 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 61 | 483516 | 483788 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 62 | 236305 | 236574 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 63 | 2962114 | 2962419 | + | NZ_CP060790.1 | Acidovorax monticola |
| 64 | 1967522 | 1967794 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 65 | 246093 | 246380 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 66 | 2937481 | 2937729 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 67 | 215063 | 215344 | + | NZ_CP016210.1 | Azoarcus olearius |
| 68 | 117674 | 117937 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 69 | 355621 | 355890 | + | NZ_CP029210.1 | Aquabacterium olei |
| 70 | 933872 | 934093 | + | NZ_CP039887.1 | Neisseria subflava |
| 71 | 855744 | 855965 | + | NZ_CP039886.1 | Neisseria flavescens |
| 72 | 145138 | 145410 | + | NZ_CP022579.1 | Oryzomicrobium terrae |
| 73 | 98160 | 98429 | + | NZ_CP031699.1 | Neisseria animalis |
| 74 | 241244 | 241543 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 75 | 1818814 | 1819086 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 76 | 510805 | 511080 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 77 | 250774 | 251067 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 78 | 306398 | 306673 | - | NZ_CP028324.1 | Massilia armeniaca |
| 79 | 243988 | 244236 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 80 | 2481796 | 2482092 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 81 | 142922 | 143194 | + | NC_010645.1 | Bordetella avium 197N |
| 82 | 1411312 | 1411587 | + | NZ_CP034464.1 | Undibacterium parvum |
| 83 | 4773386 | 4773658 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 84 | 2968129 | 2968410 | - | NZ_CP014646.1 | Thauera humireducens |
| 85 | 727568 | 727837 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 86 | 111027 | 111296 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 87 | 3101770 | 3102042 | - | NZ_CP025682.1 | Azoarcus pumilus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_005085.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00768.22 | 0.71 | 62 | 951.0 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 2 | PF07943.15 | 0.71 | 62 | 951.0 | same-strand | Penicillin-binding protein 5, C-terminal domain |
| 3 | PF04055.23 | 0.95 | 83 | 828.5 | same-strand | Radical SAM superfamily |
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