Result : Q7NRL2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | AE016825.1 |
| Organism | Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) |
| Left | 4067989 |
| Right | 4068195 |
| Strand | - |
| Nucleotide Sequence | ATGGCCCGTATTACCGTTGACGACTGCCTGGACCGCATCCAGAACCGTTTTGACCTGACCCTGGCCGCCGCTTACCGCGCCCGCCAAGTGGCTTCCGGCGCCAGCGCCTTTGTCGAGCCGGGCCGCCACAAGCCGACCGTGATCGCCCTGCGTGAAATTGCCGCCGGCCACGTCGGCAAGGAAGTCCTCAACCGCGGCAAGGCCTGA |
| Sequence | MARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGKEVLNRGKA |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | 14500782 |
| Domain | CDD:417484 |
| Functional Category | Others |
| Uniprot ID | Q7NRL2 |
| ORF Length (Amino Acid) | 68 |
++ More..
| Conservation Analysis |
No. of Species: 273
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2884177 | 2884383 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 2 | 4067989 | 4068195 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 3 | 805553 | 805759 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 4 | 2076134 | 2076340 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 5 | 4243693 | 4243899 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 6 | 3680709 | 3680915 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 7 | 1877345 | 1877551 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 8 | 3155511 | 3155717 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 9 | 1014097 | 1014303 | + | NZ_CP064781.1 | Azospira restricta |
| 10 | 274879 | 275085 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 11 | 659321 | 659530 | - | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 12 | 3617639 | 3617845 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 13 | 572721 | 572927 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 14 | 2617121 | 2617327 | - | NZ_AP018738.1 | Ferriphaselus amnicola |
| 15 | 3042328 | 3042534 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 16 | 99285 | 99506 | + | NZ_CP053069.1 | Usitatibacter rugosus |
| 17 | 442949 | 443155 | - | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 18 | 754520 | 754729 | - | NZ_CP058952.1 | Chitinibacter fontanus |
| 19 | 47970 | 48182 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 20 | 2040414 | 2040623 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 21 | 441996 | 442202 | - | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 22 | 2064208 | 2064423 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 23 | 58820 | 59026 | - | NC_007614.1 | Nitrosospira multiformis ATCC 25196 |
| 24 | 465079 | 465285 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 25 | 406787 | 406993 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 26 | 2961938 | 2962153 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 27 | 2211121 | 2211336 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 28 | 4408915 | 4409130 | - | NZ_CP016210.1 | Azoarcus olearius |
| 29 | 492834 | 493040 | - | NZ_CP021106.3 | Nitrosospira lacus |
| 30 | 3003793 | 3003999 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 31 | 58900 | 59112 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 32 | 1638997 | 1639200 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 33 | 2777042 | 2777257 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 34 | 282835 | 283050 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 35 | 254999 | 255214 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 36 | 538756 | 538962 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 37 | 202673 | 202888 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 38 | 1282788 | 1282994 | + | NZ_CP038018.1 | Eikenella exigua |
| 39 | 3351405 | 3351608 | - | NZ_CP011451.1 | Nitrosomonas communis |
| 40 | 1138397 | 1138603 | + | NZ_CP059567.1 | Neisseria shayeganii |
| 41 | 3194415 | 3194630 | + | NZ_CP014646.1 | Thauera humireducens |
| 42 | 625377 | 625583 | + | NZ_LT906482.1 | Eikenella corrodens |
| 43 | 1673016 | 1673222 | - | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 44 | 3489620 | 3489826 | - | NZ_CP013481.2 | Pandoraea apista |
| 45 | 1973479 | 1973685 | - | NZ_CP059571.1 | Neisseria bacilliformis |
| 46 | 96385 | 96606 | + | NZ_CP053073.1 | Usitatibacter palustris |
| 47 | 3259857 | 3260063 | - | NC_023018.2 | Pandoraea pnomenusa |
| 48 | 3144525 | 3144731 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 49 | 3397672 | 3397878 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 50 | 2020313 | 2020519 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 51 | 2914398 | 2914604 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 52 | 1950116 | 1950322 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 53 | 3608515 | 3608721 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 54 | 195916 | 196128 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 55 | 1745026 | 1745232 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 56 | 1227633 | 1227836 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 57 | 3477190 | 3477396 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 58 | 665733 | 665942 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 59 | 2236862 | 2237065 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 60 | 2337063 | 2337266 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 61 | 2384792 | 2384995 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 62 | 1149578 | 1149781 | + | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 63 | 1150450 | 1150653 | + | NZ_CP013414.1 | Burkholderia ubonensis |
| 64 | 2348126 | 2348329 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 65 | 1384220 | 1384423 | + | NZ_CP009727.1 | Burkholderia mallei |
| 66 | 755495 | 755698 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 67 | 1021917 | 1022120 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 68 | 1025764 | 1025967 | + | NZ_CP013401.1 | Burkholderia metallica |
| 69 | 2295508 | 2295711 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 70 | 1031172 | 1031375 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 71 | 786985 | 787188 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 72 | 1205721 | 1205924 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 73 | 1023520 | 1023723 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 74 | 1036578 | 1036781 | + | NC_007510.1 | Burkholderia lata |
| 75 | 1058667 | 1058870 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 76 | 3582669 | 3582872 | + | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 77 | 2777662 | 2777865 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 78 | 3114996 | 3115199 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 79 | 2757974 | 2758177 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 80 | 2073197 | 2073400 | + | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 81 | 3479069 | 3479272 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 82 | 3887969 | 3888172 | - | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 83 | 1957747 | 1957953 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 84 | 2155100 | 2155306 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 85 | 802535 | 802738 | + | NC_021287.1 | Caballeronia insecticola |
| 86 | 3121707 | 3121910 | + | NZ_CP035900.1 | Burkholderia glumae |
| 87 | 979779 | 979982 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 88 | 1247598 | 1247804 | + | NZ_CP059563.1 | Conchiformibius steedae |
| 89 | 2296881 | 2297084 | - | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 90 | 1786519 | 1786722 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 91 | 1862685 | 1862888 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 92 | 993685 | 993891 | + | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 93 | 3152939 | 3153142 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 94 | 1084704 | 1084907 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 95 | 198923 | 199126 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 96 | 750717 | 750923 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 97 | 846442 | 846648 | - | NZ_CP031252.1 | Neisseria elongata |
| 98 | 107017 | 107229 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 99 | 140106 | 140312 | - | NZ_CP047165.1 | Pelistega ratti |
| 100 | 1532140 | 1532346 | + | NZ_LR134516.1 | Neisseria animaloris |
| 101 | 1394753 | 1394956 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 102 | 5214028 | 5214231 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 103 | 2872156 | 2872359 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 104 | 5277687 | 5277890 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 105 | 1627510 | 1627716 | + | NZ_CP031700.1 | Neisseria zalophi |
| 106 | 1303985 | 1304188 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 107 | 2445664 | 2445867 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 108 | 1141291 | 1141494 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 109 | 2036916 | 2037131 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 110 | 566424 | 566630 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 111 | 1281133 | 1281339 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 112 | 287520 | 287726 | - | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 113 | 1389958 | 1390164 | - | NZ_CP031253.1 | Neisseria lactamica |
| 114 | 2582962 | 2583165 | + | NZ_CP019038.1 | Massilia putida |
| 115 | 239687 | 239893 | - | NZ_CP031699.1 | Neisseria animalis |
| 116 | 893612 | 893851 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 117 | 1305722 | 1305925 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 118 | 3328765 | 3328968 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 119 | 1926255 | 1926461 | + | NZ_CP059564.1 | Alysiella filiformis |
| 120 | 1783388 | 1783594 | - | NZ_LR134533.1 | Neisseria weaveri |
| 121 | 923771 | 923977 | - | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 122 | 5186605 | 5186808 | + | NZ_CP028324.1 | Massilia armeniaca |
| 123 | 2250479 | 2250682 | + | NZ_CP046904.1 | Massilia flava |
| 124 | 627139 | 627342 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 125 | 1093992 | 1094195 | - | NZ_CP036401.1 | Massilia albidiflava |
| 126 | 2091660 | 2091863 | - | NZ_CP013235.1 | Collimonas arenae |
| 127 | 1254466 | 1254675 | - | NZ_CP059569.1 | Kingella oralis |
| 128 | 1276350 | 1276553 | + | NZ_CP028901.1 | Algicoccus marinus |
| 129 | 945107 | 945310 | + | NZ_CP054626.1 | Cupriavidus gilardii |
| 130 | 1579865 | 1580068 | + | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 131 | 4337995 | 4338198 | + | NZ_CP043575.1 | Comamonas koreensis |
| 132 | 2487054 | 2487257 | - | NZ_CP013236.1 | Collimonas pratensis |
| 133 | 3229471 | 3229674 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 134 | 3384879 | 3385082 | + | NZ_CP040017.1 | Massilia umbonata |
| 135 | 2554848 | 2555051 | + | NZ_LR134378.1 | Lautropia mirabilis |
| 136 | 1539203 | 1539415 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 137 | 2448813 | 2449016 | - | NZ_CP037993.1 | Herbaspirillum huttiense |
| 138 | 2305336 | 2305539 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 139 | 1046860 | 1047063 | + | NZ_CP039287.1 | Cupriavidus necator H16 |
| 140 | 1987415 | 1987621 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 141 | 1135366 | 1135569 | + | NZ_CP062803.1 | Cupriavidus basilensis |
| 142 | 3547691 | 3547900 | - | NZ_CP011797.1 | Reinekea forsetii |
| 143 | 3982036 | 3982239 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 144 | 1191988 | 1192191 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 145 | 1691845 | 1692048 | - | NZ_CP040709.1 | Inhella inkyongensis |
| 146 | 1017141 | 1017347 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 147 | 908284 | 908487 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 148 | 854713 | 854916 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 149 | 581043 | 581243 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 150 | 1281912 | 1282115 | + | NZ_CP018845.1 | Herbaspirillum robiniae |
| 151 | 1183425 | 1183628 | + | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 152 | 703900 | 704106 | - | NZ_CP060414.1 | Neisseria musculi |
| 153 | 153468 | 153671 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 154 | 2593251 | 2593454 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 155 | 1122959 | 1123165 | - | NZ_LS483369.1 | Neisseria cinerea |
| 156 | 2331385 | 2331588 | - | NC_010170.1 | Bordetella petrii |
| 157 | 689367 | 689570 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 158 | 4160804 | 4161043 | - | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 159 | 627313 | 627516 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 160 | 1887054 | 1887257 | + | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 161 | 2121602 | 2121802 | - | NZ_CP027666.1 | Ottowia oryzae |
| 162 | 308796 | 309002 | + | NZ_CP039886.1 | Neisseria flavescens |
| 163 | 1902899 | 1903102 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 164 | 65194 | 65433 | + | NZ_CP014476.1 | Methylomonas denitrificans |
| 165 | 569119 | 569322 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 166 | 2293507 | 2293710 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 167 | 990609 | 990812 | + | NZ_CP016022.1 | Ralstonia insidiosa |
| 168 | 2887388 | 2887591 | + | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 169 | 1676638 | 1676844 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 170 | 1408929 | 1409135 | - | NZ_CP072524.1 | Neisseria sicca |
| 171 | 2538520 | 2538723 | - | NZ_CP027669.1 | Simplicispira suum |
| 172 | 358980 | 359186 | + | NZ_CP039887.1 | Neisseria subflava |
| 173 | 4646541 | 4646744 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 174 | 624150 | 624353 | - | NC_008344.1 | Nitrosomonas eutropha C91 |
| 175 | 1568246 | 1568452 | - | NZ_LR134313.1 | Neisseria canis |
| 176 | 701941 | 702144 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 177 | 3013234 | 3013437 | - | NZ_CP029210.1 | Aquabacterium olei |
| 178 | 2395672 | 2395875 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 179 | 1786264 | 1786470 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 180 | 3142038 | 3142241 | + | NZ_CP021359.1 | Acidovorax carolinensis |
| 181 | 1867247 | 1867450 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 182 | 726106 | 726309 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 183 | 2945821 | 2946024 | - | NZ_CP027792.1 | Pulveribacter suum |
| 184 | 137516 | 137719 | - | NZ_LR134418.1 | Legionella adelaidensis |
| 185 | 1616576 | 1616776 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 186 | 2928527 | 2928730 | - | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 187 | 4633383 | 4633586 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 188 | 3272779 | 3272979 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 189 | 1718703 | 1718906 | - | NZ_CP043146.1 | Bordetella holmesii |
| 190 | 2089971 | 2090174 | + | NC_010645.1 | Bordetella avium 197N |
| 191 | 2046737 | 2046943 | - | NZ_LT906434.1 | Neisseria zoodegmatis |
| 192 | 2936714 | 2936917 | + | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 193 | 2349125 | 2349328 | + | NZ_CP016440.1 | Bordetella pseudohinzii |
| 194 | 4244099 | 4244302 | + | NZ_CP021395.1 | Bordetella hinzii |
| 195 | 1677164 | 1677367 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 196 | 3163041 | 3163244 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 197 | 1005137 | 1005340 | - | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 198 | 4287988 | 4288191 | - | NZ_CP060790.1 | Acidovorax monticola |
| 199 | 1283159 | 1283362 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 200 | 3955019 | 3955222 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 201 | 3963238 | 3963441 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 202 | 2541632 | 2541835 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 203 | 2774381 | 2774584 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 204 | 2421046 | 2421270 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 205 | 1014784 | 1014987 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 206 | 563286 | 563489 | + | NZ_CP020046.1 | Thiomonas intermedia |
| 207 | 2412330 | 2412539 | + | NZ_CP031124.1 | Ephemeroptericola cinctiostellae |
| 208 | 778132 | 778335 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 209 | 3095224 | 3095427 | + | NZ_CP065748.1 | Delftia lacustris |
| 210 | 3183588 | 3183791 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 211 | 5939420 | 5939623 | - | NZ_LR134302.1 | Achromobacter spanius |
| 212 | 3508446 | 3508649 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 213 | 824206 | 824409 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 214 | 649508 | 649720 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 215 | 3485141 | 3485344 | + | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 216 | 924054 | 924257 | - | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 217 | 4852984 | 4853187 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 218 | 2763497 | 2763709 | - | NZ_CP017715.1 | Marinobacter salinus |
| 219 | 2682294 | 2682497 | - | NZ_CP016172.1 | Bordetella flabilis |
| 220 | 3313121 | 3313324 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 221 | 4355846 | 4356049 | - | NZ_CP034464.1 | Undibacterium parvum |
| 222 | 2013880 | 2014083 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 223 | 2014243 | 2014446 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 224 | 733911 | 734114 | - | NZ_LT615228.1 | Polynucleobacter necessarius |
| 225 | 1081811 | 1082014 | - | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 226 | 220467 | 220691 | - | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 227 | 1013712 | 1013915 | - | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 228 | 712993 | 713196 | + | NZ_CP007501.1 | Polynucleobacter duraquae |
| 229 | 2305957 | 2306157 | - | NZ_CP040882.1 | Sutterella faecalis |
| 230 | 2149961 | 2150164 | - | NZ_CP038254.1 | Legionella israelensis |
| 231 | 4325391 | 4325594 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 232 | 1555762 | 1555968 | - | NZ_CP059565.1 | Neisseria wadsworthii |
| 233 | 6454038 | 6454247 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 234 | 2321722 | 2321946 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 235 | 2394947 | 2395150 | - | NZ_LT906442.1 | Legionella waltersii |
| 236 | 4256838 | 4257047 | + | NZ_CP041352.1 | Casimicrobium huifangae |
| 237 | 1356050 | 1356253 | + | NZ_AP014568.1 | Serpentinomonas raichei |
| 238 | 2187465 | 2187665 | + | NZ_CP068055.1 | Sutterella wadsworthensis |
| 239 | 2260487 | 2260690 | - | NZ_CP013742.1 | Legionella pneumophila |
| 240 | 499279 | 499491 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 241 | 2572243 | 2572446 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 242 | 486161 | 486364 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 243 | 2364257 | 2364481 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 244 | 701266 | 701469 | + | NZ_LN681225.1 | Legionella hackeliae |
| 245 | 2673719 | 2673943 | + | NZ_AP021889.1 | Thiosulfatimonas sediminis |
| 246 | 1040244 | 1040447 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 247 | 1286445 | 1286648 | + | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 248 | 1103717 | 1103920 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 249 | 3749858 | 3750070 | + | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 250 | 294576 | 294788 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 251 | 2463733 | 2463939 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 252 | 80298 | 80522 | - | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 253 | 2538843 | 2539067 | + | NZ_CP054020.1 | Thiomicrorhabdus xiamenensis |
| 254 | 48018 | 48242 | - | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 255 | 4974148 | 4974360 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 256 | 700299 | 700502 | + | NZ_CP023276.1 | Polynucleobacter difficilis |
| 257 | 3888182 | 3888394 | - | NZ_CP020931.1 | Marinobacter salarius |
| 258 | 2761258 | 2761461 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 259 | 143222 | 143434 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 260 | 714221 | 714433 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 261 | 2452819 | 2453028 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 262 | 3420841 | 3421053 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 263 | 2219484 | 2219690 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 264 | 489131 | 489334 | + | NZ_CP061800.1 | Desulfonema magnum |
| 265 | 4572369 | 4572596 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 266 | 4872809 | 4873015 | - | NZ_CP061799.1 | Desulfonema limicola |
| 267 | 168212 | 168412 | + | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 268 | 573095 | 573313 | - | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 269 | 567442 | 567642 | + | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 270 | 3977631 | 3977855 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 271 | 1843969 | 1844175 | + | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 272 | 4219513 | 4219737 | + | NZ_CP061941.1 | Marinomonas algicola |
| 273 | 1647302 | 1647508 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP043473.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13328.8 | 0.96 | 261 | 67.0 | same-strand | HD domain |
| 2 | PF04607.19 | 0.96 | 261 | 67.0 | same-strand | Region found in RelA / SpoT proteins |
| 3 | PF02824.23 | 0.96 | 262 | 67 | same-strand | TGS domain |
| 4 | PF13291.8 | 0.95 | 260 | 67 | same-strand | ACT domain |
| 5 | PF01966.24 | 0.96 | 261 | 67.0 | same-strand | HD domain |
| 6 | PF00625.23 | 0.96 | 261 | 58 | same-strand | Guanylate kinase |
++ More..