Result : Q7NNH7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S6 |
| NCBI Accession ID | BA000045.2 |
| Organism | Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) |
| Left | 464176 |
| Right | 464466 |
| Strand | - |
| Nucleotide Sequence | GTGTCCACCAAGTACGAGACCATGTACATTCTTCGTCCCGACCTCACGGACGAGATCATCGATCAAACGATCACCCGCTACCAGACGCTGCTTGCCGAGCAGGGCGCCGCCCCCGTCGAGACGCAGCACCGGGGCAAGCGCCGCCTGGCCTACGAGCTGAAGAAATTCAAAGAAGGCATCTACGTCCAGATGAACTACGACGCCCCGACAACGGCGGTGGCCGAACTGGAGAAGGCCTTCCGGCTCAGCGAAGAGGTGATCCGGTTTTTAACTGTTCGCGAAGAGGATTAA |
| Sequence | MSTKYETMYILRPDLTDEIIDQTITRYQTLLAEQGAAPVETQHRGKRRLAYELKKFKEGIYVQMNYDAPTTAVAELEKAFRLSEEVIRFLTVREED |
| Source of smORF | Swiss-Prot |
| Function | Binds together with S18 to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00360}. |
| Pubmed ID | 14621292 |
| Domain | CDD:412366 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q7NNH7 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 16
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 464176 | 464466 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
| 2 | 277442 | 277732 | - | NC_022600.1 | Gloeobacter kilaueensis JS1 |
| 3 | 1984497 | 1984805 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 4 | 3841283 | 3841609 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 5 | 2782591 | 2782869 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 6 | 4456577 | 4456891 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 7 | 4342669 | 4342995 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 8 | 1134447 | 1134773 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 9 | 1928813 | 1929085 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 10 | 294541 | 294849 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 11 | 174331 | 174615 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 12 | 1821448 | 1821771 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 13 | 5006860 | 5007186 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 14 | 3811543 | 3811872 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 15 | 1491483 | 1491827 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 16 | 1615891 | 1616235 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP021983.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF16166.7 | 0.69 | 11 | 1171.5 | same-strand | Chloroplast import apparatus Tic20-like |
| 2 | PF01557.20 | 0.69 | 11 | 290 | opposite-strand | Fumarylacetoacetate (FAA) hydrolase family |
| 3 | PF10370.11 | 0.69 | 11 | 290 | opposite-strand | Domain of unknown function (DUF2437) |
++ More..