Result : A8ZV75
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | |
| Organism | Desulfococcus oleovorans (strain DSM 6200 / Hxd3) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MSGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVEESADGSE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A8ZV75 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 390
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 849028 | 849225 | + | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 2 | 2408153 | 2408335 | - | NZ_AP021875.1 | Desulfosarcina widdelii |
| 3 | 2370711 | 2370893 | - | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 4 | 6986794 | 6986976 | + | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 5 | 1214386 | 1214583 | + | NZ_CP061799.1 | Desulfonema limicola |
| 6 | 2483645 | 2483824 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 7 | 1055275 | 1055454 | + | NZ_CP061800.1 | Desulfonema magnum |
| 8 | 312512 | 312691 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 9 | 861320 | 861499 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 10 | 1926041 | 1926223 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 11 | 361016 | 361198 | - | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 12 | 394523 | 394702 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 13 | 644026 | 644211 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 14 | 708343 | 708522 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 15 | 321476 | 321634 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 16 | 240417 | 240596 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 17 | 1286618 | 1286797 | + | NZ_CP027770.1 | Staphylococcus felis |
| 18 | 588757 | 588942 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 19 | 161923 | 162108 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 20 | 322111 | 322305 | + | NC_007759.1 | Syntrophus aciditrophicus SB |
| 21 | 3104344 | 3104523 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 22 | 155333 | 155518 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 23 | 1052258 | 1052437 | - | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 24 | 644800 | 644979 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 25 | 3679889 | 3680068 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 26 | 1106100 | 1106279 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 27 | 2251723 | 2251902 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 28 | 430360 | 430542 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 29 | 3457479 | 3457661 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 30 | 2065163 | 2065345 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 31 | 3227943 | 3228131 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 32 | 136265 | 136453 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 33 | 3024299 | 3024487 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 34 | 3120973 | 3121152 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 35 | 351980 | 352150 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 36 | 2694997 | 2695176 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 37 | 1973321 | 1973500 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 38 | 274206 | 274385 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 39 | 2541472 | 2541657 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 40 | 619094 | 619273 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 41 | 453638 | 453817 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 42 | 446191 | 446373 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 43 | 2712890 | 2713066 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 44 | 3100348 | 3100524 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 45 | 2698216 | 2698392 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 46 | 3188309 | 3188485 | + | NZ_AP019657.1 | Vibrio ponticus |
| 47 | 117310 | 117486 | - | NZ_CP040990.1 | Vibrio furnissii |
| 48 | 2849354 | 2849530 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 49 | 2615975 | 2616151 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 50 | 284313 | 284489 | + | NZ_CP030788.1 | Vibrio campbellii |
| 51 | 2992097 | 2992273 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 52 | 2818486 | 2818662 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 53 | 1539795 | 1539971 | - | NZ_CP019959.1 | Vibrio owensii |
| 54 | 1952275 | 1952451 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 55 | 565649 | 565828 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 56 | 730042 | 730221 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 57 | 796735 | 796914 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 58 | 477830 | 478012 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 59 | 246298 | 246477 | + | NZ_CP047361.1 | Macrococcus canis |
| 60 | 2274087 | 2274263 | - | NZ_CP035688.1 | Vibrio metoecus |
| 61 | 2175483 | 2175659 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 62 | 2616333 | 2616509 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 63 | 4008137 | 4008316 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 64 | 776672 | 776851 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 65 | 492014 | 492190 | + | NZ_CP009467.1 | Vibrio harveyi |
| 66 | 1763148 | 1763327 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 67 | 584037 | 584222 | + | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 68 | 340756 | 340938 | + | NZ_LN879430.1 | Herbinix luporum |
| 69 | 274990 | 275169 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 70 | 3134440 | 3134619 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 71 | 120955 | 121131 | - | NC_013456.1 | Vibrio antiquarius |
| 72 | 186526 | 186702 | - | NZ_CP046314.1 | Gemella morbillorum |
| 73 | 617658 | 617837 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 74 | 757842 | 758027 | - | NZ_CP021323.1 | Kushneria konosiri |
| 75 | 614769 | 614948 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 76 | 1281422 | 1281601 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 77 | 482678 | 482857 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 78 | 2240329 | 2240508 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 79 | 115255 | 115434 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 80 | 499940 | 500119 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 81 | 259283 | 259459 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 82 | 4746255 | 4746440 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 83 | 2099843 | 2100028 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 84 | 5276141 | 5276305 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 85 | 1990619 | 1990798 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 86 | 2327506 | 2327688 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 87 | 413013 | 413189 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 88 | 6667373 | 6667555 | + | NZ_CP063849.1 | Paludibaculum fermentans |
| 89 | 1295066 | 1295248 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 90 | 2080206 | 2080388 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 91 | 351366 | 351542 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 92 | 310516 | 310695 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 93 | 408612 | 408788 | + | NZ_CP046268.1 | Vibrio spartinae |
| 94 | 2489562 | 2489744 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 95 | 411596 | 411781 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 96 | 5742642 | 5742827 | - | NZ_CP016172.1 | Bordetella flabilis |
| 97 | 2893968 | 2894129 | - | NZ_AP018437.1 | Pelolinea submarina |
| 98 | 5840778 | 5840942 | - | NZ_CP043046.1 | Pigmentiphaga aceris |
| 99 | 3239868 | 3240050 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 100 | 372653 | 372835 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 101 | 2454051 | 2454230 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 102 | 438617 | 438778 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 103 | 491188 | 491370 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 104 | 461840 | 462025 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 105 | 974150 | 974350 | + | NC_013501.1 | Rhodothermus marinus DSM 4252 |
| 106 | 640640 | 640819 | + | NZ_CP009761.1 | Parvimonas micra |
| 107 | 1722090 | 1722269 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 108 | 2559355 | 2559537 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 109 | 751758 | 751937 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 110 | 481339 | 481518 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 111 | 2847573 | 2847749 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 112 | 188146 | 188334 | + | NZ_CP034118.1 | Staphylospora marina |
| 113 | 705833 | 705994 | + | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 114 | 2194375 | 2194563 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 115 | 218955 | 219140 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 116 | 591749 | 591928 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 117 | 5806954 | 5807136 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 118 | 316671 | 316847 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 119 | 392034 | 392219 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 120 | 509591 | 509773 | + | NZ_CP030280.1 | Blautia argi |
| 121 | 5489451 | 5489636 | - | NC_013440.1 | Haliangium ochraceum DSM 14365 |
| 122 | 1754743 | 1754919 | - | NZ_LR134484.1 | Gemella haemolysans |
| 123 | 2971543 | 2971719 | - | NC_011753.2 | Vibrio atlanticus |
| 124 | 286799 | 286975 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 125 | 1575162 | 1575347 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 126 | 457000 | 457182 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 127 | 2622831 | 2623010 | + | NZ_CP036200.1 | Shewanella maritima |
| 128 | 643235 | 643417 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 129 | 1791378 | 1791554 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 130 | 244177 | 244341 | + | NC_008593.1 | Clostridium novyi NT |
| 131 | 334801 | 334983 | + | NZ_AP018933.1 | Zymobacter palmae |
| 132 | 3597420 | 3597602 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 133 | 2269448 | 2269630 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 134 | 5281008 | 5281187 | - | NZ_CP020953.1 | Clostridium drakei |
| 135 | 4643014 | 4643193 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 136 | 6150639 | 6150815 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 137 | 2903814 | 2903975 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 138 | 1900262 | 1900423 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 139 | 1122276 | 1122452 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 140 | 6428947 | 6429123 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 141 | 1144602 | 1144778 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 142 | 7129869 | 7130045 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 143 | 7393804 | 7393980 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 144 | 623938 | 624123 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 145 | 5304510 | 5304689 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 146 | 903572 | 903760 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 147 | 5016367 | 5016552 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 148 | 240279 | 240461 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 149 | 2935636 | 2935812 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 150 | 1259853 | 1260035 | + | NZ_CP064781.1 | Azospira restricta |
| 151 | 2864335 | 2864514 | - | NZ_LS483250.1 | Moritella yayanosii |
| 152 | 767101 | 767280 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 153 | 4628786 | 4628965 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 154 | 729037 | 729216 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 155 | 1028524 | 1028709 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 156 | 5795806 | 5795973 | - | NZ_CP013480.3 | Pandoraea norimbergensis |
| 157 | 487897 | 488082 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 158 | 5299595 | 5299777 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 159 | 617820 | 617984 | + | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 160 | 1469821 | 1469982 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 161 | 4430638 | 4430817 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 162 | 2454252 | 2454413 | - | NZ_CP014646.1 | Thauera humireducens |
| 163 | 2456430 | 2456612 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 164 | 1032518 | 1032703 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 165 | 1538173 | 1538358 | - | NZ_CP047165.1 | Pelistega ratti |
| 166 | 176439 | 176621 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 167 | 187746 | 187928 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 168 | 4135309 | 4135488 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 169 | 317422 | 317601 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 170 | 3820690 | 3820872 | - | NZ_CP016210.1 | Azoarcus olearius |
| 171 | 2458064 | 2458240 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 172 | 321677 | 321853 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 173 | 3408390 | 3408569 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 174 | 3016441 | 3016626 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 175 | 383814 | 383999 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 176 | 1206979 | 1207137 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 177 | 3742875 | 3743054 | - | NZ_CP032489.1 | Arachidicoccus soli |
| 178 | 1203486 | 1203665 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 179 | 1544015 | 1544200 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 180 | 4194218 | 4194400 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 181 | 376869 | 377051 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 182 | 431285 | 431473 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 183 | 179085 | 179273 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 184 | 2741060 | 2741239 | - | NZ_CP041345.1 | Tenuifilum thalassicum |
| 185 | 677324 | 677485 | + | NZ_CP043405.1 | Streptococcus ratti |
| 186 | 3080947 | 3081129 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 187 | 5647790 | 5647972 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 188 | 123298 | 123477 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 189 | 6329835 | 6329999 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 190 | 2894237 | 2894410 | - | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 191 | 446217 | 446396 | + | NZ_CP013236.1 | Collimonas pratensis |
| 192 | 874853 | 875029 | + | NZ_LT632322.1 | Murdochiella vaginalis |
| 193 | 1311735 | 1311929 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 194 | 1907470 | 1907664 | + | NZ_CP031555.1 | Thalassospira indica |
| 195 | 571475 | 571636 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 196 | 3227249 | 3227410 | + | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 197 | 3274572 | 3274760 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 198 | 108533 | 108718 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 199 | 1854591 | 1854761 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 200 | 1311757 | 1311951 | + | NZ_CP024199.1 | Thalassospira marina |
| 201 | 2442555 | 2442719 | - | NZ_LR134302.1 | Achromobacter spanius |
| 202 | 4898581 | 4898745 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 203 | 1937077 | 1937235 | + | NZ_CP037755.1 | Pseudocnuella soli |
| 204 | 516004 | 516186 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 205 | 3108371 | 3108547 | - | NZ_AP014635.1 | Vibrio tritonius |
| 206 | 253657 | 253836 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 207 | 2018314 | 2018493 | + | NZ_CP023671.1 | Clostridium septicum |
| 208 | 370429 | 370587 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 209 | 4009744 | 4009926 | - | NZ_CP037951.1 | Parashewanella tropica |
| 210 | 1558441 | 1558623 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 211 | 2323731 | 2323913 | + | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 212 | 720344 | 720523 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 213 | 4334477 | 4334653 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 214 | 292864 | 293046 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 215 | 1973650 | 1973835 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 216 | 1155444 | 1155602 | + | NZ_CP011801.1 | Nitrospira moscoviensis |
| 217 | 5201302 | 5201487 | - | NC_010170.1 | Bordetella petrii |
| 218 | 4506662 | 4506847 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 219 | 3573888 | 3574073 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 220 | 435354 | 435539 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 221 | 5879250 | 5879435 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 222 | 2473103 | 2473261 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 223 | 245872 | 246054 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 224 | 297024 | 297206 | + | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 225 | 1648599 | 1648778 | - | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 226 | 4162564 | 4162746 | - | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 227 | 4157475 | 4157663 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 228 | 4503020 | 4503208 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 229 | 4110661 | 4110822 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 230 | 2966411 | 2966584 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 231 | 296410 | 296580 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 232 | 3150941 | 3151123 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 233 | 2217017 | 2217178 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 234 | 332734 | 332916 | + | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 235 | 4084554 | 4084739 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 236 | 2217199 | 2217384 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 237 | 3742185 | 3742346 | - | NZ_CP039287.1 | Cupriavidus necator H16 |
| 238 | 1805743 | 1805925 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 239 | 2999790 | 2999972 | + | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 240 | 2985187 | 2985369 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 241 | 427185 | 427367 | + | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 242 | 1005855 | 1006037 | + | NZ_CP009727.1 | Burkholderia mallei |
| 243 | 3172246 | 3172428 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 244 | 340012 | 340194 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 245 | 325150 | 325332 | + | NZ_CP013401.1 | Burkholderia metallica |
| 246 | 1626976 | 1627158 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 247 | 337503 | 337685 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 248 | 333528 | 333710 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 249 | 330878 | 331060 | + | NC_007510.1 | Burkholderia lata |
| 250 | 419905 | 420087 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 251 | 354134 | 354316 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 252 | 3492811 | 3492993 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 253 | 431928 | 432110 | + | NZ_CP013414.1 | Burkholderia ubonensis |
| 254 | 2032287 | 2032469 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 255 | 3528892 | 3529053 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 256 | 790478 | 790660 | + | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 257 | 2881730 | 2881912 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 258 | 2908666 | 2908848 | - | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 259 | 256615 | 256797 | + | NC_016901.1 | Shewanella baltica OS678 |
| 260 | 3288889 | 3289071 | - | NZ_CP026111.1 | Paraburkholderia terrae |
| 261 | 2504092 | 2504274 | - | NZ_CP068055.1 | Sutterella wadsworthensis |
| 262 | 1498637 | 1498819 | + | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 263 | 4066167 | 4066349 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 264 | 372099 | 372278 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 265 | 3684021 | 3684203 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 266 | 114364 | 114525 | + | NZ_LS483343.1 | Streptococcus ferus |
| 267 | 968073 | 968255 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 268 | 94504 | 94665 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 269 | 1086916 | 1087077 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 270 | 3701789 | 3701971 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 271 | 6336798 | 6336989 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 272 | 2393612 | 2393794 | + | NZ_CP015958.1 | Paraburkholderia caribensis |
| 273 | 444137 | 444298 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 274 | 1755639 | 1755800 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 275 | 2029754 | 2029915 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 276 | 4505550 | 4505732 | - | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 277 | 2506781 | 2506963 | + | NZ_CP035900.1 | Burkholderia glumae |
| 278 | 1971433 | 1971615 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 279 | 2008773 | 2008955 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 280 | 917741 | 917905 | + | NZ_AP019700.1 | Stella humosa |
| 281 | 4673706 | 4673888 | - | NZ_CP046378.1 | Shewanella algae |
| 282 | 80057 | 80218 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 283 | 309664 | 309846 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 284 | 66831 | 67016 | - | NZ_LT907988.1 | Orrella dioscoreae |
| 285 | 6081776 | 6081946 | + | NC_018025.1 | Desulfomonile tiedjei DSM 6799 |
| 286 | 3353429 | 3353611 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 287 | 3411257 | 3411439 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 288 | 3452174 | 3452356 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 289 | 1516270 | 1516461 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 290 | 878650 | 878811 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 291 | 517291 | 517452 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 292 | 384563 | 384724 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 293 | 2989829 | 2990011 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 294 | 3286281 | 3286463 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 295 | 3568047 | 3568223 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 296 | 3423884 | 3424066 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 297 | 1841510 | 1841695 | - | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 298 | 2795042 | 2795224 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 299 | 274908 | 275066 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 300 | 52852 | 53037 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 301 | 2595213 | 2595374 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 302 | 2952133 | 2952315 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 303 | 2670811 | 2670993 | - | NC_021287.1 | Caballeronia insecticola |
| 304 | 1863940 | 1864125 | - | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 305 | 1368494 | 1368655 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 306 | 4033169 | 4033351 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 307 | 254801 | 254983 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 308 | 183875 | 184036 | + | NZ_CP054624.1 | Cupriavidus gilardii |
| 309 | 1443550 | 1443717 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 310 | 3297620 | 3297802 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 311 | 3266928 | 3267095 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 312 | 4411771 | 4411956 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 313 | 1550375 | 1550560 | - | NZ_CP021395.1 | Bordetella hinzii |
| 314 | 1392445 | 1392636 | + | NZ_CP021106.3 | Nitrosospira lacus |
| 315 | 3262890 | 3263063 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 316 | 2614762 | 2614944 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 317 | 227328 | 227507 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 318 | 1570008 | 1570175 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 319 | 3371899 | 3372066 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 320 | 779301 | 779468 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 321 | 840249 | 840437 | + | NZ_LR134365.1 | Cardiobacterium hominis |
| 322 | 2470889 | 2471080 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 323 | 3084317 | 3084502 | - | NZ_CP028901.1 | Algicoccus marinus |
| 324 | 2909317 | 2909475 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 325 | 874162 | 874344 | + | NZ_CP019352.1 | Lacinutrix venerupis |
| 326 | 3350366 | 3350524 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 327 | 4270760 | 4270936 | + | NZ_CP046904.1 | Massilia flava |
| 328 | 453741 | 453899 | + | NZ_CP035033.1 | Hydrogenovibrio thermophilus |
| 329 | 5417034 | 5417210 | + | NZ_CP040017.1 | Massilia umbonata |
| 330 | 6460146 | 6460322 | - | NZ_CP036401.1 | Massilia albidiflava |
| 331 | 335282 | 335464 | - | NZ_CP019419.1 | Polaribacter reichenbachii |
| 332 | 4159649 | 4159807 | - | NZ_CP065748.1 | Delftia lacustris |
| 333 | 4204456 | 4204614 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 334 | 2873024 | 2873182 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 335 | 204841 | 205023 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 336 | 1497263 | 1497445 | + | NZ_CP020121.1 | Comamonas kerstersii |
| 337 | 1899833 | 1899991 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 338 | 1082059 | 1082232 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 339 | 1906333 | 1906518 | - | NZ_CP031253.1 | Neisseria lactamica |
| 340 | 337871 | 338053 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 341 | 2097090 | 2097251 | + | NZ_CP042582.1 | Hypericibacter adhaerens |
| 342 | 178381 | 178542 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 343 | 1269202 | 1269390 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 344 | 3527670 | 3527837 | - | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 345 | 2350967 | 2351152 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 346 | 2060466 | 2060648 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 347 | 3308328 | 3308510 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 348 | 2320879 | 2321064 | - | NZ_CP031700.1 | Neisseria zalophi |
| 349 | 578508 | 578693 | + | NZ_CP059564.1 | Alysiella filiformis |
| 350 | 2025758 | 2025940 | + | NZ_CP040882.1 | Sutterella faecalis |
| 351 | 1786452 | 1786637 | - | NZ_CP039887.1 | Neisseria subflava |
| 352 | 1960504 | 1960689 | + | NZ_CP039886.1 | Neisseria flavescens |
| 353 | 1270818 | 1271003 | + | NZ_CP046027.1 | Neisseria brasiliensis |
| 354 | 404554 | 404721 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 355 | 1266456 | 1266638 | + | NZ_CP045508.1 | Desulfolutivibrio sulfoxidireducens |
| 356 | 3089828 | 3090031 | - | NZ_CP061038.1 | Sphingomonas alpina |
| 357 | 1923328 | 1923513 | - | NZ_LR134516.1 | Neisseria animaloris |
| 358 | 3099426 | 3099593 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 359 | 3848978 | 3849160 | - | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 360 | 1710606 | 1710767 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 361 | 1774964 | 1775125 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 362 | 1105162 | 1105347 | + | NZ_CP031699.1 | Neisseria animalis |
| 363 | 485928 | 486089 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 364 | 3368301 | 3368504 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 365 | 2492715 | 2492900 | - | NZ_LT906434.1 | Neisseria zoodegmatis |
| 366 | 1747377 | 1747538 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 367 | 2957 | 3118 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 368 | 300122 | 300283 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 369 | 1139578 | 1139754 | + | NZ_CP042306.1 | Sphingomonas panacisoli |
| 370 | 2544540 | 2544731 | - | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 371 | 1952647 | 1952832 | - | NZ_CP072524.1 | Neisseria sicca |
| 372 | 1722642 | 1722827 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 373 | 284690 | 284875 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 374 | 247022 | 247192 | + | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 375 | 1153706 | 1153891 | + | NZ_LR134313.1 | Neisseria canis |
| 376 | 1699349 | 1699534 | + | NZ_LS483369.1 | Neisseria cinerea |
| 377 | 3267572 | 3267748 | + | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 378 | 1249918 | 1250085 | + | NZ_CP030265.1 | Skermanella pratensis |
| 379 | 1203984 | 1204145 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 380 | 367640 | 367804 | + | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 381 | 363046 | 363213 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 382 | 308822 | 308989 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 383 | 932209 | 932394 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 384 | 1224736 | 1224921 | + | NZ_LT906482.1 | Eikenella corrodens |
| 385 | 1369186 | 1369371 | + | NZ_LR134533.1 | Neisseria weaveri |
| 386 | 1059201 | 1059386 | + | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 387 | 2102590 | 2102751 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 388 | 1813366 | 1813527 | + | NZ_CP047045.1 | Terricaulis silvestris |
| 389 | 2915238 | 2915435 | - | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 390 | 1650228 | 1650410 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008344.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00410.21 | 1.0 | 390 | 1476.0 | same-strand | Ribosomal protein S8 |
| 2 | PF00347.25 | 1.0 | 389 | 925.0 | same-strand | Ribosomal protein L6 |
| 3 | PF00861.24 | 0.97 | 379 | 541 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 4 | PF03719.17 | 0.99 | 388 | 13.0 | same-strand | Ribosomal protein S5, C-terminal domain |
| 5 | PF00333.22 | 1.0 | 389 | 13 | same-strand | Ribosomal protein S5, N-terminal domain |
| 6 | PF00828.21 | 0.96 | 376 | 12.0 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 7 | PF00344.22 | 0.99 | 387 | 466 | same-strand | SecY |
| 8 | PF00416.24 | 0.66 | 256 | 2190.0 | same-strand | Ribosomal protein S13/S18 |
| 9 | PF00253.23 | 0.91 | 354 | 1886.0 | same-strand | Ribosomal protein S14p/S29e |
++ More..