* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_005125.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01165.22
|
0.67
|
2
|
2323.0
|
opposite-strand
|
Ribosomal protein S21
|
2
|
PF13083.8
|
0.67
|
2
|
2015.0
|
opposite-strand
|
KH domain
|
3
|
PF00886.21
|
0.67
|
2
|
1756.0
|
opposite-strand
|
Ribosomal protein S16
|
4
|
PF00448.24
|
0.67
|
2
|
213.5
|
opposite-strand
|
SRP54-type protein, GTPase domain
|
5
|
PF02978.21
|
0.67
|
2
|
213.5
|
opposite-strand
|
Signal peptide binding domain
|
6
|
PF02881.21
|
0.67
|
2
|
213.5
|
opposite-strand
|
SRP54-type protein, helical bundle domain
|
7
|
PF00294.26
|
0.67
|
2
|
272.0
|
same-strand
|
pfkB family carbohydrate kinase
|
8
|
PF00459.27
|
0.67
|
2
|
1702.0
|
opposite-strand
|
Inositol monophosphatase family
|
++ More..