Result : Q7NAN6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Nucleoid-associated protein MYCGA6000 |
| NCBI Accession ID | AE015450.2 |
| Organism | Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2)) |
| Left | 843185 |
| Right | 843487 |
| Strand | - |
| Nucleotide Sequence | ATGAATTTTCAAAATTTAGCTAACCAAATGAAAAAGATGCAACGCGAAATGGAAAAGAAGCTTGCAGAATTTGAAGAAAAAGAATATCAATACGAATACAAGAAGTTAATTAAAACAACACTTAAAGGCAATCTGAGAATTGTTAAGCTTGAGATCAATAAAGATCTAATCGATCCAGAAGATCCAGATACTTTACAAGATATGGTAACTGAAGCGATTAATGAAGCGCTTGGTGATCTTGAAAAGAAAAGAGATGAACTCTCTAACTCAATTACCCCACCAATTAAATTTCCTGGATTTTAG |
| Sequence | MNFQNLANQMKKMQREMEKKLAEFEEKEYQYEYKKLIKTTLKGNLRIVKLEINKDLIDPEDPDTLQDMVTEAINEALGDLEKKRDELSNSITPPIKFPGF |
| Source of smORF | Swiss-Prot |
| Function | Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. {ECO:0000255|HAMAP-Rule:MF_00274}. |
| Pubmed ID | 12949158 |
| Domain | CDD:412410 |
| Functional Category | DNA-binding |
| Uniprot ID | Q7NAN6 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 806441 | 806743 | - | NC_018406.1 | Mycoplasma gallisepticum VA94_7994-1-7P |
| 2 | 756014 | 756316 | - | NZ_CP059674.1 | Mycoplasma tullyi |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_018406.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13662.8 | 1.0 | 2 | 291.0 | same-strand | Toprim domain |
| 2 | PF00004.31 | 1.0 | 2 | 3488 | same-strand | ATPase family associated with various cellular activities (AAA) |
| 3 | PF05496.14 | 1.0 | 2 | 3527.0 | same-strand | Holliday junction DNA helicase RuvB P-loop domain |
| 4 | PF05491.15 | 1.0 | 2 | 3527.0 | same-strand | RuvB C-terminal winged helix domain |
| 5 | PF17864.3 | 1.0 | 2 | 3527.0 | same-strand | RuvB AAA lid domain |
| 6 | PF07728.16 | 1.0 | 2 | 3527.0 | same-strand | AAA domain (dynein-related subfamily) |
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