Result : Q7MH89
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Primosomal replication protein N |
| NCBI Accession ID | BA000037.2 |
| Organism | Vibrio vulnificus (strain YJ016) |
| Left | 3059663 |
| Right | 3059965 |
| Strand | - |
| Nucleotide Sequence | ATGACCAATCGAATGGAGCTGAGCGGCACTGTCGTGAAAGATCCGATTCGAAGCCAAAGCCCTGCTGGAATCTCACATTGTCGATTTTGGCTCGAGCATCGCTCGGTAGTGGTTGAGGCGGATTTACCAAGACAAGTTTTCTGTCGAATGCCAGTGGTTGTCAGCGGTAAAGGGTCACAAGACATAACTCAACAAATAGTTTTGGGCAGTAACATTAAGGTAAGTGGCTTTGTTGCTTATCAGACCGGCCGAAATGGCGTAGGTAAATTGGTGTTACATGCCGATGACATAATTCATATTTAA |
| Sequence | MTNRMELSGTVVKDPIRSQSPAGISHCRFWLEHRSVVVEADLPRQVFCRMPVVVSGKGSQDITQQIVLGSNIKVSGFVAYQTGRNGVGKLVLHADDIIHI |
| Source of smORF | Swiss-Prot |
| Function | Binds single-stranded DNA at the primosome assembly site (PAS). {ECO:0000255|HAMAP-Rule:MF_00720}. |
| Pubmed ID | 14656965 |
| Domain | CDD:415809 |
| Functional Category | DNA-binding |
| Uniprot ID | Q7MH89 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 195
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3024992 | 3025294 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 2 | 3231949 | 3232251 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 3 | 361774 | 362076 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 4 | 2785696 | 2785998 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 5 | 2193176 | 2193478 | + | NZ_CP019959.1 | Vibrio owensii |
| 6 | 2614512 | 2614814 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 7 | 789107 | 789409 | + | NC_013456.1 | Vibrio antiquarius |
| 8 | 158585 | 158887 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 9 | 2576562 | 2576864 | - | NZ_AP019657.1 | Vibrio ponticus |
| 10 | 2887187 | 2887489 | - | NZ_CP030788.1 | Vibrio campbellii |
| 11 | 328538 | 328840 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 12 | 2949271 | 2949573 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 13 | 249442 | 249744 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 14 | 3399249 | 3399551 | - | NZ_CP046268.1 | Vibrio spartinae |
| 15 | 105166 | 105468 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 16 | 317647 | 317949 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 17 | 2458806 | 2459108 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 18 | 788550 | 788852 | + | NZ_CP040990.1 | Vibrio furnissii |
| 19 | 2378615 | 2378917 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 20 | 287973 | 288275 | + | NZ_CP033078.1 | Vibrio zhugei |
| 21 | 2178335 | 2178637 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 22 | 6173 | 6475 | + | NZ_CP035688.1 | Vibrio metoecus |
| 23 | 261672 | 261974 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 24 | 1590514 | 1590816 | + | NZ_CP014056.2 | Grimontia hollisae |
| 25 | 29637 | 29939 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 26 | 3207144 | 3207446 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 27 | 2543206 | 2543508 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 28 | 2994834 | 2995136 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 29 | 3619810 | 3620070 | - | NZ_LT615367.1 | Dickeya aquatica |
| 30 | 374099 | 374359 | + | NZ_LR134494.1 | Serratia quinivorans |
| 31 | 434055 | 434315 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 32 | 1917407 | 1917676 | + | NZ_CP065640.1 | Serratia rubidaea |
| 33 | 275655 | 275915 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 34 | 3763376 | 3763660 | - | NZ_CP025799.1 | Dickeya zeae |
| 35 | 372936 | 373196 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 36 | 4651839 | 4652099 | - | NZ_CP071320.1 | Serratia ureilytica |
| 37 | 4853932 | 4854192 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 38 | 904997 | 905281 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 39 | 3293757 | 3294026 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 40 | 383969 | 384229 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 41 | 478746 | 479042 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 42 | 2337339 | 2337599 | + | NZ_CP011254.1 | Serratia fonticola |
| 43 | 3395394 | 3395663 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 44 | 1132205 | 1132489 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 45 | 3277537 | 3277821 | - | NZ_LS483470.1 | Leminorella richardii |
| 46 | 556203 | 556463 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 47 | 1761386 | 1761670 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 48 | 3174244 | 3174528 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 49 | 4198826 | 4199110 | - | NZ_CP046293.1 | Yersinia intermedia |
| 50 | 2054247 | 2054507 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 51 | 892934 | 893218 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 52 | 3960015 | 3960299 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 53 | 3800182 | 3800466 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 54 | 4052820 | 4053104 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 55 | 2162218 | 2162502 | + | NZ_CP007230.1 | Yersinia similis |
| 56 | 3359261 | 3359545 | + | NZ_CP009787.1 | Yersinia rohdei |
| 57 | 4211796 | 4212080 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 58 | 2617500 | 2617760 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 59 | 837803 | 838087 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 60 | 3923322 | 3923606 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 61 | 4000902 | 4001186 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 62 | 3233073 | 3233342 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 63 | 526363 | 526647 | + | NZ_CP043727.1 | Yersinia canariae |
| 64 | 464194 | 464478 | + | NZ_CP032487.1 | Yersinia hibernica |
| 65 | 4736224 | 4736508 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 66 | 516288 | 516548 | + | NZ_LT906479.1 | Serratia ficaria |
| 67 | 1543751 | 1544035 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 68 | 423083 | 423379 | + | NZ_LR134531.1 | Pragia fontium |
| 69 | 1730278 | 1730592 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 70 | 506624 | 506920 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 71 | 606743 | 607027 | + | NZ_CP065534.1 | Lonsdalea populi |
| 72 | 2556906 | 2557190 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 73 | 880596 | 880880 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 74 | 3967676 | 3967960 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 75 | 982024 | 982308 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 76 | 3999324 | 3999608 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 77 | 2773174 | 2773458 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 78 | 428932 | 429216 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 79 | 5336947 | 5337231 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 80 | 3774613 | 3774897 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 81 | 157275 | 157559 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 82 | 671936 | 672220 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 83 | 84119 | 84403 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 84 | 4093133 | 4093447 | - | NZ_LR134201.1 | Cedecea lapagei |
| 85 | 4377757 | 4378071 | - | NZ_CP023525.1 | Cedecea neteri |
| 86 | 3018401 | 3018679 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 87 | 903441 | 903725 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 88 | 2409874 | 2410188 | + | NZ_CP053416.1 | Salmonella bongori |
| 89 | 4630931 | 4631245 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 90 | 4124505 | 4124789 | + | NZ_CP067057.1 | Rahnella aceris |
| 91 | 3020390 | 3020674 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 92 | 4460658 | 4460972 | + | NZ_AP014857.1 | Escherichia albertii |
| 93 | 3382377 | 3382691 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 94 | 3037310 | 3037594 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 95 | 4052830 | 4053114 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 96 | 3891976 | 3892290 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 97 | 3346179 | 3346493 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 98 | 4529797 | 4530111 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 99 | 5279373 | 5279687 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 100 | 415682 | 415966 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 101 | 1303026 | 1303310 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 102 | 525359 | 525643 | + | NZ_CP050150.1 | Hafnia alvei |
| 103 | 4425520 | 4425834 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 104 | 4797216 | 4797530 | - | NZ_CP041247.1 | Raoultella electrica |
| 105 | 2222140 | 2222454 | + | NZ_CP026047.1 | Raoultella planticola |
| 106 | 5089397 | 5089711 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 107 | 1863336 | 1863650 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 108 | 3217592 | 3217906 | + | NZ_CP033744.1 | Citrobacter freundii |
| 109 | 3984610 | 3984870 | - | NZ_LS483422.1 | Providencia heimbachae |
| 110 | 4183111 | 4183425 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 111 | 416194 | 416478 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 112 | 488940 | 489254 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 113 | 580675 | 580989 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 114 | 1084743 | 1085057 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 115 | 210289 | 210603 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 116 | 3371300 | 3371584 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 117 | 4744681 | 4744995 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 118 | 477222 | 477536 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 119 | 5025813 | 5026127 | - | NZ_CP054254.1 | Klebsiella variicola |
| 120 | 3914013 | 3914327 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 121 | 4366246 | 4366560 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 122 | 2889741 | 2890055 | - | NZ_CP038469.1 | Citrobacter tructae |
| 123 | 3076415 | 3076729 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 124 | 3330813 | 3331097 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 125 | 5122238 | 5122552 | - | NZ_CP050508.1 | Raoultella terrigena |
| 126 | 451620 | 451934 | + | NZ_LR134340.1 | Escherichia marmotae |
| 127 | 2145351 | 2145635 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 128 | 4189453 | 4189767 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 129 | 5382323 | 5382637 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 130 | 5506812 | 5507126 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 131 | 3436755 | 3437069 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 132 | 4012874 | 4013158 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 133 | 5513278 | 5513592 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 134 | 4712892 | 4713206 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 135 | 4102250 | 4102564 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 136 | 446891 | 447205 | + | NC_015968.1 | Enterobacter soli |
| 137 | 3961962 | 3962222 | - | NZ_CP048796.1 | Providencia vermicola |
| 138 | 464275 | 464589 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 139 | 3636143 | 3636457 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 140 | 3683214 | 3683528 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 141 | 4070376 | 4070690 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 142 | 2650308 | 2650622 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 143 | 1461609 | 1461923 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 144 | 4870108 | 4870422 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 145 | 2984177 | 2984491 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 146 | 3537220 | 3537534 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 147 | 3319677 | 3319937 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 148 | 3738319 | 3738588 | - | NZ_CP061511.1 | Mixta calida |
| 149 | 3971658 | 3971972 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 150 | 399199 | 399513 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 151 | 3712202 | 3712516 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 152 | 2344199 | 2344483 | - | NZ_CP049115.1 | Pantoea stewartii |
| 153 | 3960978 | 3961247 | - | NZ_CP026377.1 | Mixta gaviniae |
| 154 | 452470 | 452784 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 155 | 244533 | 244817 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 156 | 3788564 | 3788878 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 157 | 253742 | 254056 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 158 | 3880509 | 3880823 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 159 | 3518417 | 3518701 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 160 | 552699 | 552983 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 161 | 1821242 | 1821526 | + | NZ_CP026364.1 | Proteus hauseri |
| 162 | 441334 | 441648 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 163 | 464907 | 465221 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 164 | 2144246 | 2144560 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 165 | 454154 | 454468 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 166 | 558253 | 558567 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 167 | 1310662 | 1310922 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 168 | 551946 | 552230 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 169 | 3446225 | 3446485 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 170 | 1091267 | 1091527 | + | NZ_CP029736.1 | Providencia rettgeri |
| 171 | 1203525 | 1203839 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 172 | 3107574 | 3107861 | - | NZ_CP028271.1 | Mixta intestinalis |
| 173 | 562791 | 563075 | + | NZ_CP038853.1 | Pantoea vagans |
| 174 | 2128605 | 2128874 | + | NZ_CP019706.1 | Pantoea alhagi |
| 175 | 3703246 | 3703518 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 176 | 341601 | 341876 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 177 | 380962 | 381261 | + | NZ_CP009056.1 | Frischella perrara |
| 178 | 2372675 | 2372950 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 179 | 4004959 | 4005234 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 180 | 3166447 | 3166749 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 181 | 656651 | 656968 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 182 | 717966 | 718283 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 183 | 834527 | 834772 | - | NZ_CP007445.1 | Gilliamella apicola |
| 184 | 2589583 | 2589885 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 185 | 2862473 | 2862775 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 186 | 516865 | 517152 | - | NZ_CP028926.1 | Pasteurella multocida |
| 187 | 295299 | 295589 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 188 | 2512890 | 2513216 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 189 | 3946384 | 3946698 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 190 | 112857 | 113183 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 191 | 724478 | 724780 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 192 | 2974310 | 2974612 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 193 | 2942992 | 2943294 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 194 | 760328 | 760630 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 195 | 3192875 | 3193177 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 196 | 2558963 | 2559265 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT615367.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03948.16 | 1.0 | 195 | 274.0 | same-strand | Ribosomal protein L9, C-terminal domain |
| 2 | PF01281.21 | 1.0 | 195 | 274.0 | same-strand | Ribosomal protein L9, N-terminal domain |
| 3 | PF01084.22 | 1.0 | 195 | 5.0 | same-strand | Ribosomal protein S18 |
| 4 | PF01250.19 | 1.0 | 195 | 39.0 | same-strand | Ribosomal protein S6 |
| 5 | PF04225.14 | 0.66 | 128 | 1198.0 | opposite-strand | Opacity-associated protein A LysM-like domain |
| 6 | PF08525.13 | 0.65 | 126 | 1198.0 | opposite-strand | Opacity-associated protein A N-terminal motif |
++ More..