Result : Q79FR3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | PE family protein PE13 |
| NCBI Accession ID | AL123456.3 |
| Organism | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
| Left | 1339003 |
| Right | 1339302 |
| Strand | + |
| Nucleotide Sequence | GTGTCTTTCGTGATGGCATACCCAGAGATGTTGGCGGCGGCGGCTGACACCCTGCAGAGCATCGGTGCTACCACTGTGGCTAGCAATGCCGCTGCGGCGGCCCCGACGACTGGGGTGGTGCCCCCCGCTGCCGATGAGGTGTCGGCGCTGACTGCGGCGCACTTCGCCGCACATGCGGCGATGTATCAGTCCGTGAGCGCTCGGGCTGCTGCGATTCATGACCAGTTCGTGGCCACCCTTGCCAGCAGCGCCAGCTCGTATGCGGCCACTGAAGTCGCCAATGCGGCGGCGGCCAGCTAA |
| Sequence | MSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS |
| Source of smORF | Swiss-Prot |
| Function | May play a pivotal role in the interaction between M.tuberculosis and host. Can enhance the survival within macrophages under stress conditions such as H(2)O(2), SDS and low pH. Increases the production of IL-6 and IL-1beta from macrophages, and decreases the secretion of suppressor of cytokine signaling 3 (SOCS-3). These changes probably involve the p38-ERK-NF-kappa-B signaling pathway. Also precipitates the macrophage death. {ECO:0000269|Pubmed:27147522}. |
| Pubmed ID | 9634230 19651861 21969609 27147522 |
| Domain | CDD:395748 |
| Functional Category | Others |
| Uniprot ID | Q79FR3 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 35
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1339003 | 1339302 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 2 | 3894093 | 3894389 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 3 | 2026477 | 2026776 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 4 | 2029904 | 2030203 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 5 | 4061899 | 4062198 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 6 | 2048072 | 2048371 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 7 | 1359059 | 1359358 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 8 | 3951998 | 3952294 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 9 | 2069426 | 2069725 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 10 | 2072863 | 2073162 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 11 | 4117299 | 4117598 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 12 | 2088202 | 2088501 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 13 | 1611514 | 1611813 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 14 | 48417 | 48716 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 15 | 2301665 | 2301964 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 16 | 2763655 | 2763954 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 17 | 2087975 | 2088274 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 18 | 2762240 | 2762539 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 19 | 46485 | 46784 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 20 | 4411874 | 4412173 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 21 | 4258668 | 4258967 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 22 | 2786983 | 2787282 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 23 | 4612205 | 4612504 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 24 | 2792785 | 2793084 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 25 | 5142762 | 5143061 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 26 | 1904381 | 1904641 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 27 | 5145699 | 5145998 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 28 | 2086309 | 2086596 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 29 | 642116 | 642415 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 30 | 4632685 | 4632984 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 31 | 4635181 | 4635480 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 32 | 1011454 | 1011753 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 33 | 452348 | 452647 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 34 | 1014455 | 1014754 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 35 | 54413 | 54712 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 36 | 3475604 | 3475897 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 37 | 4225809 | 4226105 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 38 | 4206857 | 4207156 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 39 | 4209881 | 4210180 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 40 | 4243892 | 4244191 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 41 | 2982182 | 2982481 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 42 | 5377215 | 5377514 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 43 | 2986054 | 2986353 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 44 | 385289 | 385588 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 45 | 5190408 | 5190707 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 46 | 382216 | 382515 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 47 | 1754515 | 1754811 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 48 | 4132265 | 4132564 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 49 | 4147153 | 4147452 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 50 | 4120624 | 4120923 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 51 | 2542528 | 2542827 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 52 | 4122936 | 4123235 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 53 | 2607839 | 2608138 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 54 | 2610296 | 2610595 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 55 | 4141980 | 4142279 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 56 | 4137896 | 4138195 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 57 | 2605388 | 2605660 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 58 | 4917333 | 4917590 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 59 | 4114436 | 4114735 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 60 | 775649 | 775945 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 61 | 105215 | 105514 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 62 | 1421610 | 1421909 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 63 | 1548652 | 1548951 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 64 | 1550491 | 1550790 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 65 | 3344193 | 3344504 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 66 | 4162570 | 4162869 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 67 | 3698054 | 3698359 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 68 | 1535916 | 1536206 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 69 | 2083354 | 2083653 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 70 | 860876 | 861148 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 71 | 1856540 | 1856839 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 72 | 416873 | 417172 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 73 | 1854622 | 1854921 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 74 | 4222926 | 4223225 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 75 | 4976360 | 4976659 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 76 | 4941405 | 4941749 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 77 | 2830361 | 2830660 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 78 | 2825240 | 2825539 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 79 | 2828525 | 2828824 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 80 | 3137451 | 3137750 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 81 | 355666 | 355983 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 82 | 2844937 | 2845236 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 83 | 906014 | 906313 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 84 | 901985 | 902284 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 85 | 75406 | 75705 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 86 | 40870 | 41169 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 87 | 917296 | 917595 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 88 | 4540965 | 4541264 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 89 | 2309516 | 2309815 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 90 | 171776 | 172075 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 91 | 898283 | 898582 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 92 | 368580 | 368879 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 93 | 1989226 | 1989501 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 94 | 1237638 | 1237937 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 95 | 1232367 | 1232666 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 96 | 5095438 | 5095737 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 97 | 1511201 | 1511500 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 98 | 1506006 | 1506305 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 99 | 3775031 | 3775330 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 100 | 5056271 | 5056573 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 101 | 908621 | 908920 | + | NZ_AP022562.1 | Mycobacterium novum |
| 102 | 2093273 | 2093569 | - | NZ_AP022562.1 | Mycobacterium novum |
| 103 | 3882663 | 3882962 | + | NZ_AP022562.1 | Mycobacterium novum |
| 104 | 4393676 | 4393975 | - | NZ_AP022562.1 | Mycobacterium novum |
| 105 | 4384804 | 4385103 | - | NZ_AP022562.1 | Mycobacterium novum |
| 106 | 3726091 | 3726390 | - | NZ_AP022562.1 | Mycobacterium novum |
| 107 | 741148 | 741447 | - | NZ_AP022562.1 | Mycobacterium novum |
| 108 | 912292 | 912591 | + | NZ_AP022562.1 | Mycobacterium novum |
| 109 | 3314789 | 3315088 | - | NZ_AP022562.1 | Mycobacterium novum |
| 110 | 2458538 | 2458837 | - | NZ_AP022562.1 | Mycobacterium novum |
| 111 | 1077070 | 1077369 | - | NC_015576.1 | Mycolicibacter sinensis |
| 112 | 2565229 | 2565528 | - | NC_015576.1 | Mycolicibacter sinensis |
| 113 | 4520629 | 4520925 | + | NC_015576.1 | Mycolicibacter sinensis |
| 114 | 2073496 | 2073795 | + | NC_015576.1 | Mycolicibacter sinensis |
| 115 | 2720199 | 2720498 | + | NC_015576.1 | Mycolicibacter sinensis |
| 116 | 1241515 | 1241814 | + | NC_015576.1 | Mycolicibacter sinensis |
| 117 | 2064619 | 2064918 | + | NC_015576.1 | Mycolicibacter sinensis |
| 118 | 1073399 | 1073698 | - | NC_015576.1 | Mycolicibacter sinensis |
| 119 | 3162454 | 3162753 | + | NC_015576.1 | Mycolicibacter sinensis |
| 120 | 4169376 | 4169675 | + | NC_015576.1 | Mycolicibacter sinensis |
| 121 | 1040468 | 1040767 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 122 | 2459541 | 2459840 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 123 | 1991533 | 1991832 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 124 | 2000507 | 2000806 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 125 | 2483741 | 2484040 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 126 | 1169145 | 1169444 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 127 | 4010786 | 4011085 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 128 | 3082408 | 3082707 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 129 | 3906570 | 3906869 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 130 | 3909066 | 3909365 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 131 | 578520 | 578819 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 132 | 2150391 | 2150690 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 133 | 581520 | 581819 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 134 | 1445884 | 1446180 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 135 | 2535588 | 2535887 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 136 | 2722913 | 2723182 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 137 | 2525081 | 2525380 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 138 | 462667 | 462966 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 139 | 2654651 | 2654950 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 140 | 1375245 | 1375544 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 141 | 788337 | 788636 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 142 | 783119 | 783418 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 143 | 3612664 | 3612963 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 144 | 4854893 | 4855195 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 145 | 3397148 | 3397447 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 146 | 5685108 | 5685407 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 147 | 3389594 | 3389893 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 148 | 5543198 | 5543497 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 149 | 6299475 | 6299774 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 150 | 3660904 | 3661200 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 151 | 6257064 | 6257363 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 152 | 46830 | 47129 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 153 | 3829163 | 3829462 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 154 | 3820259 | 3820558 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 155 | 1762737 | 1763036 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 156 | 2816945 | 2817244 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 157 | 644901 | 645200 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 158 | 653534 | 653839 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 159 | 2869770 | 2870069 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 160 | 1644521 | 1644820 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 161 | 2711978 | 2712277 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 162 | 451467 | 451766 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 163 | 2749557 | 2749856 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 164 | 1399337 | 1399636 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 165 | 2591761 | 2592060 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 166 | 460209 | 460508 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 167 | 677450 | 677749 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 168 | 684362 | 684661 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 169 | 4191154 | 4191453 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 170 | 1699142 | 1699441 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 171 | 1607912 | 1608220 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 172 | 500120 | 500419 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 173 | 1473223 | 1473522 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 174 | 1482081 | 1482380 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 175 | 1929566 | 1929865 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 176 | 2094274 | 2094573 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 177 | 572469 | 572768 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 178 | 2499264 | 2499563 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 179 | 1554215 | 1554514 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 180 | 5832271 | 5832570 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 181 | 1559597 | 1559896 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 182 | 4576112 | 4576411 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 183 | 4589964 | 4590263 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 184 | 4577981 | 4578280 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 185 | 5002974 | 5003273 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 186 | 720609 | 720908 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 187 | 3243389 | 3243688 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 188 | 705100 | 705399 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 189 | 1463623 | 1463922 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 190 | 719958 | 720257 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 191 | 3158248 | 3158547 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 192 | 3477127 | 3477417 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 193 | 782815 | 783114 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 194 | 510314 | 510613 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 195 | 784822 | 785121 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 196 | 4464551 | 4464850 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 197 | 1780858 | 1781157 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 198 | 1689694 | 1690002 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 199 | 512415 | 512714 | - | NZ_AP022607.1 | Mycobacterium branderi |
| 200 | 500205 | 500504 | + | NZ_AP022607.1 | Mycobacterium branderi |
| 201 | 493908 | 494207 | - | NZ_AP022607.1 | Mycobacterium branderi |
| 202 | 5569560 | 5569859 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 203 | 5574528 | 5574827 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 204 | 3055311 | 3055610 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 205 | 749868 | 750167 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 206 | 658314 | 658613 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 207 | 5314623 | 5314919 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 208 | 2729881 | 2730180 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 209 | 466017 | 466328 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 210 | 1065727 | 1066029 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 211 | 2206253 | 2206552 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 212 | 2956597 | 2956893 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 213 | 932064 | 932363 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 214 | 2215572 | 2215871 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 215 | 286332 | 286640 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 216 | 2648756 | 2649055 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 217 | 2663350 | 2663649 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 218 | 2666329 | 2666628 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 219 | 2230462 | 2230773 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 220 | 3388951 | 3389250 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 221 | 440877 | 441176 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 222 | 3780336 | 3780638 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 223 | 1310387 | 1310635 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 224 | 250774 | 251073 | - | NZ_CP025547.1 | Mycobacterium paragordonae |
| 225 | 68005 | 68253 | - | NC_022654.1 | Mycobacterium kansasii ATCC 12478 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP058277.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00823.21 | 1.0 | 35 | 404.5 | same-strand | PPE family |
| 2 | PF12484.10 | 1.0 | 35 | 397 | same-strand | PPE-SVP subfamily C-terminal region |
| 3 | PF06013.14 | 1.0 | 35 | 1229 | same-strand | Proteins of 100 residues with WXG |
| 4 | PF05108.15 | 0.69 | 24 | 7503 | same-strand | Type VII secretion system ESX-1, transport TM domain B |
| 5 | PF01580.20 | 0.8 | 28 | 3476.5 | same-strand | FtsK/SpoIIIE family |
| 6 | PF13459.8 | 0.69 | 24 | 1973.5 | same-strand | 4Fe-4S single cluster domain |
| 7 | PF13370.8 | 0.69 | 24 | 1973.5 | same-strand | 4Fe-4S single cluster domain of Ferredoxin I |
| 8 | PF00934.22 | 0.83 | 29 | 2725.0 | same-strand | PE family |
| 9 | PF14011.8 | 1.0 | 35 | 1049.5 | same-strand | EspG family |
| 10 | PF08817.12 | 1.0 | 35 | 2210.5 | same-strand | WXG100 protein secretion system (Wss), protein YukD |
| 11 | PF19053.2 | 0.89 | 31 | 2202 | same-strand | EccD-like transmembrane domain |
| 12 | PF04402.16 | 0.6 | 21 | 927 | opposite-strand | Protein of unknown function (DUF541) |
| 13 | PF05305.16 | 0.6 | 21 | 1406 | same-strand | Protein of unknown function (DUF732) |
++ More..