Result : Q74JV0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | AE017198.1 |
| Organism | Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) |
| Left | 905318 |
| Right | 905575 |
| Strand | - |
| Nucleotide Sequence | ATGCCACAAATTAAATCAGCAATTAAACGTGTTAAGACTAATGCTACTGCTAACAAGCGCAACGCTGCTGAATTAAGTAAATTGAGAACTGCTGTAAGAAAATTCAACGAAGCTGTTGAAAATGACGCAAAAGATGTCCTCGATTTAGAAGTTAAAGCTGCACGTGCTTTAGATAAGGCTGCTTCTAAAGGTCTTATTTCTAAGAACAAAGCTAACCGTGATAAGTCACGCTTATCTAAGAAGGCTGCTAACAAGTAA |
| Sequence | MPQIKSAIKRVKTNATANKRNAAELSKLRTAVRKFNEAVENDAKDVLDLEVKAARALDKAASKGLISKNKANRDKSRLSKKAANK |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 14983040 14602655 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q74JV0 |
| ORF Length (Amino Acid) | 85 |
++ More..
| Conservation Analysis |
No. of Species: 352
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1175057 | 1175314 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 2 | 1173314 | 1173571 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 3 | 1214534 | 1214791 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 4 | 617854 | 618111 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 5 | 823782 | 824039 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 6 | 1390274 | 1390531 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 7 | 857682 | 857933 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 8 | 685487 | 685738 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 9 | 1013923 | 1014174 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 10 | 1292690 | 1292947 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 11 | 1261345 | 1261599 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 12 | 779795 | 780046 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 13 | 1228379 | 1228633 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 14 | 1270439 | 1270693 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 15 | 1277738 | 1277992 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 16 | 826296 | 826550 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 17 | 1625188 | 1625442 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 18 | 1938494 | 1938748 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 19 | 1607426 | 1607680 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 20 | 1581374 | 1581628 | + | NZ_CP065211.1 | Enterococcus lactis |
| 21 | 2254874 | 2255128 | + | NZ_CP023011.2 | Enterococcus hirae |
| 22 | 142177 | 142431 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 23 | 721435 | 721689 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 24 | 1169939 | 1170190 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 25 | 1894866 | 1895120 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 26 | 1802897 | 1803151 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 27 | 1437190 | 1437444 | + | NZ_LR134483.1 | Listeria grayi |
| 28 | 1280466 | 1280720 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 29 | 916094 | 916342 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 30 | 1153183 | 1153437 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 31 | 757597 | 757851 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 32 | 1557608 | 1557862 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 33 | 1422128 | 1422382 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 34 | 267966 | 268220 | + | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 35 | 92791 | 93042 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 36 | 1277437 | 1277691 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 37 | 925402 | 925653 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 38 | 633032 | 633304 | - | NZ_CP046996.1 | Dehalobacter restrictus |
| 39 | 1115989 | 1116243 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 40 | 1465963 | 1466214 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 41 | 143921 | 144184 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 42 | 1998337 | 1998591 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 43 | 1426491 | 1426745 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 44 | 1790410 | 1790664 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 45 | 364702 | 364956 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 46 | 344354 | 344608 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 47 | 2548709 | 2548963 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 48 | 1594864 | 1595127 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 49 | 2509961 | 2510224 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 50 | 1870638 | 1870892 | + | NZ_CP046037.1 | Latilactobacillus sakei |
| 51 | 2079575 | 2079829 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 52 | 729806 | 730057 | - | NZ_CP029476.1 | Lactobacillus apis |
| 53 | 828958 | 829212 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 54 | 2865119 | 2865373 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 55 | 264755 | 265015 | - | NZ_CP039712.1 | Vagococcus zengguangii |
| 56 | 703032 | 703286 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 57 | 1548001 | 1548255 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 58 | 1513917 | 1514171 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 59 | 672534 | 672788 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 60 | 1491010 | 1491264 | + | NZ_LT906444.1 | Listeria welshimeri |
| 61 | 673411 | 673665 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 62 | 1582498 | 1582752 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 63 | 682481 | 682735 | + | NZ_CP061835.1 | Weissella viridescens |
| 64 | 725174 | 725428 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 65 | 612021 | 612269 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 66 | 1596895 | 1597143 | + | NZ_CP014164.1 | Aerococcus viridans |
| 67 | 557661 | 557912 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 68 | 1022077 | 1022331 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 69 | 784388 | 784648 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 70 | 1385448 | 1385702 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 71 | 687389 | 687643 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 72 | 885677 | 885931 | + | NZ_CP027563.1 | Weissella confusa |
| 73 | 1447468 | 1447722 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 74 | 1061386 | 1061634 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 75 | 2016028 | 2016282 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 76 | 839634 | 839888 | - | NZ_CP017326.1 | Weissella soli |
| 77 | 1317771 | 1318025 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 78 | 2055295 | 2055549 | - | NZ_CP023643.1 | Brochothrix thermosphacta |
| 79 | 2432230 | 2432484 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 80 | 1357429 | 1357677 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 81 | 2193379 | 2193627 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 82 | 1160108 | 1160362 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 83 | 983759 | 984022 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 84 | 101995 | 102249 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 85 | 1473930 | 1474187 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 86 | 3346896 | 3347162 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 87 | 1933281 | 1933535 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 88 | 1662079 | 1662342 | - | NZ_LS483476.1 | Lederbergia lentus |
| 89 | 1127323 | 1127577 | + | NZ_CP017194.1 | Lactococcus carnosus |
| 90 | 1150514 | 1150768 | + | NZ_CP012047.1 | Tetragenococcus halophilus |
| 91 | 4203774 | 4204046 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 92 | 847305 | 847553 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 93 | 1603950 | 1604198 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 94 | 1494139 | 1494387 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 95 | 1332702 | 1332953 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 96 | 2865308 | 2865580 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 97 | 3418501 | 3418767 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 98 | 3692896 | 3693168 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 99 | 1269312 | 1269560 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 100 | 1561092 | 1561340 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 101 | 909192 | 909449 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 102 | 2486200 | 2486472 | + | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 103 | 4575886 | 4576158 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 104 | 3070013 | 3070285 | + | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 105 | 1158796 | 1159050 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 106 | 1324729 | 1324989 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 107 | 4976568 | 4976831 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 108 | 2939750 | 2940016 | - | NZ_CP021434.1 | Tumebacillus avium |
| 109 | 2035281 | 2035547 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 110 | 2578326 | 2578580 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 111 | 372721 | 372975 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 112 | 701649 | 701903 | - | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 113 | 2949305 | 2949577 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 114 | 2160845 | 2161099 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 115 | 1849526 | 1849759 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 116 | 2298769 | 2299029 | + | NZ_CP012024.1 | Bacillus smithii |
| 117 | 434321 | 434575 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 118 | 1827888 | 1828157 | + | NZ_CP034118.1 | Staphylospora marina |
| 119 | 2560201 | 2560467 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 120 | 2603291 | 2603563 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 121 | 1085717 | 1085983 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 122 | 1733744 | 1734013 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 123 | 531603 | 531857 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 124 | 3331867 | 3332118 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 125 | 2586172 | 2586438 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 126 | 5027015 | 5027254 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 127 | 2548780 | 2549028 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 128 | 5154317 | 5154589 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 129 | 2545967 | 2546233 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 130 | 1423793 | 1424068 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 131 | 5034069 | 5034308 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 132 | 90688 | 90954 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 133 | 1466640 | 1466891 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 134 | 1350711 | 1350956 | - | NZ_CP011366.1 | Salinicoccus halodurans |
| 135 | 3827086 | 3827352 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 136 | 1494849 | 1495097 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 137 | 3482276 | 3482542 | + | NZ_CP053989.1 | Niallia circulans |
| 138 | 789737 | 790012 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 139 | 573632 | 573922 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 140 | 766971 | 767243 | - | NZ_CP033433.1 | Cohnella candidum |
| 141 | 5222055 | 5222327 | + | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 142 | 1654202 | 1654435 | + | NZ_CP070872.1 | Lactococcus taiwanensis |
| 143 | 4717399 | 4717671 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 144 | 3091855 | 3092103 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 145 | 1562212 | 1562460 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 146 | 806609 | 806845 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 147 | 125651 | 125908 | + | NZ_CP053988.1 | Abiotrophia defectiva |
| 148 | 2904341 | 2904607 | + | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 149 | 2621077 | 2621343 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 150 | 2149612 | 2149878 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 151 | 3429591 | 3429857 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 152 | 1211730 | 1211978 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 153 | 1205172 | 1205435 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 154 | 6751188 | 6751460 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 155 | 4035097 | 4035363 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 156 | 678426 | 678665 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 157 | 3157581 | 3157841 | + | NZ_CP022685.1 | Streptomyces formicae |
| 158 | 1811299 | 1811532 | + | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 159 | 902348 | 902620 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 160 | 4115128 | 4115403 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 161 | 3871483 | 3871758 | + | NZ_CP026363.1 | Brevibacillus agri |
| 162 | 1937645 | 1937905 | - | NZ_LR134363.1 | Actinomyces slackii |
| 163 | 520231 | 520491 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 164 | 1546791 | 1547051 | + | NZ_CP066060.1 | Actinomyces oris |
| 165 | 2588742 | 2589002 | + | NZ_CP066049.1 | Actinomyces naeslundii |
| 166 | 4185380 | 4185652 | + | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 167 | 747599 | 747868 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 168 | 1332656 | 1332916 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 169 | 1351197 | 1351457 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 170 | 979041 | 979307 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 171 | 1974129 | 1974395 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 172 | 3141566 | 3141832 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 173 | 2532216 | 2532485 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 174 | 1733055 | 1733324 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 175 | 1404000 | 1404269 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 176 | 3405030 | 3405299 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 177 | 6147325 | 6147567 | + | NZ_AP017900.1 | Nocardia seriolae |
| 178 | 112396 | 112662 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 179 | 1084212 | 1084478 | - | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 180 | 8217763 | 8218029 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 181 | 2363709 | 2363975 | + | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 182 | 1773073 | 1773339 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 183 | 3427023 | 3427283 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 184 | 3870304 | 3870576 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 185 | 1007942 | 1008205 | - | NZ_CP027226.1 | Fastidiosipila sanguinis |
| 186 | 3058361 | 3058627 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 187 | 2121785 | 2122051 | + | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 188 | 3127758 | 3128024 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 189 | 1074693 | 1074959 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 190 | 1550690 | 1550950 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 191 | 4311547 | 4311819 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 192 | 6741894 | 6742154 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 193 | 3383131 | 3383397 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 194 | 1862525 | 1862785 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 195 | 4630322 | 4630594 | + | NZ_AP019400.1 | Cohnella abietis |
| 196 | 1985983 | 1986255 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 197 | 2547825 | 2548097 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 198 | 1449075 | 1449341 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 199 | 5305178 | 5305450 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 200 | 5922086 | 5922352 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 201 | 1342827 | 1343096 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 202 | 1506293 | 1506532 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 203 | 2548089 | 2548352 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 204 | 6577073 | 6577339 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 205 | 9219878 | 9220138 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 206 | 3444794 | 3445060 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 207 | 1544795 | 1545055 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 208 | 5013308 | 5013526 | + | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 209 | 1141946 | 1142206 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 210 | 1734855 | 1735127 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 211 | 1192876 | 1193136 | + | NZ_LR134357.1 | Actinomyces israelii |
| 212 | 466916 | 467188 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 213 | 1855223 | 1855495 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 214 | 5502062 | 5502328 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 215 | 1983378 | 1983638 | + | NZ_CP039292.1 | Actinomyces procaprae |
| 216 | 317143 | 317403 | - | NZ_CP060716.1 | Leucobacter denitrificans |
| 217 | 2701178 | 2701444 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 218 | 1505972 | 1506232 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 219 | 3520724 | 3520984 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 220 | 195153 | 195413 | - | NZ_LR134350.1 | Actinomyces howellii |
| 221 | 1807504 | 1807770 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 222 | 2298586 | 2298846 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 223 | 1601217 | 1601477 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 224 | 1963583 | 1963849 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 225 | 6584386 | 6584652 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 226 | 3414079 | 3414339 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 227 | 3218291 | 3218551 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 228 | 2585542 | 2585802 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 229 | 2402608 | 2402874 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 230 | 1838326 | 1838592 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 231 | 4332809 | 4333075 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 232 | 3675085 | 3675351 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 233 | 2337478 | 2337750 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 234 | 1677613 | 1677873 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 235 | 2557380 | 2557640 | + | NZ_CP013979.1 | Agromyces aureus |
| 236 | 6159355 | 6159615 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 237 | 110877 | 111137 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 238 | 2149050 | 2149316 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 239 | 1568714 | 1568953 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 240 | 3066937 | 3067203 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 241 | 1314639 | 1314905 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 242 | 96717 | 96977 | + | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 243 | 1991014 | 1991274 | - | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 244 | 2061605 | 2061865 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 245 | 5778274 | 5778543 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 246 | 5095241 | 5095501 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 247 | 2740693 | 2740959 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 248 | 2378823 | 2379089 | + | NZ_CP029043.1 | Streptomyces nigra |
| 249 | 3447627 | 3447890 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 250 | 2214992 | 2215237 | - | NZ_LT996886.1 | Tessaracoccus timonensis |
| 251 | 3365026 | 3365265 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 252 | 3737761 | 3738021 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 253 | 1495093 | 1495353 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 254 | 5799296 | 5799556 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 255 | 3616746 | 3617006 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 256 | 5556628 | 5556888 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 257 | 2563983 | 2564243 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 258 | 5825089 | 5825355 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 259 | 2838508 | 2838768 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 260 | 2138596 | 2138856 | + | NZ_CP049934.1 | Leucobacter insecticola |
| 261 | 7803334 | 7803594 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 262 | 5885446 | 5885712 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 263 | 5575305 | 5575577 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 264 | 2890825 | 2891097 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 265 | 6321515 | 6321775 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 266 | 4026079 | 4026339 | + | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 267 | 3705832 | 3706071 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 268 | 1111464 | 1111724 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 269 | 1693211 | 1693471 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 270 | 1508112 | 1508318 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 271 | 1712908 | 1713168 | + | NZ_LR134442.1 | Propionibacterium australiense |
| 272 | 1605709 | 1605936 | - | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 273 | 1282629 | 1282892 | - | NZ_LR134365.1 | Cardiobacterium hominis |
| 274 | 1573566 | 1573826 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 275 | 1714060 | 1714320 | - | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 276 | 3822253 | 3822513 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 277 | 911752 | 912015 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 278 | 1122779 | 1123045 | - | NZ_CP012117.1 | Dermabacter vaginalis |
| 279 | 3365935 | 3366195 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 280 | 3764091 | 3764363 | + | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 281 | 2587395 | 2587661 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 282 | 6291016 | 6291261 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 283 | 1620940 | 1621146 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 284 | 1756376 | 1756582 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 285 | 2774781 | 2775041 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 286 | 2138370 | 2138594 | - | NZ_CP023465.1 | Lysobacter capsici |
| 287 | 2981816 | 2982076 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 288 | 5714947 | 5715213 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 289 | 2844367 | 2844639 | - | NZ_CP034437.1 | Paenibacillus albus |
| 290 | 1510221 | 1510427 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 291 | 1678056 | 1678280 | + | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 292 | 3563824 | 3564084 | + | NZ_CP009896.1 | Pimelobacter simplex |
| 293 | 43606 | 43866 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 294 | 659808 | 660074 | + | NZ_LN849456.1 | Devriesea agamarum |
| 295 | 2593065 | 2593331 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 296 | 3943303 | 3943509 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 297 | 3452733 | 3452993 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 298 | 5050239 | 5050505 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 299 | 3863651 | 3863911 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 300 | 4986353 | 4986619 | - | NC_020990.1 | Streptomyces albidoflavus |
| 301 | 5286196 | 5286462 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 302 | 3861730 | 3861969 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 303 | 1217401 | 1217661 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 304 | 3618862 | 3619086 | + | NZ_CP011131.1 | Lysobacter gummosus |
| 305 | 5105086 | 5105352 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 306 | 2922510 | 2922755 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 307 | 4069231 | 4069491 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 308 | 2995599 | 2995844 | + | NZ_CP023691.1 | Streptomyces platensis |
| 309 | 2511797 | 2512042 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 310 | 1521903 | 1522169 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 311 | 2227038 | 2227262 | - | NZ_CP011129.1 | Lysobacter antibioticus |
| 312 | 1038588 | 1038848 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 313 | 2335015 | 2335281 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 314 | 4679504 | 4679764 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 315 | 985779 | 986006 | - | NZ_CP046570.1 | Xanthomonas albilineans |
| 316 | 3403045 | 3403311 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 317 | 1504418 | 1504687 | + | NZ_CP071517.1 | Lysobacter arenosi |
| 318 | 2812407 | 2812616 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 319 | 1418135 | 1418395 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 320 | 2504602 | 2504862 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 321 | 736374 | 736634 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 322 | 1480216 | 1480440 | - | NZ_CP029843.1 | Lysobacter maris |
| 323 | 2406169 | 2406435 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 324 | 4966585 | 4966851 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 325 | 1403864 | 1404091 | - | NZ_CP046603.1 | Lysobacter soli |
| 326 | 3846328 | 3846591 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 327 | 6724374 | 6724634 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 328 | 5303151 | 5303417 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 329 | 687235 | 687507 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 330 | 6258077 | 6258343 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 331 | 2107074 | 2107340 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 332 | 1468541 | 1468807 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 333 | 4830002 | 4830268 | - | NZ_CP065253.1 | Streptomyces clavuligerus |
| 334 | 4182375 | 4182635 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 335 | 1984678 | 1984947 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 336 | 1814169 | 1814435 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 337 | 2051815 | 2052081 | + | NZ_CP031194.1 | Streptomyces paludis |
| 338 | 3028794 | 3029054 | - | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 339 | 4987821 | 4988087 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 340 | 2728512 | 2728784 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 341 | 5793472 | 5793738 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 342 | 2481518 | 2481778 | + | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 343 | 2204081 | 2204347 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 344 | 5809274 | 5809540 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 345 | 2574808 | 2575074 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 346 | 2375749 | 2376015 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 347 | 3321558 | 3321821 | - | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 348 | 1557903 | 1558163 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 349 | 1334732 | 1334998 | + | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 350 | 2360690 | 2360959 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 351 | 1105809 | 1106072 | + | NC_014363.1 | Olsenella uli DSM 7084 |
| 352 | 1734569 | 1734829 | + | NZ_CP026949.1 | Mycetocola zhujimingii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP059276.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00009.29 | 0.63 | 221 | 2942.5 | opposite-strand | Elongation factor Tu GTP binding domain |
| 2 | PF03144.27 | 0.62 | 219 | 2886.0 | opposite-strand | Elongation factor Tu domain 2 |
| 3 | PF06144.15 | 0.85 | 300 | 109.0 | opposite-strand | DNA polymerase III, delta subunit |
| 4 | PF03772.18 | 0.76 | 267 | 1371 | opposite-strand | Competence protein |
| 5 | PF12836.9 | 0.63 | 221 | 3953 | opposite-strand | Helix-hairpin-helix motif |
++ More..