Result : Q72QX8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sec-independent protein translocase protein TatA |
| NCBI Accession ID | |
| Organism | Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MFAPLAVFGSLGWTEILLILFIALLLFGGKRLPSLAKDLGDGIRSFRKSLTGESDDSSQQISQEQERSVPKEETKTSKSKKSKSA |
| Source of smORF | Swiss-Prot |
| Function | Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. {ECO:0000255|HAMAP-Rule:MF_00236}. |
| Pubmed ID | 15028702 |
| Domain | CDD:294511 |
| Functional Category | Others |
| Uniprot ID | Q72QX8 |
| ORF Length (Amino Acid) | 85 |
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| Conservation Analysis |
No. of Species: 7
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 395639 | 395896 | + | NZ_CP020414.2 | Leptospira interrogans serovar Copenhageni |
| 2 | 2172609 | 2172866 | - | NZ_CP040840.1 | Leptospira weilii |
| 3 | 2680688 | 2680945 | - | NZ_CP030142.1 | Leptospira mayottensis |
| 4 | 113786 | 114043 | - | NZ_CP033614.1 | Leptospira kmetyi |
| 5 | 1768376 | 1768630 | - | NZ_CP015217.1 | Leptospira tipperaryensis |
| 6 | 1893859 | 1894116 | - | NZ_CP026671.1 | Leptospira borgpetersenii serovar Ceylonica |
| 7 | 5899593 | 5899832 | + | NC_010571.1 | Opitutus terrae PB90-1 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP020414.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00441.26 | 0.86 | 6 | 3795.5 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 2 | PF02771.18 | 0.86 | 6 | 3795.5 | opposite-strand | Acyl-CoA dehydrogenase, N-terminal domain |
| 3 | PF02770.21 | 0.86 | 6 | 3795.5 | opposite-strand | Acyl-CoA dehydrogenase, middle domain |
| 4 | PF08028.13 | 0.86 | 6 | 3795.5 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
| 5 | PF00027.31 | 0.86 | 6 | 1620.0 | opposite-strand | Cyclic nucleotide-binding domain |
| 6 | PF00085.22 | 0.86 | 6 | 1282.0 | opposite-strand | Thioredoxin |
| 7 | PF13098.8 | 0.86 | 6 | 1282.0 | opposite-strand | Thioredoxin-like domain |
| 8 | PF00902.20 | 0.86 | 6 | 15.5 | same-strand | Sec-independent protein translocase protein (TatC) |
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