Result : A8Z661
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S15 |
| NCBI Accession ID | CP000770.2 |
| Organism | Sulcia muelleri (strain GWSS) |
| Left | 210045 |
| Right | 210281 |
| Strand | - |
| Nucleotide Sequence | ATGTATTTAAATTCAAATAAAAAAAAATTAATAATTAAAAATTATGGATTATCAGAATATGATACTGGTAACTGTATAGTACAAATAGCTTTATTAACATTTAAAATAAAAAATATAACAAATCATCTTAAATATAATAAAAAGGATTTTAATACAGAAAGATCTCTACAAATTTTAGTTTCTAAAAGAAAAAAGTTACTTAAATATATAGAAAAAAAAAATAATACTCAATTATGA |
| Sequence | MYLNSNKKKLIIKNYGLSEYDTGNCIVQIALLTFKIKNITNHLKYNKKDFNTERSLQILVSKRKKLLKYIEKKNNTQL |
| Source of smORF | Swiss-Prot |
| Function | One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. {ECO:0000255|HAMAP-Rule:MF_01343}.; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. {ECO:0000255|HAMAP-Rule:MF_01343}. |
| Pubmed ID | 18048332 |
| Domain | CDD:412325 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A8Z661 |
| ORF Length (Amino Acid) | 78 |
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| Conservation Analysis |
No. of Species: 91
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 104596 | 104865 | - | NC_016621.1 | Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu |
| 2 | 106167 | 106436 | - | NZ_CP029844.1 | Blattabacterium clevelandi |
| 3 | 3693537 | 3693806 | - | NZ_LT608328.1 | Petrimonas mucosa |
| 4 | 2913719 | 2913988 | + | NZ_CP033924.1 | Chryseobacterium lactis |
| 5 | 4554302 | 4554571 | + | NZ_CP033926.1 | Chryseobacterium joostei |
| 6 | 2808523 | 2808792 | + | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 7 | 1623588 | 1623857 | + | NZ_CP034161.1 | Epilithonimonas vandammei |
| 8 | 1458526 | 1458795 | - | NZ_CP053698.1 | Empedobacter stercoris |
| 9 | 395879 | 396148 | - | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 10 | 3090522 | 3090791 | - | NZ_CP033914.1 | Chryseobacterium shandongense |
| 11 | 418715 | 418990 | + | NZ_CP038254.1 | Legionella israelensis |
| 12 | 1289158 | 1289427 | + | NZ_CP034159.1 | Kaistella carnis |
| 13 | 1860184 | 1860453 | + | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 14 | 3909647 | 3909916 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 15 | 1558040 | 1558309 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 16 | 559000 | 559269 | - | NZ_CP063145.1 | Cruoricaptor ignavus |
| 17 | 1444829 | 1445098 | - | NZ_LR215974.1 | Chryseobacterium taihuense |
| 18 | 49906 | 50175 | - | NZ_LR134441.1 | Kaistella antarctica |
| 19 | 3053899 | 3054168 | - | NZ_LR134503.1 | Kaistella jeonii |
| 20 | 1323827 | 1324096 | - | NZ_CP034930.1 | Apibacter raozihei |
| 21 | 2159361 | 2159630 | - | NZ_CP019342.1 | Nonlabens tegetincola |
| 22 | 1133738 | 1134007 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 23 | 5291531 | 5291800 | + | NZ_LR134289.1 | Chryseobacterium gleum |
| 24 | 5272073 | 5272342 | - | NZ_CP033920.1 | Chryseobacterium carnipullorum |
| 25 | 1903790 | 1904059 | - | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 26 | 444827 | 445096 | - | NC_008571.1 | Gramella forsetii KT0803 |
| 27 | 2478593 | 2478862 | - | NZ_CP016359.1 | Gramella flava JLT2011 |
| 28 | 1642091 | 1642360 | + | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 29 | 528366 | 528635 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 30 | 726699 | 726968 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 31 | 847604 | 847870 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 32 | 1647336 | 1647605 | + | NZ_CP025791.1 | Flavivirga eckloniae |
| 33 | 2254030 | 2254299 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 34 | 1429034 | 1429303 | - | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 35 | 631146 | 631415 | - | NZ_CP015199.1 | Chryseobacterium glaciei |
| 36 | 1351519 | 1351788 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 37 | 3193102 | 3193371 | + | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 38 | 1682349 | 1682618 | + | NZ_CP013210.1 | Empedobacter brevis |
| 39 | 144832 | 145101 | + | NZ_CP034549.1 | Nonlabens ponticola |
| 40 | 1426583 | 1426852 | - | NZ_CP032050.1 | Euzebyella marina |
| 41 | 2157023 | 2157292 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 42 | 3020911 | 3021180 | + | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 43 | 3406884 | 3407153 | + | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 44 | 2243867 | 2244136 | - | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 45 | 536438 | 536707 | - | NZ_CP022386.1 | Capnocytophaga gingivalis |
| 46 | 2532783 | 2533052 | + | NZ_CP020822.1 | Tenacibaculum maritimum |
| 47 | 289959 | 290228 | + | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 48 | 1805552 | 1805821 | - | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 49 | 344158 | 344427 | + | NZ_CP028811.1 | Flavobacterium magnum |
| 50 | 222185 | 222454 | + | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 51 | 930165 | 930434 | + | NC_015844.1 | Zobellia galactanivorans |
| 52 | 480659 | 480928 | + | NC_014935.1 | Nitratifractor salsuginis DSM 16511 |
| 53 | 1797924 | 1798193 | - | NZ_CP029186.1 | Flavobacterium album |
| 54 | 2048394 | 2048663 | - | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 55 | 3068970 | 3069242 | - | NZ_CP048113.1 | Chitinophaga agri |
| 56 | 2589768 | 2590037 | - | NZ_CP030104.1 | Flagellimonas maritima |
| 57 | 8180916 | 8181188 | - | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 58 | 2938002 | 2938271 | + | NZ_CP019352.1 | Lacinutrix venerupis |
| 59 | 2563446 | 2563715 | - | NZ_CP022379.1 | Capnocytophaga sputigena |
| 60 | 2716356 | 2716625 | + | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 61 | 2144086 | 2144355 | - | NZ_CP028136.1 | Gramella fulva |
| 62 | 3501637 | 3501906 | - | NZ_CP037755.1 | Pseudocnuella soli |
| 63 | 2560687 | 2560956 | + | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 64 | 2002994 | 2003263 | - | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 65 | 662536 | 662805 | + | NZ_AP022826.1 | Nitrosophilus labii |
| 66 | 696987 | 697259 | - | NZ_AP023212.1 | Hydrogenimonas urashimensis |
| 67 | 4129190 | 4129459 | + | NZ_LT899436.1 | Tenacibaculum jejuense |
| 68 | 1651135 | 1651404 | - | NC_015318.1 | Hippea maritima DSM 10411 |
| 69 | 674660 | 674929 | - | NZ_CP053348.1 | Winogradskyella forsetii |
| 70 | 3612720 | 3612989 | + | NZ_CP053351.1 | Winogradskyella schleiferi |
| 71 | 719423 | 719692 | + | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 72 | 448821 | 449090 | + | NZ_CP011390.1 | Flavisolibacter tropicus |
| 73 | 5078273 | 5078545 | - | NZ_CP023777.1 | Chitinophaga caeni |
| 74 | 1154686 | 1154955 | - | NZ_AP022847.1 | Nitrosophilus alvini |
| 75 | 1098450 | 1098725 | - | NZ_CP024727.1 | Prevotella intermedia |
| 76 | 1741686 | 1741955 | - | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 77 | 538910 | 539173 | + | NC_020510.1 | Blattabacterium cuenoti BPAA |
| 78 | 1015150 | 1015419 | - | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 79 | 398904 | 399173 | - | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 80 | 2177046 | 2177309 | - | NZ_CP013019.1 | Clostridium pasteurianum |
| 81 | 1194817 | 1195080 | + | NZ_CP030775.1 | Clostridium butyricum |
| 82 | 1495919 | 1496176 | + | NZ_CP024699.1 | Fusobacterium pseudoperiodonticum |
| 83 | 169278 | 169535 | - | NZ_LN831027.1 | Fusobacterium nucleatum subsp. polymorphum |
| 84 | 3111228 | 3111497 | - | NZ_CP022957.1 | Maribacter cobaltidurans |
| 85 | 43599 | 43856 | + | NZ_CP068114.1 | Fusobacterium canifelinum |
| 86 | 610205 | 610471 | + | NZ_CP016379.1 | Anoxybacter fermentans |
| 87 | 3488614 | 3488871 | - | NZ_CP028105.1 | Fusobacterium ulcerans |
| 88 | 3830380 | 3830646 | - | NZ_CP019646.1 | Limihaloglobus sulfuriphilus |
| 89 | 3224179 | 3224436 | - | NZ_CP028103.1 | Fusobacterium varium ATCC 27725 |
| 90 | 2695898 | 2696155 | - | NZ_CP028102.1 | Fusobacterium mortiferum ATCC 9817 |
| 91 | 531220 | 531480 | - | NC_000908.2 | Mycoplasma genitalium G37 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_016621.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01138.23 | 0.82 | 75 | 205 | same-strand | 3' exoribonuclease family, domain 1 |
| 2 | PF00575.25 | 0.84 | 76 | 205 | same-strand | S1 RNA binding domain |
| 3 | PF03725.17 | 0.82 | 75 | 205 | same-strand | 3' exoribonuclease family, domain 2 |
| 4 | PF00013.31 | 0.81 | 74 | 205.0 | same-strand | KH domain |
| 5 | PF03726.16 | 0.82 | 75 | 205 | same-strand | Polyribonucleotide nucleotidyltransferase, RNA binding domain |
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