Result : Q72CS4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L32 |
| NCBI Accession ID | AE017285.1 |
| Organism | Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) |
| Left | 1300271 |
| Right | 1300450 |
| Strand | - |
| Nucleotide Sequence | ATGGCCGTTCAGCAGAACAAGAAGTCCCGTTCCCGCAAGGGGATGCGTCGCTCCCACGACCGCGTGGCCGTGCCCGCCGTCGTGTACTGCGCCTGCGGCGAGCCCACCGCTCCCCACCGTGCCTGCCCCAGCTGCGGTACCTACAAGGGCCGTCAGGTGACCAAGCAGGACAATGAATAG |
| Sequence | MAVQQNKKSRSRKGMRRSHDRVAVPAVVYCACGEPTAPHRACPSCGTYKGRQVTKQDNE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 15077118 |
| Domain | CDD:415589 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q72CS4 |
| ORF Length (Amino Acid) | 59 |
++ More..
| Conservation Analysis |
No. of Species: 405
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1303788 | 1303967 | - | NC_017310.1 | Desulfovibrio vulgaris RCH1 |
| 2 | 2448286 | 2448468 | + | NC_007519.1 | Desulfovibrio alaskensis G20 |
| 3 | 889113 | 889295 | - | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 4 | 203868 | 204065 | - | NC_020127.1 | Lawsonia intracellularis N343 |
| 5 | 3629802 | 3629984 | + | NZ_CP045504.1 | Desulfovibrio sulfodismutans DSM 3696 |
| 6 | 1816550 | 1816729 | + | NZ_CP046400.1 | Pseudodesulfovibrio cashew |
| 7 | 790989 | 791171 | + | NZ_CP045508.1 | Desulfolutivibrio sulfoxidireducens |
| 8 | 616419 | 616601 | - | NZ_CP026538.1 | Desulfovibrio carbinolicus |
| 9 | 4516654 | 4516836 | + | NC_012796.1 | Desulfovibrio magneticus RS-1 |
| 10 | 2763060 | 2763239 | + | NZ_LT907975.1 | Pseudodesulfovibrio profundus |
| 11 | 2614224 | 2614418 | - | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 12 | 1475489 | 1475668 | + | NZ_CP039543.1 | Desulfovibrio marinus |
| 13 | 1845472 | 1845651 | - | NC_016803.1 | Pseudodesulfovibrio mercurii |
| 14 | 3034510 | 3034689 | - | NC_014844.1 | Pseudodesulfovibrio aespoeensis Aspo-2 |
| 15 | 720351 | 720530 | - | NC_012881.1 | Maridesulfovibrio salexigens DSM 2638 |
| 16 | 2371068 | 2371250 | + | NZ_AP017378.1 | Desulfovibrio ferrophilus |
| 17 | 1643614 | 1643802 | + | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
| 18 | 92695 | 92874 | - | NC_013173.1 | Desulfomicrobium baculatum DSM 4028 |
| 19 | 1397863 | 1398042 | + | NZ_CP014230.1 | Desulfomicrobium orale DSM 12838 |
| 20 | 2175466 | 2175648 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 21 | 2873184 | 2873366 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 22 | 1518673 | 1518855 | - | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 23 | 1751670 | 1751852 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 24 | 1775742 | 1775924 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 25 | 2065775 | 2065960 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 26 | 3597790 | 3597972 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 27 | 1275152 | 1275334 | + | NZ_AP023213.1 | Citrifermentans bremense |
| 28 | 1798827 | 1799009 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 29 | 2190921 | 2191100 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 30 | 402507 | 402686 | + | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 31 | 1670019 | 1670201 | + | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 32 | 2641561 | 2641740 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 33 | 1873945 | 1874130 | + | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 34 | 140183 | 140389 | + | NZ_CP024422.1 | Paracoccus yeei |
| 35 | 5370848 | 5371042 | - | NZ_CP036273.1 | Urbifossiella limnaea |
| 36 | 1804192 | 1804368 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 37 | 2774579 | 2774764 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 38 | 1661322 | 1661507 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 39 | 377904 | 378077 | + | NC_011374.1 | Ureaplasma urealyticum serovar 10 str. ATCC 33699 |
| 40 | 378939 | 379112 | + | NC_010503.1 | Ureaplasma parvum serovar 3 str. ATCC 27815 |
| 41 | 1982093 | 1982272 | - | NZ_CP059569.1 | Kingella oralis |
| 42 | 1040970 | 1041143 | + | NZ_CP033433.1 | Cohnella candidum |
| 43 | 2016131 | 2016310 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 44 | 583673 | 583852 | - | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 45 | 2434992 | 2435171 | - | NZ_CP059571.1 | Neisseria bacilliformis |
| 46 | 2258489 | 2258668 | + | NZ_CP031700.1 | Neisseria zalophi |
| 47 | 1107130 | 1107336 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 48 | 3952769 | 3952957 | - | NC_018645.1 | Desulfobacula toluolica Tol2 |
| 49 | 380717 | 380896 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 50 | 1360884 | 1361090 | + | NZ_CP045072.1 | Paracoccus kondratievae |
| 51 | 4811308 | 4811490 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 52 | 2387656 | 2387835 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 53 | 1693545 | 1693721 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 54 | 1692598 | 1692777 | + | NZ_LR134533.1 | Neisseria weaveri |
| 55 | 986833 | 987012 | + | NZ_LT906434.1 | Neisseria zoodegmatis |
| 56 | 2065919 | 2066125 | + | NZ_LN832559.1 | Paracoccus aminovorans |
| 57 | 1930048 | 1930227 | + | NZ_CP031252.1 | Neisseria elongata |
| 58 | 1393664 | 1393840 | + | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 59 | 265985 | 266191 | + | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 60 | 10899374 | 10899562 | + | NZ_CP012333.1 | Labilithrix luteola |
| 61 | 2616221 | 2616397 | + | NZ_CP060414.1 | Neisseria musculi |
| 62 | 403411 | 403590 | - | NZ_CP038018.1 | Eikenella exigua |
| 63 | 1601762 | 1601941 | - | NZ_CP053015.1 | Sphingomonas lacunae |
| 64 | 2297876 | 2298058 | + | NZ_AP017900.1 | Nocardia seriolae |
| 65 | 4476197 | 4476394 | + | NZ_CP011125.1 | Sandaracinus amylolyticus |
| 66 | 1827585 | 1827764 | - | NZ_LS483369.1 | Neisseria cinerea |
| 67 | 2190660 | 2190839 | - | NZ_CP039887.1 | Neisseria subflava |
| 68 | 2226894 | 2227073 | - | NZ_CP039886.1 | Neisseria flavescens |
| 69 | 2445671 | 2445877 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 70 | 4964500 | 4964682 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 71 | 1245496 | 1245675 | - | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 72 | 2152249 | 2152428 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 73 | 1298643 | 1298822 | - | NZ_CP031699.1 | Neisseria animalis |
| 74 | 321055 | 321234 | + | NZ_LR134516.1 | Neisseria animaloris |
| 75 | 2386791 | 2386970 | - | NZ_CP059565.1 | Neisseria wadsworthii |
| 76 | 1335040 | 1335219 | + | NZ_LR134313.1 | Neisseria canis |
| 77 | 77962 | 78141 | - | NZ_CP031253.1 | Neisseria lactamica |
| 78 | 340509 | 340688 | + | NZ_CP059564.1 | Alysiella filiformis |
| 79 | 1514336 | 1514515 | - | NZ_LT906482.1 | Eikenella corrodens |
| 80 | 666434 | 666613 | + | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 81 | 1959631 | 1959828 | - | NC_017079.1 | Caldilinea aerophila DSM 14535 = NBRC 104270 |
| 82 | 4111825 | 4112007 | + | NZ_AP021875.1 | Desulfosarcina widdelii |
| 83 | 1451702 | 1451881 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 84 | 1078830 | 1079036 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 85 | 3717708 | 3717887 | + | NZ_AP017655.1 | Sphingobium cloacae |
| 86 | 2948786 | 2948965 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 87 | 2100356 | 2100535 | + | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 88 | 1588058 | 1588231 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 89 | 1799418 | 1799597 | + | NZ_CP072524.1 | Neisseria sicca |
| 90 | 1257933 | 1258112 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 91 | 853280 | 853459 | - | NZ_CP022278.1 | Neisseria chenwenguii |
| 92 | 89918 | 90097 | + | NZ_CP042306.1 | Sphingomonas panacisoli |
| 93 | 2503337 | 2503513 | + | NZ_CP020083.1 | Blastomonas fulva |
| 94 | 895185 | 895364 | - | NZ_CP022889.1 | Tsuneonella mangrovi |
| 95 | 2515516 | 2515695 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 96 | 82873 | 83049 | - | NZ_CP016033.1 | Erythrobacter neustonensis |
| 97 | 1836028 | 1836207 | + | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 98 | 1061168 | 1061371 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 99 | 875448 | 875651 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 100 | 2298754 | 2298957 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 101 | 3218329 | 3218508 | + | NC_014006.1 | Sphingobium japonicum UT26S |
| 102 | 1741032 | 1741214 | + | NZ_CP014525.1 | Haematospirillum jordaniae |
| 103 | 3867212 | 3867394 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 104 | 1876336 | 1876530 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 105 | 468585 | 468767 | - | NZ_CP020121.1 | Comamonas kerstersii |
| 106 | 1302565 | 1302747 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 107 | 2141760 | 2141939 | - | NZ_CP054626.1 | Cupriavidus gilardii |
| 108 | 2040089 | 2040271 | - | NZ_CP060790.1 | Acidovorax monticola |
| 109 | 128632 | 128814 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 110 | 6382474 | 6382656 | + | NZ_CP065748.1 | Delftia lacustris |
| 111 | 6337954 | 6338136 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 112 | 1742962 | 1743165 | - | NZ_CP042808.1 | Acetobacter oryzoeni |
| 113 | 641168 | 641371 | - | NC_021991.1 | Acetobacter pasteurianus 386B |
| 114 | 1395646 | 1395849 | - | NZ_CP015164.1 | Acetobacter ascendens |
| 115 | 1965937 | 1966140 | - | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 116 | 3172476 | 3172658 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 117 | 2505115 | 2505294 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 118 | 1285786 | 1285968 | + | NZ_CP027792.1 | Pulveribacter suum |
| 119 | 3921195 | 3921377 | - | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 120 | 3629855 | 3630037 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 121 | 1338504 | 1338686 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 122 | 1478172 | 1478354 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 123 | 4445644 | 4445826 | - | NZ_CP043575.1 | Comamonas koreensis |
| 124 | 3628942 | 3629124 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 125 | 1096022 | 1096201 | + | NZ_CP013481.2 | Pandoraea apista |
| 126 | 1748546 | 1748725 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 127 | 2516040 | 2516219 | - | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 128 | 2777299 | 2777478 | - | NZ_CP039287.1 | Cupriavidus necator H16 |
| 129 | 3454193 | 3454372 | - | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 130 | 2534925 | 2535104 | - | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 131 | 1843800 | 1843982 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 132 | 3667277 | 3667459 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 133 | 1387710 | 1387889 | + | NZ_CP009122.1 | Sphingopyxis fribergensis |
| 134 | 3052309 | 3052488 | - | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 135 | 4910358 | 4910537 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 136 | 1560686 | 1560877 | + | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 137 | 17985 | 18191 | + | NZ_CP020612.1 | Paracoccus contaminans |
| 138 | 1473583 | 1473762 | - | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 139 | 6700187 | 6700360 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 140 | 2034858 | 2035037 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 141 | 672019 | 672201 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 142 | 2979542 | 2979745 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 143 | 668815 | 668994 | - | NZ_CP068286.1 | Ralstonia syzygii subsp. celebesensis |
| 144 | 1876668 | 1876850 | - | NZ_CP047650.1 | Xylophilus rhododendri |
| 145 | 1829739 | 1829921 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 146 | 1201512 | 1201682 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 147 | 1329320 | 1329502 | - | NZ_CP037948.1 | Qipengyuania sediminis |
| 148 | 1453590 | 1453778 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 149 | 133703 | 133906 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 150 | 128608 | 128811 | - | NZ_CP038141.1 | Swingsia samuiensis |
| 151 | 385890 | 386069 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 152 | 2090651 | 2090833 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 153 | 2153492 | 2153686 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 154 | 2034493 | 2034663 | - | NZ_LS483470.1 | Leminorella richardii |
| 155 | 4815945 | 4816118 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 156 | 2404913 | 2405119 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 157 | 2317756 | 2317929 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 158 | 2210676 | 2210849 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 159 | 6356179 | 6356352 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 160 | 2972356 | 2972538 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 161 | 2226730 | 2226912 | + | NZ_AP019700.1 | Stella humosa |
| 162 | 5455748 | 5455921 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 163 | 5539390 | 5539563 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 164 | 6000023 | 6000196 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 165 | 6277403 | 6277576 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 166 | 2581215 | 2581388 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 167 | 5690320 | 5690493 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 168 | 6059120 | 6059293 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 169 | 5863645 | 5863818 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 170 | 2261219 | 2261392 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 171 | 1213311 | 1213475 | + | NZ_CP025120.1 | Kangiella profundi |
| 172 | 3849305 | 3849487 | - | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 173 | 2693050 | 2693223 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 174 | 3053865 | 3054038 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 175 | 3269181 | 3269354 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 176 | 6781767 | 6781940 | + | NZ_CP070326.1 | Streptomyces noursei |
| 177 | 3057503 | 3057676 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 178 | 6652350 | 6652523 | + | NZ_CP022685.1 | Streptomyces formicae |
| 179 | 5396817 | 5396990 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 180 | 5994444 | 5994617 | + | NZ_CP070242.1 | Streptomyces californicus |
| 181 | 6051532 | 6051705 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 182 | 2802528 | 2802701 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 183 | 2211206 | 2211379 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 184 | 1801428 | 1801610 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 185 | 5380131 | 5380304 | + | NZ_CP029043.1 | Streptomyces nigra |
| 186 | 5718453 | 5718626 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 187 | 2724768 | 2724941 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 188 | 5663143 | 5663316 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 189 | 5592897 | 5593070 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 190 | 2564090 | 2564263 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 191 | 5657172 | 5657345 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 192 | 1353164 | 1353367 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 193 | 1760737 | 1760910 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 194 | 1180185 | 1180349 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 195 | 4203459 | 4203635 | + | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 196 | 7597465 | 7597638 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 197 | 4538435 | 4538608 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 198 | 2059567 | 2059740 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 199 | 7931256 | 7931429 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 200 | 7380065 | 7380238 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 201 | 5835361 | 5835534 | + | NZ_CP031194.1 | Streptomyces paludis |
| 202 | 6239348 | 6239521 | + | NZ_CP023691.1 | Streptomyces platensis |
| 203 | 6145213 | 6145386 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 204 | 1709266 | 1709448 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 205 | 6402623 | 6402796 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 206 | 5446435 | 5446608 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 207 | 2264164 | 2264337 | - | NZ_CP022310.1 | Streptomyces calvus |
| 208 | 6213207 | 6213380 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 209 | 6242802 | 6242975 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 210 | 2510308 | 2510490 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 211 | 2605547 | 2605738 | + | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 212 | 1999192 | 1999383 | + | NC_002932.3 | Chlorobaculum tepidum TLS |
| 213 | 151834 | 152025 | - | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 214 | 2578603 | 2578776 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 215 | 6633891 | 6634064 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 216 | 2766944 | 2767117 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 217 | 3024788 | 3024961 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 218 | 1631115 | 1631288 | - | NZ_CP065253.1 | Streptomyces clavuligerus |
| 219 | 1966017 | 1966190 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 220 | 1875849 | 1876022 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 221 | 1899562 | 1899732 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 222 | 1908272 | 1908442 | + | NZ_LR134531.1 | Pragia fontium |
| 223 | 1957350 | 1957520 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 224 | 6488326 | 6488499 | + | NZ_CP027306.1 | Streptomyces atratus |
| 225 | 2888154 | 2888336 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 226 | 2876665 | 2876847 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 227 | 1334382 | 1334564 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 228 | 2876513 | 2876686 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 229 | 2471858 | 2472061 | - | NZ_CP053708.1 | Lichenicola cladoniae |
| 230 | 6049168 | 6049341 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 231 | 5738070 | 5738243 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 232 | 2946811 | 2946984 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 233 | 1796160 | 1796342 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 234 | 5376461 | 5376634 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 235 | 1487978 | 1488151 | - | NC_020990.1 | Streptomyces albidoflavus |
| 236 | 1867010 | 1867183 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 237 | 2772908 | 2773087 | - | NZ_CP021106.3 | Nitrosospira lacus |
| 238 | 3006390 | 3006563 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 239 | 2757440 | 2757613 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 240 | 1943776 | 1943949 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 241 | 2056487 | 2056669 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 242 | 4729673 | 4729846 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 243 | 2529386 | 2529559 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 244 | 7193383 | 7193556 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 245 | 1404373 | 1404546 | + | NZ_CP030862.1 | Streptomyces globosus |
| 246 | 734746 | 734928 | + | NZ_CP009365.1 | Pseudomonas soli |
| 247 | 5854056 | 5854229 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 248 | 3983663 | 3983845 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 249 | 4416588 | 4416770 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 250 | 1771399 | 1771581 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 251 | 7648185 | 7648358 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 252 | 679491 | 679670 | - | NZ_CP012371.1 | Nitrosospira briensis C-128 |
| 253 | 1950253 | 1950435 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 254 | 1716072 | 1716254 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 255 | 4142595 | 4142777 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 256 | 1683954 | 1684136 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 257 | 6366690 | 6366863 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 258 | 6520524 | 6520706 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 259 | 4495378 | 4495551 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 260 | 2976868 | 2977050 | - | NZ_CP043146.1 | Bordetella holmesii |
| 261 | 1975664 | 1975837 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 262 | 6618535 | 6618708 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 263 | 4984228 | 4984401 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 264 | 5744941 | 5745114 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 265 | 5685738 | 5685911 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 266 | 2963171 | 2963344 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 267 | 1451173 | 1451355 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 268 | 662121 | 662303 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 269 | 2115883 | 2116065 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 270 | 2244891 | 2245082 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 271 | 6028677 | 6028850 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 272 | 4660745 | 4660927 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 273 | 5199903 | 5200076 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 274 | 4779473 | 4779646 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 275 | 4965658 | 4965831 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 276 | 3473519 | 3473701 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 277 | 4058102 | 4058284 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 278 | 3306273 | 3306455 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 279 | 3258473 | 3258646 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 280 | 6137141 | 6137314 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 281 | 2067491 | 2067673 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 282 | 1383312 | 1383494 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 283 | 5274404 | 5274586 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 284 | 1452109 | 1452291 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 285 | 5925359 | 5925532 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 286 | 1895936 | 1896118 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 287 | 1951738 | 1951920 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 288 | 1842669 | 1842851 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 289 | 4342460 | 4342642 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 290 | 148861 | 149043 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 291 | 4555594 | 4555776 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 292 | 1773904 | 1774086 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 293 | 4373764 | 4373946 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 294 | 4125166 | 4125348 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 295 | 4611859 | 4612041 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 296 | 1746587 | 1746769 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 297 | 4684153 | 4684335 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 298 | 4577160 | 4577342 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 299 | 262281 | 262463 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 300 | 4847211 | 4847393 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 301 | 4809742 | 4809924 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 302 | 4837205 | 4837387 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 303 | 4706257 | 4706439 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 304 | 5327135 | 5327317 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 305 | 6067087 | 6067269 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 306 | 4819559 | 4819741 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 307 | 1977660 | 1977842 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 308 | 2017539 | 2017721 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 309 | 4007373 | 4007537 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 310 | 2882299 | 2882469 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 311 | 5298070 | 5298243 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 312 | 2760392 | 2760562 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 313 | 6748114 | 6748287 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 314 | 3156156 | 3156344 | - | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 315 | 3257789 | 3257968 | - | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 316 | 1505515 | 1505685 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 317 | 2861064 | 2861234 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 318 | 3068202 | 3068372 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 319 | 2991492 | 2991662 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 320 | 4484987 | 4485157 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 321 | 1897033 | 1897203 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 322 | 2018759 | 2018929 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 323 | 1811628 | 1811798 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 324 | 1035324 | 1035494 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 325 | 4799143 | 4799313 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 326 | 1657339 | 1657509 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 327 | 2857724 | 2857894 | - | NZ_LT615367.1 | Dickeya aquatica |
| 328 | 1871791 | 1871961 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 329 | 2904003 | 2904173 | - | NZ_CP025799.1 | Dickeya zeae |
| 330 | 1845384 | 1845554 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 331 | 2934655 | 2934825 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 332 | 242748 | 242918 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 333 | 2997201 | 2997371 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 334 | 4720577 | 4720747 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 335 | 1133514 | 1133696 | + | NZ_AP018721.1 | Sulfuritortus calidifontis |
| 336 | 2767397 | 2767567 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 337 | 2692883 | 2693053 | - | NZ_CP050150.1 | Hafnia alvei |
| 338 | 3752934 | 3753107 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 339 | 3136944 | 3137114 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 340 | 1451732 | 1451902 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 341 | 2274400 | 2274570 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 342 | 83086 | 83256 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 343 | 1787810 | 1787998 | - | NC_015681.1 | Thermodesulfatator indicus DSM 15286 |
| 344 | 887944 | 888132 | - | NZ_AP014946.1 | Variibacter gotjawalensis |
| 345 | 1170976 | 1171155 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 346 | 4780467 | 4780640 | + | NZ_CP054938.1 | Streptomyces harbinensis |
| 347 | 1615903 | 1616091 | + | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 348 | 2068480 | 2068659 | + | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 349 | 1402114 | 1402299 | + | NC_008148.1 | Rubrobacter xylanophilus DSM 9941 |
| 350 | 1846811 | 1847002 | - | NZ_LN681225.1 | Legionella hackeliae |
| 351 | 1425027 | 1425194 | - | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 352 | 1464089 | 1464280 | + | NZ_LT906451.1 | Legionella lansingensis |
| 353 | 145157 | 145348 | - | NZ_LR134428.1 | Legionella adelaidensis |
| 354 | 2157393 | 2157572 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 355 | 1271951 | 1272112 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 356 | 61851 | 62021 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 357 | 534996 | 535187 | + | NZ_LR134374.1 | Legionella spiritensis |
| 358 | 1789037 | 1789207 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 359 | 2175384 | 2175554 | - | NZ_LR134167.1 | Avibacterium volantium |
| 360 | 918735 | 918905 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 361 | 1893333 | 1893503 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 362 | 1006639 | 1006809 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 363 | 779248 | 779418 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 364 | 832917 | 833087 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 365 | 2319476 | 2319646 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 366 | 2190074 | 2190244 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 367 | 1924573 | 1924734 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 368 | 2140376 | 2140558 | - | NZ_CP065728.1 | Moraxella nonliquefaciens |
| 369 | 470854 | 471024 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 370 | 882959 | 883129 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 371 | 1621050 | 1621220 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 372 | 2301649 | 2301819 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 373 | 2347994 | 2348164 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 374 | 1812741 | 1812911 | - | NZ_CP016604.1 | Otariodibacter oris |
| 375 | 1204842 | 1205027 | - | NZ_CP014234.1 | Moraxella osloensis |
| 376 | 1475293 | 1475463 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 377 | 1305987 | 1306157 | + | NZ_CP028926.1 | Pasteurella multocida |
| 378 | 332553 | 332723 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 379 | 161413 | 161583 | + | NZ_CP018804.1 | Histophilus somni |
| 380 | 1856232 | 1856402 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 381 | 1633822 | 1634013 | + | NZ_LT906442.1 | Legionella waltersii |
| 382 | 2555273 | 2555455 | - | NZ_CP030241.1 | Moraxella bovis |
| 383 | 749441 | 749611 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 384 | 1544591 | 1544773 | - | NC_014147.1 | Moraxella catarrhalis BBH18 |
| 385 | 128697 | 128879 | - | NZ_LR134343.1 | Moraxella cuniculi |
| 386 | 1690579 | 1690761 | - | NZ_CP011381.2 | Moraxella bovoculi |
| 387 | 292813 | 292983 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 388 | 140276 | 140446 | + | NZ_CP061280.1 | Mannheimia bovis |
| 389 | 373577 | 373747 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 390 | 1787097 | 1787279 | - | NZ_CP011158.1 | Moraxella ovis |
| 391 | 674989 | 675159 | - | NZ_CP046531.1 | Mannheimia ovis |
| 392 | 719644 | 719814 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 393 | 1548178 | 1548369 | + | NZ_CP013742.1 | Legionella pneumophila |
| 394 | 653733 | 653915 | + | NZ_CP045650.1 | Acinetobacter wanghuae |
| 395 | 2400551 | 2400733 | - | NZ_CP044483.1 | Acinetobacter schindleri |
| 396 | 1444376 | 1444546 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 397 | 1149877 | 1150062 | + | NZ_CP071766.1 | Acinetobacter towneri |
| 398 | 866276 | 866461 | + | NZ_CP032134.1 | Acinetobacter chinensis |
| 399 | 1225174 | 1225359 | - | NZ_CP040105.1 | Acinetobacter nosocomialis M2 |
| 400 | 94954 | 95139 | + | NC_016603.1 | Acinetobacter pittii PHEA-2 |
| 401 | 1087542 | 1087727 | - | NZ_CP070518.1 | Acinetobacter calcoaceticus |
| 402 | 3114913 | 3115098 | - | NZ_CP053391.1 | Acinetobacter lactucae |
| 403 | 3135625 | 3135810 | - | NZ_CP015121.1 | Acinetobacter baumannii |
| 404 | 3245605 | 3245790 | - | NZ_CP065820.1 | Acinetobacter seifertii |
| 405 | 3315559 | 3315744 | - | NC_014259.1 | Acinetobacter oleivorans DR1 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017310.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02504.17 | 0.64 | 261 | 35 | same-strand | Fatty acid synthesis protein |
| 2 | PF02620.19 | 0.89 | 362 | 17.0 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
++ More..