Result : Q6NH98
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sec-independent protein translocase protein TatA |
| NCBI Accession ID | BX248357.1 |
| Organism | Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) |
| Left | 207922 |
| Right | 208188 |
| Strand | - |
| Nucleotide Sequence | ATGAACCTAGGACCTACCGAAATCCTGTTAATCCTCGTCATCGTTGTACTGCTTTTTGGCGCCAAAAAGCTCCCCGATGCAGCGCGTTCTCTTGGCCGCTCTATGCGCATTTTTAAGTCTGAAGTAAAAGAAATGAGCAATGACGATCAACGCTATGAGGAGCAACAGCAGCAGCGTCAGATCGCAGCACAGGCTCAGCAGCAAGTCGTCAATCCTGTAGAGATTCCACAGCCACAGCCAACTGATATTCAGCGTCCACAGCAATAA |
| Sequence | MNLGPTEILLILVIVVLLFGAKKLPDAARSLGRSMRIFKSEVKEMSNDDQRYEEQQQQRQIAAQAQQQVVNPVEIPQPQPTDIQRPQQ |
| Source of smORF | Swiss-Prot |
| Function | Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. {ECO:0000255|HAMAP-Rule:MF_00236}. |
| Pubmed ID | 14602910 |
| Domain | CDD:294511 |
| Functional Category | Others |
| Uniprot ID | Q6NH98 |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 17
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1213189 | 1213455 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 2 | 1228409 | 1228675 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 3 | 1093010 | 1093258 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 4 | 1464095 | 1464331 | - | NZ_CP033896.1 | Corynebacterium choanae |
| 5 | 1396589 | 1396852 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 6 | 2811739 | 2811987 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 7 | 1126793 | 1127008 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 8 | 3595504 | 3595719 | + | NZ_AP023396.1 | Nocardia wallacei |
| 9 | 1067969 | 1068244 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 10 | 1078907 | 1079182 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 11 | 2338240 | 2338482 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 12 | 2637327 | 2637569 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 13 | 1457703 | 1457966 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 14 | 1939604 | 1939861 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 15 | 6423536 | 6423814 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 16 | 1750970 | 1751248 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 17 | 1789379 | 1789678 | - | NZ_CP059991.1 | Streptomyces gardneri |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR738855.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00557.26 | 0.65 | 11 | 4665 | same-strand | Metallopeptidase family M24 |
| 2 | PF08148.14 | 1.0 | 17 | 1143.5 | same-strand | DSHCT (NUC185) domain |
| 3 | PF00270.31 | 1.0 | 17 | 1137 | same-strand | DEAD/DEAH box helicase |
| 4 | PF04851.17 | 1.0 | 17 | 1137 | same-strand | Type III restriction enzyme, res subunit |
| 5 | PF00902.20 | 1.0 | 17 | 73 | same-strand | Sec-independent protein translocase protein (TatC) |
| 6 | PF19187.2 | 1.0 | 17 | 98 | same-strand | PafC helix-turn-helix domain |
| 7 | PF13280.8 | 1.0 | 17 | 989.0 | same-strand | WYL domain |
| 8 | PF03136.17 | 0.76 | 13 | 2798 | same-strand | Pup-ligase protein |
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