Result : A8YUK5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative membrane protein insertion efficiency factor |
| NCBI Accession ID | CP000517.1 |
| Organism | Lactobacillus helveticus (strain DPC 4571) |
| Left | 798181 |
| Right | 798474 |
| Strand | + |
| Nucleotide Sequence | TTGCGGAAGATTTTGATTTTTATCGTACGCATTTATCAGACTTTGATTTCACCATTATTTCCGCCGAGTTGTAGGTATTATCCCACATGTTCTAATTACATGATCGATGCTTTGAAAAAACATGGACCAATTTTAGGACTAATTATGGGAATTAGTCGTACACTAAGATGTAACCCATTTGTACGCGGTGGGGTGGACCCAGTTCCTGATAATTTTACTGTTTTTCGAAATCCACATCCTGAGAGATACGAAGATGAAATTATTGCATCTAAGTTTCACTCGAATAGCAAGTAG |
| Sequence | MRKILIFIVRIYQTLISPLFPPSCRYYPTCSNYMIDALKKHGPILGLIMGISRTLRCNPFVRGGVDPVPDNFTVFRNPHPERYEDEIIASKFHSNSK |
| Source of smORF | Swiss-Prot |
| Function | Could be involved in insertion of integral membrane proteins into the membrane. {ECO:0000255|HAMAP-Rule:MF_00386}. |
| Pubmed ID | 17993529 |
| Domain | CDD:412414 |
| Functional Category | Others |
| Uniprot ID | A8YUK5 |
| ORF Length (Amino Acid) | 97 |
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| Conservation Analysis |
No. of Species: 78
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 533407 | 533700 | + | NZ_CP015444.1 | Lactobacillus helveticus |
| 2 | 1397261 | 1397554 | - | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 3 | 764329 | 764622 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 4 | 1465992 | 1466285 | - | NZ_CP059829.1 | Lactobacillus ultunensis |
| 5 | 839525 | 839797 | - | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 6 | 1073873 | 1074166 | - | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 7 | 752738 | 753031 | + | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 8 | 659398 | 659691 | + | NZ_CP029476.1 | Lactobacillus apis |
| 9 | 1560572 | 1560865 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 10 | 811792 | 812085 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 11 | 1671813 | 1672106 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 12 | 1339629 | 1339865 | - | NZ_CP017996.1 | Companilactobacillus crustorum |
| 13 | 780578 | 780871 | + | NZ_CP049366.1 | Companilactobacillus pabuli |
| 14 | 1276362 | 1276655 | - | NZ_AP018549.1 | Lactobacillus paragasseri |
| 15 | 1235134 | 1235427 | - | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 16 | 979240 | 979530 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 17 | 1236524 | 1236817 | - | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 18 | 297301 | 297561 | + | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 19 | 1236120 | 1236407 | - | NZ_CP018809.1 | Lactobacillus jensenii |
| 20 | 849771 | 850049 | + | NZ_CP024610.1 | Lactobacillus terrae |
| 21 | 486293 | 486598 | + | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 22 | 773031 | 773342 | - | NZ_CP031513.1 | Bombilactobacillus bombi |
| 23 | 611248 | 611565 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 24 | 1399906 | 1400202 | + | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 25 | 626231 | 626518 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 26 | 1952192 | 1952494 | - | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 27 | 832295 | 832552 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 28 | 669954 | 670211 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 29 | 1276783 | 1277043 | - | NZ_CP019981.1 | Pediococcus inopinatus |
| 30 | 1127209 | 1127514 | + | NC_014334.2 | Lacticaseibacillus paracasei |
| 31 | 1078295 | 1078600 | + | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 32 | 1111540 | 1111845 | + | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 33 | 923382 | 923657 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 34 | 178182 | 178475 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 35 | 640497 | 640757 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 36 | 1366647 | 1366922 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 37 | 858278 | 858577 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 38 | 2073330 | 2073605 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 39 | 662055 | 662312 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 40 | 1826790 | 1827077 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 41 | 1677235 | 1677513 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 42 | 2342437 | 2342712 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 43 | 1529362 | 1529679 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 44 | 645759 | 646055 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 45 | 1380993 | 1381247 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 46 | 1589945 | 1590256 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 47 | 222678 | 222920 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 48 | 573757 | 574005 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 49 | 852334 | 852630 | + | NZ_CP065211.1 | Enterococcus lactis |
| 50 | 772298 | 772594 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 51 | 784940 | 785206 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 52 | 425593 | 425865 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 53 | 1483225 | 1483500 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 54 | 907478 | 907720 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 55 | 683341 | 683598 | + | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 56 | 2071332 | 2071607 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 57 | 1328762 | 1329046 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 58 | 1069206 | 1069496 | + | NZ_CP014163.1 | Aerococcus urinaehominis |
| 59 | 27887 | 28171 | - | NZ_AP022823.1 | Enterococcus saigonensis |
| 60 | 308693 | 308953 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 61 | 2194076 | 2194336 | - | NZ_CP014164.1 | Aerococcus viridans |
| 62 | 85242 | 85499 | + | NZ_CP013988.1 | Aerococcus urinaeequi |
| 63 | 1043418 | 1043705 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 64 | 175497 | 175775 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 65 | 328309 | 328569 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 66 | 674828 | 675079 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 67 | 1796316 | 1796582 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 68 | 1401319 | 1401582 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 69 | 1708355 | 1708618 | - | NZ_CP039457.1 | Streptococcus pasteurianus |
| 70 | 275219 | 275467 | + | NZ_LR134275.1 | Streptococcus vestibularis |
| 71 | 930657 | 930932 | - | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 72 | 1341865 | 1342125 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 73 | 839731 | 840012 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 74 | 288045 | 288293 | + | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 75 | 2509297 | 2509545 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 76 | 551526 | 551768 | + | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 77 | 1925828 | 1926064 | - | NC_022664.1 | Spiribacter curvatus |
| 78 | 1661285 | 1661557 | + | NZ_CP066049.1 | Actinomyces naeslundii |
| 79 | 2767648 | 2767896 | + | NZ_CP066060.1 | Actinomyces oris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP015444.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02823.18 | 0.68 | 53 | 2041 | same-strand | ATP synthase, Delta/Epsilon chain, beta-sandwich domain |
| 2 | PF00401.22 | 0.68 | 53 | 2041 | same-strand | ATP synthase, Delta/Epsilon chain, long alpha-helix domain |
| 3 | PF06612.13 | 0.68 | 53 | 1663 | same-strand | Protein of unknown function (DUF1146) |
| 4 | PF11184.10 | 0.62 | 48 | 11.0 | same-strand | Protein of unknown function (DUF2969) |
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