Result : Q6AJQ3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CR522870.1 |
| Organism | Desulfotalea psychrophila (strain LSv54 / DSM 12343) |
| Left | 3059245 |
| Right | 3059466 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAAAAGAACCTTTGAATCTTCACTGAGCAAACTTGAAAAAATCACAGAAGAACTTGAAAGTGGCGAATTAAGTCTCGAAGGAAGTCTGAAAAAATTCGATGAGGGCATCCAACTCGCCCAGTTCTGCAATGAACAACTTGAAGGGGCCCGGGCAAAGGTAGAAATACTGATGAAAAAAGATGGCAAAGTTCAGGCAGTCCCCTTCGAAGAAGAGTAA |
| Sequence | MAKRTFESSLSKLEKITEELESGELSLEGSLKKFDEGIQLAQFCNEQLEGARAKVEILMKKDGKVQAVPFEEE |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 15305914 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q6AJQ3 |
| ORF Length (Amino Acid) | 73 |
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| Conservation Analysis |
No. of Species: 21
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3059245 | 3059466 | + | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 2 | 2769988 | 2770236 | - | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 3 | 2804228 | 2804473 | - | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 4 | 8631 | 8879 | + | NZ_CP054140.1 | Desulfobulbus oligotrophicus |
| 5 | 11718 | 11966 | + | NZ_CP021255.1 | Desulfobulbus oralis |
| 6 | 1229112 | 1229342 | + | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 7 | 4523369 | 4523611 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 8 | 2161777 | 2162007 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 9 | 3324064 | 3324291 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 10 | 1453142 | 1453369 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 11 | 590293 | 590526 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 12 | 2891853 | 2892083 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 13 | 1980060 | 1980305 | - | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 14 | 1612856 | 1613086 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 15 | 2537866 | 2538096 | - | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 16 | 2653839 | 2654027 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 17 | 1015992 | 1016192 | - | NZ_LR134484.1 | Gemella haemolysans |
| 18 | 670063 | 670254 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 19 | 1190174 | 1190374 | + | NZ_CP046314.1 | Gemella morbillorum |
| 20 | 2104130 | 2104363 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 21 | 3200899 | 3201105 | - | NZ_CP018099.1 | Caldithrix abyssi DSM 13497 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_006138.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00348.19 | 0.95 | 20 | 6.5 | same-strand | Polyprenyl synthetase |
| 2 | PF13292.8 | 0.81 | 17 | 935 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.81 | 17 | 935 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.81 | 17 | 935 | same-strand | Transketolase, C-terminal domain |
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