Result : Q6A5M9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S6 |
| NCBI Accession ID | AE017283.1 |
| Organism | Cutibacterium acnes (strain DSM 16379 / KPA171202) (Propionibacterium acnes) |
| Left | 2413394 |
| Right | 2413684 |
| Strand | - |
| Nucleotide Sequence | ATGCGTAAGTACGAGGTCATGATCATCATTGATCCGACCGTCGAAGAGCGTCAGGTCGATTCCCTCATGGAGAAGTACCTGAAGGTCATCACTGACGAGAAGGGCACCGTCGACAATGTCGACGTGTGGGGCAAGCGTCGTCTCGCTTACGACATTCAGAAGAAGTCGGAAGGCATCTACGTCGTCGTCAACGCGACCTGCGAGCCCGCGACCATCCAGGAGTTGGATCGTCTTCTCGCCATCGACGAGAAGATTATGCGCACTAAGGTCATGCGTCCCGAGATCCACTGA |
| Sequence | MRKYEVMIIIDPTVEERQVDSLMEKYLKVITDEKGTVDNVDVWGKRRLAYDIQKKSEGIYVVVNATCEPATIQELDRLLAIDEKIMRTKVMRPEIH |
| Source of smORF | Swiss-Prot |
| Function | Binds together with S18 to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00360}. |
| Pubmed ID | 15286373 |
| Domain | CDD:412366 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q6A5M9 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 416
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2413394 | 2413684 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 2 | 2462702 | 2462992 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 3 | 393316 | 393606 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 4 | 336128 | 336418 | + | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 5 | 1918989 | 1919279 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 6 | 943666 | 943956 | - | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 7 | 1151764 | 1152051 | + | NZ_LT996886.1 | Tessaracoccus timonensis |
| 8 | 1513644 | 1513931 | - | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 9 | 3641368 | 3641673 | + | NZ_CP013745.1 | Arthrobacter alpinus |
| 10 | 1891756 | 1892061 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 11 | 3129321 | 3129626 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 12 | 4114940 | 4115245 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 13 | 2926649 | 2926954 | + | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 14 | 3986252 | 3986539 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 15 | 2795466 | 2795771 | - | NZ_CP035504.1 | Kocuria indica |
| 16 | 2954729 | 2955019 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 17 | 2424120 | 2424407 | - | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 18 | 2404438 | 2404725 | - | NZ_CP044548.2 | Janibacter melonis |
| 19 | 646298 | 646603 | + | NZ_CP013254.1 | Kocuria flava |
| 20 | 448791 | 449096 | - | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 21 | 5599777 | 5600067 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 22 | 2476980 | 2477285 | - | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 23 | 3198451 | 3198756 | - | NZ_LR131272.1 | Arthrobacter agilis |
| 24 | 1289942 | 1290232 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 25 | 3386038 | 3386325 | + | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 26 | 973346 | 973648 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 27 | 1294663 | 1294968 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 28 | 3024909 | 3025199 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 29 | 11239684 | 11239974 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 30 | 5198218 | 5198505 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 31 | 2475040 | 2475345 | - | NZ_CP061539.1 | Rothia terrae |
| 32 | 367343 | 367633 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 33 | 1386515 | 1386811 | - | NZ_CP019607.1 | Tessaracoccus flavescens |
| 34 | 2216486 | 2216776 | + | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 35 | 2508729 | 2509016 | - | NZ_LR134406.1 | Arachnia propionica |
| 36 | 3874892 | 3875161 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 37 | 4531483 | 4531773 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 38 | 135522 | 135812 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 39 | 2692584 | 2692889 | - | NZ_LR134479.1 | Rothia aeria |
| 40 | 3490061 | 3490348 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 41 | 2421408 | 2421713 | - | NZ_CP056080.1 | Rothia nasimurium |
| 42 | 4585769 | 4586059 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 43 | 144041 | 144379 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 44 | 5626664 | 5626936 | - | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 45 | 4151406 | 4151696 | - | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 46 | 4553288 | 4553575 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 47 | 3990356 | 3990646 | - | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 48 | 50692 | 50979 | + | NZ_CP066802.1 | Actinomyces weissii |
| 49 | 4229724 | 4229993 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 50 | 3743544 | 3743834 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 51 | 4370475 | 4370765 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 52 | 2062203 | 2062490 | + | NZ_LR134350.1 | Actinomyces howellii |
| 53 | 4099252 | 4099542 | - | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 54 | 3615097 | 3615387 | - | NZ_CP015866.1 | Streptomyces parvulus |
| 55 | 3495088 | 3495357 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 56 | 2648442 | 2648729 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 57 | 4224290 | 4224577 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 58 | 40505 | 40795 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 59 | 10305102 | 10305392 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 60 | 3563286 | 3563576 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 61 | 3794647 | 3794937 | + | NZ_CP023692.1 | Streptomyces vinaceus |
| 62 | 4543857 | 4544147 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 63 | 1667975 | 1668265 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 64 | 3386001 | 3386291 | - | NC_020990.1 | Streptomyces albidoflavus |
| 65 | 3792883 | 3793173 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 66 | 3041886 | 3042173 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 67 | 4724978 | 4725268 | - | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 68 | 4514149 | 4514439 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 69 | 4434659 | 4434949 | - | NZ_CP071839.1 | Streptomyces cyanogenus |
| 70 | 3405556 | 3405825 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 71 | 2530679 | 2530966 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 72 | 2369552 | 2369842 | - | NZ_CP012117.1 | Dermabacter vaginalis |
| 73 | 1748753 | 1749040 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 74 | 3689494 | 3689784 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 75 | 2580958 | 2581248 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 76 | 3514553 | 3514843 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 77 | 5060632 | 5060922 | + | NZ_CP017248.1 | Streptomyces fodineus |
| 78 | 4591049 | 4591339 | + | NZ_CP027306.1 | Streptomyces atratus |
| 79 | 3026320 | 3026607 | - | NZ_CP041146.1 | Nocardioides humi |
| 80 | 3592909 | 3593199 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 81 | 3680142 | 3680432 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 82 | 4086251 | 4086520 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 83 | 2271953 | 2272240 | + | NZ_LR134357.1 | Actinomyces israelii |
| 84 | 4005579 | 4005869 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 85 | 4376837 | 4377127 | - | NC_021985.1 | Streptomyces collinus Tu 365 |
| 86 | 3586355 | 3586645 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 87 | 3755711 | 3756001 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 88 | 3564661 | 3564951 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 89 | 1134922 | 1135209 | + | NZ_CP009312.1 | Lawsonella clevelandensis |
| 90 | 4061154 | 4061444 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 91 | 3097569 | 3097859 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 92 | 654376 | 654666 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 93 | 5098279 | 5098569 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 94 | 3374855 | 3375145 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 95 | 4016749 | 4017039 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 96 | 4290738 | 4291028 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 97 | 4286216 | 4286506 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 98 | 6198781 | 6199071 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 99 | 4314432 | 4314722 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 100 | 784922 | 785209 | + | NZ_LR134363.1 | Actinomyces slackii |
| 101 | 4631176 | 4631466 | + | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 102 | 4438249 | 4438539 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 103 | 4292591 | 4292875 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 104 | 4292104 | 4292394 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 105 | 1627521 | 1627808 | - | NZ_LT906481.1 | Corynebacterium urealyticum |
| 106 | 2733465 | 2733752 | - | NZ_CP066060.1 | Actinomyces oris |
| 107 | 2544821 | 2545108 | - | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 108 | 3565393 | 3565683 | - | NZ_CP022310.1 | Streptomyces calvus |
| 109 | 3692612 | 3692902 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 110 | 4428109 | 4428399 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 111 | 3355296 | 3355583 | - | NZ_CP013290.1 | Janibacter indicus |
| 112 | 3935070 | 3935360 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 113 | 68723 | 69013 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 114 | 75116 | 75406 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 115 | 75102 | 75392 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 116 | 3915883 | 3916173 | - | NZ_CP020700.1 | Streptomyces tsukubensis |
| 117 | 4804456 | 4804746 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 118 | 1622799 | 1623086 | - | NZ_CP066049.1 | Actinomyces naeslundii |
| 119 | 3539688 | 3539975 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 120 | 4375139 | 4375429 | + | NZ_CP051006.1 | Streptomyces griseofuscus |
| 121 | 1802713 | 1803003 | - | NZ_CP022316.1 | Brachybacterium avium |
| 122 | 4011348 | 4011638 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 123 | 4768412 | 4768702 | - | NZ_CP022685.1 | Streptomyces formicae |
| 124 | 3809146 | 3809436 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 125 | 3815488 | 3815778 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 126 | 1966763 | 1967068 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 127 | 245564 | 245869 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 128 | 4823559 | 4823849 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 129 | 1763019 | 1763309 | - | NZ_CP066065.1 | Schaalia meyeri |
| 130 | 1694302 | 1694592 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 131 | 4000827 | 4001117 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 132 | 1775202 | 1775471 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 133 | 3660793 | 3661083 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 134 | 3778139 | 3778429 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 135 | 4380838 | 4381128 | + | NZ_CP034687.1 | Streptomyces griseoviridis |
| 136 | 3515088 | 3515378 | - | NZ_CP031194.1 | Streptomyces paludis |
| 137 | 3468757 | 3469047 | - | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 138 | 3627601 | 3627891 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 139 | 1240394 | 1240684 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 140 | 80082 | 80372 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 141 | 2115122 | 2115412 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 142 | 4770466 | 4770756 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 143 | 3902837 | 3903127 | + | NZ_CP023701.1 | Streptomyces subrutilus |
| 144 | 4376229 | 4376519 | + | NZ_CP026652.1 | Streptomyces dengpaensis |
| 145 | 5892215 | 5892505 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 146 | 2331009 | 2331296 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 147 | 2370865 | 2371152 | - | NZ_CP053642.1 | Actinomyces marmotae |
| 148 | 3942719 | 3943009 | - | NZ_CP023695.1 | Streptomyces alboniger |
| 149 | 6571759 | 6572049 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 150 | 2403499 | 2403786 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 151 | 4665037 | 4665327 | - | NZ_CP071139.1 | Streptomyces nojiriensis |
| 152 | 2401709 | 2402014 | - | NZ_CP061538.1 | Rothia amarae |
| 153 | 3489956 | 3490246 | + | NZ_CP065253.1 | Streptomyces clavuligerus |
| 154 | 4238877 | 4239167 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 155 | 7009425 | 7009715 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 156 | 1525969 | 1526259 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 157 | 4045195 | 4045485 | - | NZ_CP063374.1 | Streptomyces chromofuscus |
| 158 | 1386032 | 1386322 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 159 | 519651 | 519938 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 160 | 1513826 | 1514116 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 161 | 3766799 | 3767089 | - | NZ_CP029043.1 | Streptomyces nigra |
| 162 | 6441266 | 6441556 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 163 | 1409448 | 1409738 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 164 | 4841687 | 4841977 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 165 | 3599870 | 3600160 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 166 | 3979092 | 3979382 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 167 | 2172146 | 2172433 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 168 | 5413806 | 5414096 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 169 | 5592885 | 5593172 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 170 | 4045919 | 4046209 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 171 | 5254905 | 5255195 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 172 | 2623267 | 2623557 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 173 | 5782034 | 5782324 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 174 | 6834235 | 6834525 | - | NZ_CP030862.1 | Streptomyces globosus |
| 175 | 5426503 | 5426793 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 176 | 10732617 | 10732907 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 177 | 3247307 | 3247597 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 178 | 3382548 | 3382838 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 179 | 3824274 | 3824564 | - | NZ_CP023407.1 | Streptomyces fungicidicus |
| 180 | 5089658 | 5089948 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 181 | 535879 | 536169 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 182 | 4930093 | 4930383 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 183 | 4899627 | 4899917 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 184 | 31603 | 31893 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 185 | 4273926 | 4274216 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 186 | 4078393 | 4078683 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 187 | 3958713 | 3959003 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 188 | 4481597 | 4481887 | + | NZ_CP023691.1 | Streptomyces platensis |
| 189 | 4906702 | 4906992 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 190 | 4514918 | 4515208 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 191 | 3777696 | 3777986 | - | NZ_CP026734.1 | Brevibacterium linens |
| 192 | 2244240 | 2244527 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 193 | 2825838 | 2826128 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 194 | 4407207 | 4407497 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 195 | 4334740 | 4335030 | - | NC_016109.1 | Kitasatospora setae KM-6054 |
| 196 | 5371731 | 5372021 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 197 | 276249 | 276539 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 198 | 2714653 | 2714943 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 199 | 4042868 | 4043158 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 200 | 5977529 | 5977819 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 201 | 5171758 | 5172048 | + | NC_013929.1 | Streptomyces scabiei 87.22 |
| 202 | 3612574 | 3612864 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 203 | 7489802 | 7490038 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 204 | 6186216 | 6186506 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 205 | 4599443 | 4599733 | - | NC_015576.1 | Mycolicibacter sinensis |
| 206 | 2002766 | 2003056 | + | NZ_AP022562.1 | Mycobacterium novum |
| 207 | 5186421 | 5186711 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 208 | 2347853 | 2348140 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 209 | 2361861 | 2362148 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 210 | 4607830 | 4608120 | - | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 211 | 3264903 | 3265199 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 212 | 4840512 | 4840802 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 213 | 4599621 | 4599911 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 214 | 3071291 | 3071581 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 215 | 5064643 | 5064933 | + | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 216 | 907271 | 907561 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 217 | 4255924 | 4256214 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 218 | 77825 | 78115 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 219 | 3935146 | 3935436 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 220 | 1153525 | 1153812 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 221 | 5844325 | 5844615 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 222 | 6937387 | 6937677 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 223 | 1341661 | 1341951 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 224 | 1255926 | 1256216 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 225 | 3823617 | 3823907 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 226 | 1812818 | 1813108 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 227 | 4322866 | 4323156 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 228 | 4334362 | 4334652 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 229 | 5090201 | 5090491 | + | NZ_CP070326.1 | Streptomyces noursei |
| 230 | 3931570 | 3931860 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 231 | 2811950 | 2812240 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 232 | 4987059 | 4987349 | + | NZ_CP023689.1 | Streptomyces chartreusis |
| 233 | 3843233 | 3843523 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 234 | 839558 | 839848 | - | NZ_CP065682.1 | Brevibacterium casei |
| 235 | 509441 | 509731 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 236 | 3941208 | 3941498 | + | NZ_CP070242.1 | Streptomyces californicus |
| 237 | 3958252 | 3958542 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 238 | 1876244 | 1876534 | - | NZ_CP060713.1 | Nocardioides mesophilus |
| 239 | 68755 | 69045 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 240 | 4824554 | 4824838 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 241 | 3281052 | 3281339 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 242 | 3784817 | 3785107 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 243 | 3309668 | 3309958 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 244 | 50587 | 50877 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 245 | 2418164 | 2418454 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 246 | 4433755 | 4434045 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 247 | 551048 | 551335 | + | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 248 | 2879739 | 2880026 | + | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 249 | 3609332 | 3609622 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 250 | 75901 | 76191 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 251 | 3291286 | 3291573 | - | NZ_CP011542.1 | Corynebacterium mustelae |
| 252 | 1821269 | 1821556 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 253 | 4486941 | 4487231 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 254 | 2378558 | 2378848 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 255 | 3803743 | 3804033 | - | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 256 | 2185356 | 2185646 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 257 | 2236469 | 2236759 | - | NZ_CP035810.1 | Brevibacterium luteolum |
| 258 | 5102892 | 5103182 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 259 | 1091919 | 1092221 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 260 | 50426 | 50716 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 261 | 3711736 | 3712026 | - | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 262 | 1478460 | 1478750 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 263 | 61351 | 61638 | + | NZ_CP033896.1 | Corynebacterium choanae |
| 264 | 687195 | 687485 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 265 | 68627 | 68917 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 266 | 1554329 | 1554619 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 267 | 2540864 | 2541151 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 268 | 2760528 | 2760830 | - | NZ_CP060789.1 | Tessaracoccus defluvii |
| 269 | 4495986 | 4496276 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 270 | 3835013 | 3835303 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 271 | 4289256 | 4289525 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 272 | 86437 | 86727 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 273 | 246607 | 246888 | - | NZ_CP027433.1 | Gordonia iterans |
| 274 | 58192 | 58482 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 275 | 58244 | 58534 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 276 | 294615 | 294866 | + | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 277 | 605992 | 606282 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 278 | 512421 | 512711 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 279 | 2708881 | 2709168 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 280 | 2412835 | 2413125 | - | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 281 | 4969789 | 4970079 | + | NZ_AP022617.1 | Mycolicibacterium monacense |
| 282 | 5143430 | 5143717 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 283 | 4679229 | 4679516 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 284 | 508446 | 508733 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 285 | 5188985 | 5189272 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 286 | 3425864 | 3426154 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 287 | 2110384 | 2110671 | + | NZ_CP032788.1 | Corynebacterium xerosis |
| 288 | 4717363 | 4717653 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 289 | 4933338 | 4933628 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 290 | 4971045 | 4971335 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 291 | 2201152 | 2201439 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 292 | 1720280 | 1720567 | + | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 293 | 2140879 | 2141169 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 294 | 3814723 | 3815019 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 295 | 1976487 | 1976777 | - | NZ_LN849456.1 | Devriesea agamarum |
| 296 | 2115884 | 2116171 | + | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 297 | 3813821 | 3814111 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 298 | 6043996 | 6044286 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 299 | 283272 | 283544 | + | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 300 | 296644 | 296916 | + | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 301 | 3400745 | 3401035 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 302 | 6729294 | 6729581 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 303 | 2881212 | 2881502 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 304 | 2922407 | 2922694 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 305 | 4146963 | 4147250 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 306 | 2270963 | 2271250 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 307 | 2289022 | 2289309 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 308 | 2824033 | 2824320 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 309 | 7698825 | 7699115 | + | NZ_AP023396.1 | Nocardia wallacei |
| 310 | 2331190 | 2331477 | + | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 311 | 1990199 | 1990486 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 312 | 3154488 | 3154778 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 313 | 3487834 | 3488121 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 314 | 2249476 | 2249763 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 315 | 1380199 | 1380486 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 316 | 2253792 | 2254079 | - | NZ_CP008944.1 | Corynebacterium atypicum |
| 317 | 1689453 | 1689740 | - | NZ_CP068168.1 | Corynebacterium amycolatum |
| 318 | 3473266 | 3473556 | - | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 319 | 7484612 | 7484902 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 320 | 3658886 | 3659173 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 321 | 1893469 | 1893759 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 322 | 3405864 | 3406151 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 323 | 5541067 | 5541348 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 324 | 2693154 | 2693444 | + | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 325 | 4590744 | 4591034 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 326 | 8016818 | 8017108 | - | NZ_AP017900.1 | Nocardia seriolae |
| 327 | 3085840 | 3086130 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 328 | 3739951 | 3740238 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 329 | 7054140 | 7054460 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 330 | 1817237 | 1817524 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 331 | 2402185 | 2402475 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 332 | 373553 | 373804 | + | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 333 | 5907442 | 5907729 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 334 | 1590874 | 1591182 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 335 | 5013877 | 5014167 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 336 | 5517146 | 5517436 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 337 | 308816 | 309103 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 338 | 3602140 | 3602436 | - | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 339 | 2554749 | 2555036 | - | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 340 | 1957839 | 1958102 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 341 | 5200304 | 5200591 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 342 | 1840013 | 1840276 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 343 | 7202411 | 7202725 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 344 | 1931688 | 1931951 | - | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 345 | 2829715 | 2830002 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 346 | 2290615 | 2290878 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 347 | 1928006 | 1928332 | - | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 348 | 6043335 | 6043622 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 349 | 3315918 | 3316208 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 350 | 353092 | 353379 | + | NZ_LR134442.1 | Propionibacterium australiense |
| 351 | 3654883 | 3655170 | - | NZ_CP015449.1 | Dietzia lutea |
| 352 | 5507771 | 5508061 | - | NZ_CP045309.1 | Micromonospora terminaliae |
| 353 | 3057456 | 3057746 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 354 | 3400659 | 3400946 | - | NZ_CP033325.1 | Georgenia faecalis |
| 355 | 2487877 | 2488173 | - | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 356 | 1142663 | 1142944 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 357 | 860137 | 860418 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 358 | 2529699 | 2529986 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 359 | 4319141 | 4319422 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 360 | 7158374 | 7158664 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 361 | 5071442 | 5071723 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 362 | 2202117 | 2202404 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 363 | 2657270 | 2657560 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 364 | 2668365 | 2668655 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 365 | 2698302 | 2698589 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 366 | 4264585 | 4264896 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 367 | 7047957 | 7048253 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 368 | 6987123 | 6987413 | - | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 369 | 3564099 | 3564380 | - | NZ_CP033972.1 | Gordonia insulae |
| 370 | 8244572 | 8244862 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 371 | 11697142 | 11697450 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 372 | 307038 | 307310 | + | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 373 | 6529595 | 6529891 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 374 | 8733771 | 8734061 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 375 | 1681247 | 1681537 | + | NZ_CP014635.1 | Corynebacterium simulans |
| 376 | 631206 | 631493 | + | NZ_LR134352.1 | Nocardia asteroides |
| 377 | 2646728 | 2647018 | - | NZ_CP009249.1 | Corynebacterium phocae |
| 378 | 2730983 | 2731270 | - | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 379 | 5143235 | 5143525 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 380 | 3517587 | 3517874 | - | NZ_CP015961.1 | Dietzia timorensis |
| 381 | 7157450 | 7157737 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 382 | 1459373 | 1459609 | - | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 383 | 2442884 | 2443171 | - | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 384 | 9332648 | 9332938 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 385 | 239139 | 239429 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 386 | 2939240 | 2939527 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 387 | 3005746 | 3006033 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 388 | 898304 | 898591 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 389 | 2275096 | 2275383 | - | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 390 | 2606209 | 2606496 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 391 | 3002072 | 3002359 | - | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 392 | 2726669 | 2726956 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 393 | 2830640 | 2830927 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 394 | 2719657 | 2719947 | - | NZ_CP010827.1 | Corynebacterium singulare |
| 395 | 129434 | 129724 | + | NZ_LS483460.1 | Corynebacterium minutissimum |
| 396 | 2620763 | 2621053 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 397 | 2533932 | 2534201 | + | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 398 | 2640235 | 2640522 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 399 | 3391589 | 3391876 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 400 | 1404267 | 1404536 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 401 | 1487003 | 1487272 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 402 | 2347890 | 2348177 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 403 | 2439936 | 2440223 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 404 | 1503994 | 1504284 | - | NZ_CP008802.1 | Actinotignum schaalii |
| 405 | 254627 | 254914 | + | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 406 | 2477703 | 2477990 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 407 | 310124 | 310390 | + | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 408 | 278107 | 278373 | + | NZ_CP026999.1 | Bifidobacterium longum |
| 409 | 106254 | 106526 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 410 | 8758344 | 8758652 | - | NC_014666.1 | Frankia inefficax |
| 411 | 2677932 | 2678222 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 412 | 2375601 | 2375891 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 413 | 1108889 | 1109176 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 414 | 831365 | 831652 | + | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 415 | 765365 | 765652 | - | NZ_LS483464.1 | Corynebacterium renale |
| 416 | 5396331 | 5396633 | - | NC_007777.1 | Frankia casuarinae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR026975.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03948.16 | 1.0 | 416 | 959.0 | same-strand | Ribosomal protein L9, C-terminal domain |
| 2 | PF01281.21 | 1.0 | 416 | 959.0 | same-strand | Ribosomal protein L9, N-terminal domain |
| 3 | PF01084.22 | 0.84 | 351 | 712 | same-strand | Ribosomal protein S18 |
| 4 | PF00436.27 | 1.0 | 415 | 78 | same-strand | Single-strand binding protein family |
| 5 | PF03796.17 | 0.68 | 283 | 2094 | same-strand | DnaB-like helicase C terminal domain |
| 6 | PF00772.23 | 0.68 | 283 | 2094 | same-strand | DnaB-like helicase N terminal domain |
| 7 | PF09594.12 | 0.61 | 252 | 1680.0 | same-strand | Glycosyltransferase family 87 |
| 8 | PF00912.24 | 0.71 | 294 | 2396 | same-strand | Transglycosylase |
| 9 | PF00905.24 | 0.6 | 251 | 2059.0 | same-strand | Penicillin binding protein transpeptidase domain |
++ More..