Result : Q67JW1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | AP006840.1 |
| Organism | Symbiobacterium thermophilum (strain T / IAM 14863) |
| Left | 3266622 |
| Right | 3266804 |
| Strand | - |
| Nucleotide Sequence | GTGGCTGGTACGCTGAAGATCACCCTCAAGAAGGGTCTGGCCGGCAGGGACCAGCGGATCATCGCCACTTTGAAGTCCCTGGGCCTGACCAAGCTCAACAAGACGGTGGAGCGGCCCGACAACCCCGCCGTGCGCGGCATGATCGCCCGCGTGGCGCACATGGTCGAGGTGCAGGAGGGGTAG |
| Sequence | MAGTLKITLKKGLAGRDQRIIATLKSLGLTKLNKTVERPDNPAVRGMIARVAHMVEVQEG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 15383646 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q67JW1 |
| ORF Length (Amino Acid) | 60 |
++ More..
| Conservation Analysis |
No. of Species: 380
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3266622 | 3266804 | - | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 2 | 340756 | 340938 | + | NZ_LN879430.1 | Herbinix luporum |
| 3 | 165037 | 165225 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 4 | 2373058 | 2373240 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 5 | 569087 | 569263 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 6 | 1748359 | 1748541 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 7 | 1201845 | 1202027 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 8 | 475310 | 475498 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 9 | 1162084 | 1162266 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 10 | 145723 | 145905 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 11 | 3104344 | 3104523 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 12 | 146889 | 147071 | + | NZ_CP012024.1 | Bacillus smithii |
| 13 | 2693372 | 2693551 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 14 | 821271 | 821456 | - | NC_010003.1 | Petrotoga mobilis SJ95 |
| 15 | 222176 | 222334 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 16 | 4039760 | 4039942 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 17 | 750939 | 751085 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 18 | 861320 | 861499 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 19 | 149576 | 149758 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 20 | 1295066 | 1295248 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 21 | 814557 | 814742 | + | NC_002967.9 | Treponema denticola ATCC 35405 |
| 22 | 789546 | 789734 | + | NC_013525.1 | Thermobaculum terrenum ATCC BAA-798 |
| 23 | 136607 | 136789 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 24 | 983702 | 983878 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 25 | 2065163 | 2065345 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 26 | 5609639 | 5609821 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 27 | 52682 | 52870 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 28 | 188146 | 188334 | + | NZ_CP034118.1 | Staphylospora marina |
| 29 | 3985377 | 3985565 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 30 | 705833 | 705994 | + | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 31 | 139123 | 139305 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 32 | 341987 | 342175 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 33 | 261205 | 261375 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 34 | 2510859 | 2511041 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 35 | 4056304 | 4056486 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 36 | 2581613 | 2581795 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 37 | 154821 | 155003 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 38 | 1289911 | 1290096 | - | NC_013203.1 | Lancefieldella parvulum DSM 20469 |
| 39 | 3272629 | 3272817 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 40 | 136506 | 136688 | + | NZ_LS483476.1 | Lederbergia lentus |
| 41 | 3090617 | 3090805 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 42 | 2419603 | 2419761 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 43 | 1755707 | 1755895 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 44 | 2258615 | 2258794 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 45 | 509591 | 509773 | + | NZ_CP030280.1 | Blautia argi |
| 46 | 2069985 | 2070164 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 47 | 4437215 | 4437394 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 48 | 2741311 | 2741493 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 49 | 3239868 | 3240050 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 50 | 372653 | 372835 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 51 | 2330339 | 2330527 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 52 | 275396 | 275572 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 53 | 3729197 | 3729367 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 54 | 2148594 | 2148773 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 55 | 2432176 | 2432358 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 56 | 4586069 | 4586257 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 57 | 2348032 | 2348202 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 58 | 155208 | 155390 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 59 | 5695114 | 5695290 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 60 | 70590 | 70769 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 61 | 77697 | 77876 | + | NZ_CP065211.1 | Enterococcus lactis |
| 62 | 74995 | 75174 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 63 | 115255 | 115434 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 64 | 44229 | 44417 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 65 | 1648599 | 1648778 | - | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 66 | 1484503 | 1484685 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 67 | 117153 | 117335 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 68 | 1401569 | 1401751 | - | NZ_CP043404.1 | Bacillus safensis |
| 69 | 258444 | 258626 | + | NZ_CP053989.1 | Niallia circulans |
| 70 | 128127 | 128315 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 71 | 1938123 | 1938305 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 72 | 1771625 | 1771804 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 73 | 581987 | 582166 | - | NZ_CP023011.2 | Enterococcus hirae |
| 74 | 3165955 | 3166134 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 75 | 749933 | 750115 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 76 | 375783 | 375968 | - | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 77 | 259569 | 259757 | + | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 78 | 136265 | 136453 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 79 | 1621222 | 1621404 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 80 | 156871 | 157056 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 81 | 3070552 | 3070737 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 82 | 4395140 | 4395292 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 83 | 318917 | 319102 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 84 | 2795200 | 2795373 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 85 | 8369531 | 8369719 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 86 | 2592523 | 2592702 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 87 | 2718408 | 2718587 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 88 | 2697267 | 2697446 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 89 | 387160 | 387339 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 90 | 770131 | 770289 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 91 | 5085641 | 5085823 | - | NZ_CP039126.1 | Blautia producta |
| 92 | 281413 | 281589 | - | NZ_CP026363.1 | Brevibacillus agri |
| 93 | 2602841 | 2603020 | - | NZ_LT906444.1 | Listeria welshimeri |
| 94 | 243739 | 243918 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 95 | 4743980 | 4744162 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 96 | 1281141 | 1281323 | + | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 97 | 275023 | 275169 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 98 | 6385139 | 6385324 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 99 | 5013225 | 5013377 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 100 | 208515 | 208694 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 101 | 248260 | 248448 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 102 | 1671666 | 1671815 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 103 | 2126015 | 2126203 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 104 | 3194240 | 3194422 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 105 | 777276 | 777428 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 106 | 1214386 | 1214583 | + | NZ_CP061799.1 | Desulfonema limicola |
| 107 | 5290675 | 5290851 | - | NZ_CP009288.1 | Paenibacillus durus |
| 108 | 874853 | 875029 | + | NZ_LT632322.1 | Murdochiella vaginalis |
| 109 | 2692213 | 2692398 | - | NC_015500.1 | Treponema brennaborense DSM 12168 |
| 110 | 4492886 | 4493068 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 111 | 251661 | 251843 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 112 | 2690845 | 2691027 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 113 | 1712244 | 1712423 | + | NZ_CP026364.1 | Proteus hauseri |
| 114 | 142885 | 143064 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 115 | 937109 | 937297 | - | NC_011959.1 | Thermomicrobium roseum DSM 5159 |
| 116 | 3590954 | 3591133 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 117 | 141985 | 142164 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 118 | 150452 | 150634 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 119 | 644026 | 644211 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 120 | 3477722 | 3477901 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 121 | 3524361 | 3524540 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 122 | 4582637 | 4582816 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 123 | 3990898 | 3991050 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 124 | 274206 | 274385 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 125 | 1688848 | 1689033 | - | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 126 | 761651 | 761809 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 127 | 3615911 | 3616060 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 128 | 570167 | 570349 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 129 | 150178 | 150360 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 130 | 4683609 | 4683794 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 131 | 1540017 | 1540196 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 132 | 702917 | 703066 | + | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 133 | 2174896 | 2175054 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 134 | 614769 | 614948 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 135 | 431649 | 431828 | + | NZ_CP014164.1 | Aerococcus viridans |
| 136 | 392334 | 392513 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 137 | 412266 | 412448 | + | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 138 | 1445578 | 1445757 | - | NC_022538.1 | Acholeplasma palmae J233 |
| 139 | 1106830 | 1107003 | + | NZ_CP029684.2 | Oenococcus sicerae |
| 140 | 499940 | 500095 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 141 | 368886 | 369071 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 142 | 3227943 | 3228131 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 143 | 2362741 | 2362929 | + | NZ_CP031092.1 | Salicibibacter kimchii |
| 144 | 867785 | 867970 | - | NC_016751.1 | Marinitoga piezophila KA3 |
| 145 | 2829833 | 2830021 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 146 | 2259992 | 2260180 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 147 | 2252277 | 2252462 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 148 | 3262890 | 3263063 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 149 | 3134440 | 3134619 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 150 | 136181 | 136369 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 151 | 136966 | 137154 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 152 | 6275615 | 6275791 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 153 | 463655 | 463834 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 154 | 2018365 | 2018544 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 155 | 291326 | 291505 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 156 | 3474338 | 3474517 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 157 | 1412835 | 1413014 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 158 | 5005153 | 5005332 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 159 | 2814396 | 2814566 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 160 | 2454051 | 2454230 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 161 | 1682748 | 1682933 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 162 | 471396 | 471545 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 163 | 2849354 | 2849530 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 164 | 2615975 | 2616151 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 165 | 284313 | 284489 | + | NZ_CP030788.1 | Vibrio campbellii |
| 166 | 2992097 | 2992273 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 167 | 2818486 | 2818662 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 168 | 1539795 | 1539971 | - | NZ_CP019959.1 | Vibrio owensii |
| 169 | 1952275 | 1952451 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 170 | 2274087 | 2274263 | - | NZ_CP035688.1 | Vibrio metoecus |
| 171 | 2175483 | 2175659 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 172 | 2616333 | 2616509 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 173 | 2712890 | 2713066 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 174 | 3100348 | 3100524 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 175 | 2698216 | 2698392 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 176 | 3188309 | 3188485 | + | NZ_AP019657.1 | Vibrio ponticus |
| 177 | 117310 | 117486 | - | NZ_CP040990.1 | Vibrio furnissii |
| 178 | 996273 | 996452 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 179 | 1988034 | 1988219 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 180 | 903175 | 903354 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 181 | 1896028 | 1896213 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 182 | 113452 | 113631 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 183 | 832025 | 832204 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 184 | 323222 | 323401 | + | NZ_CP065534.1 | Lonsdalea populi |
| 185 | 742974 | 743153 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 186 | 409518 | 409697 | + | NZ_CP061511.1 | Mixta calida |
| 187 | 481113 | 481292 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 188 | 4039416 | 4039595 | - | NZ_LT615367.1 | Dickeya aquatica |
| 189 | 484136 | 484315 | + | NZ_CP026377.1 | Mixta gaviniae |
| 190 | 399884 | 400063 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 191 | 396214 | 396393 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 192 | 4251178 | 4251357 | - | NZ_CP050150.1 | Hafnia alvei |
| 193 | 4233100 | 4233279 | + | NZ_CP028271.1 | Mixta intestinalis |
| 194 | 4183222 | 4183401 | - | NZ_CP025799.1 | Dickeya zeae |
| 195 | 244818 | 244997 | + | NZ_LR134201.1 | Cedecea lapagei |
| 196 | 384381 | 384560 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 197 | 493264 | 493443 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 198 | 4383129 | 4383308 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 199 | 3322812 | 3322991 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 200 | 240296 | 240475 | + | NZ_CP023525.1 | Cedecea neteri |
| 201 | 4805041 | 4805220 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 202 | 2529554 | 2529733 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 203 | 3606461 | 3606640 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 204 | 464954 | 465133 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 205 | 475060 | 475239 | + | NZ_CP038853.1 | Pantoea vagans |
| 206 | 2442153 | 2442332 | - | NZ_CP049115.1 | Pantoea stewartii |
| 207 | 4933100 | 4933279 | - | NZ_LR134494.1 | Serratia quinivorans |
| 208 | 2586326 | 2586505 | - | NZ_CP009787.1 | Yersinia rohdei |
| 209 | 3011464 | 3011643 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 210 | 1572057 | 1572236 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 211 | 315790 | 315969 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 212 | 4360559 | 4360738 | - | NZ_CP043727.1 | Yersinia canariae |
| 213 | 340408 | 340587 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 214 | 4374649 | 4374828 | - | NZ_CP032487.1 | Yersinia hibernica |
| 215 | 1260267 | 1260446 | - | NZ_CP007230.1 | Yersinia similis |
| 216 | 144837 | 145016 | + | NZ_CP046293.1 | Yersinia intermedia |
| 217 | 492014 | 492190 | + | NZ_CP009467.1 | Vibrio harveyi |
| 218 | 259283 | 259459 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 219 | 2327506 | 2327688 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 220 | 1987262 | 1987441 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 221 | 1528423 | 1528575 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 222 | 668943 | 669095 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 223 | 487238 | 487417 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 224 | 3482446 | 3482625 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 225 | 3326767 | 3326946 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 226 | 4058544 | 4058723 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 227 | 3161782 | 3161961 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 228 | 4098451 | 4098630 | - | NZ_LS483422.1 | Providencia heimbachae |
| 229 | 4188415 | 4188594 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 230 | 3157313 | 3157492 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 231 | 1197969 | 1198148 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 232 | 156934 | 157113 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 233 | 4036668 | 4036847 | + | NZ_CP067057.1 | Rahnella aceris |
| 234 | 1111406 | 1111585 | - | NZ_CP065640.1 | Serratia rubidaea |
| 235 | 2907150 | 2907329 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 236 | 407156 | 407335 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 237 | 1314883 | 1315056 | - | NZ_LT635480.1 | Ndongobacter massiliensis |
| 238 | 274908 | 275066 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 239 | 945011 | 945193 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 240 | 329710 | 329892 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 241 | 112084 | 112263 | + | NZ_CP015581.1 | Tatumella citrea |
| 242 | 3820690 | 3820872 | - | NZ_CP016210.1 | Azoarcus olearius |
| 243 | 1696887 | 1697054 | - | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 244 | 4092862 | 4093041 | - | NZ_CP048796.1 | Providencia vermicola |
| 245 | 978104 | 978283 | + | NZ_CP029736.1 | Providencia rettgeri |
| 246 | 3560629 | 3560808 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 247 | 1508290 | 1508472 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 248 | 380363 | 380542 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 249 | 3947732 | 3947911 | - | NZ_LR134340.1 | Escherichia marmotae |
| 250 | 2365834 | 2366013 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 251 | 3428926 | 3429105 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 252 | 3444543 | 3444722 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 253 | 3420550 | 3420729 | - | NZ_AP014857.1 | Escherichia albertii |
| 254 | 4746255 | 4746440 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 255 | 2099843 | 2100028 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 256 | 4179683 | 4179862 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 257 | 5276141 | 5276305 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 258 | 312932 | 313111 | + | NZ_LR134531.1 | Pragia fontium |
| 259 | 3780342 | 3780521 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 260 | 4139631 | 4139810 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 261 | 4889127 | 4889306 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 262 | 1390212 | 1390391 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 263 | 1311214 | 1311393 | - | NZ_CP011254.1 | Serratia fonticola |
| 264 | 431285 | 431473 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 265 | 179085 | 179273 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 266 | 218955 | 219140 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 267 | 2015636 | 2015824 | - | NC_012785.1 | Kosmotoga olearia TBF 19.5.1 |
| 268 | 3803608 | 3803787 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 269 | 230864 | 231043 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 270 | 3882890 | 3883069 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 271 | 3960245 | 3960424 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 272 | 84846 | 85025 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 273 | 4050134 | 4050313 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 274 | 1437942 | 1438121 | - | NZ_CP053416.1 | Salmonella bongori |
| 275 | 412271 | 412450 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 276 | 4172192 | 4172371 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 277 | 4342912 | 4343091 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 278 | 3834510 | 3834689 | + | NZ_CP038469.1 | Citrobacter tructae |
| 279 | 3587811 | 3587990 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 280 | 2689127 | 2689306 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 281 | 4439188 | 4439367 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 282 | 2836125 | 2836304 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 283 | 2246569 | 2246748 | - | NZ_CP033744.1 | Citrobacter freundii |
| 284 | 3565553 | 3565732 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 285 | 1661410 | 1661589 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 286 | 707841 | 708020 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 287 | 432689 | 432868 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 288 | 428885 | 429064 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 289 | 429454 | 429633 | + | NZ_CP041247.1 | Raoultella electrica |
| 290 | 4862168 | 4862347 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 291 | 4765730 | 4765909 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 292 | 1186314 | 1186493 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 293 | 457892 | 458071 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 294 | 985265 | 985444 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 295 | 20976 | 21155 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 296 | 1248791 | 1248970 | - | NZ_CP026047.1 | Raoultella planticola |
| 297 | 5146194 | 5146373 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 298 | 438420 | 438599 | + | NZ_CP054254.1 | Klebsiella variicola |
| 299 | 467793 | 467972 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 300 | 431020 | 431199 | + | NZ_CP050508.1 | Raoultella terrigena |
| 301 | 4866169 | 4866348 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 302 | 511571 | 511750 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 303 | 550716 | 550895 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 304 | 351366 | 351542 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 305 | 176439 | 176621 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 306 | 187746 | 187928 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 307 | 2278968 | 2279144 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 308 | 411596 | 411781 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 309 | 1168559 | 1168705 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 310 | 1689836 | 1689982 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 311 | 2989644 | 2989823 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 312 | 2021109 | 2021288 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 313 | 4195270 | 4195449 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 314 | 4269257 | 4269436 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 315 | 4288193 | 4288372 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 316 | 453694 | 453873 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 317 | 4302660 | 4302839 | - | NC_015968.1 | Enterobacter soli |
| 318 | 3011452 | 3011631 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 319 | 4392204 | 4392383 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 320 | 2850754 | 2850933 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 321 | 4058530 | 4058709 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 322 | 4624310 | 4624489 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 323 | 94504 | 94665 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 324 | 6124320 | 6124466 | - | NZ_AP019400.1 | Cohnella abietis |
| 325 | 887164 | 887322 | - | NZ_CP008802.1 | Actinotignum schaalii |
| 326 | 1755639 | 1755800 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 327 | 2029754 | 2029915 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 328 | 444137 | 444298 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 329 | 2472063 | 2472257 | - | NZ_LR134379.1 | Slackia heliotrinireducens |
| 330 | 2251723 | 2251902 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 331 | 5777349 | 5777555 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 332 | 754592 | 754780 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 333 | 1269202 | 1269390 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 334 | 2583965 | 2584147 | - | NZ_AP019309.1 | Intestinibaculum porci |
| 335 | 1633744 | 1633923 | - | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 336 | 55719 | 55904 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 337 | 6224054 | 6224215 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 338 | 259841 | 260020 | + | NZ_CP016786.1 | Clostridium isatidis |
| 339 | 1466461 | 1466616 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 340 | 2395764 | 2395946 | - | NZ_LR134406.1 | Arachnia propionica |
| 341 | 5016367 | 5016552 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 342 | 307487 | 307669 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 343 | 481339 | 481518 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 344 | 1795586 | 1795759 | + | NZ_CP021434.1 | Tumebacillus avium |
| 345 | 3582100 | 3582279 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 346 | 3925508 | 3925687 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 347 | 378559 | 378744 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 348 | 3814113 | 3814292 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 349 | 3752288 | 3752467 | - | NZ_CP008849.1 | Alteromonas australica |
| 350 | 2846107 | 2846265 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 351 | 4430792 | 4430974 | - | NZ_CP041036.1 | Shewanella polaris |
| 352 | 2812529 | 2812708 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 353 | 1290609 | 1290773 | - | NZ_LR134350.1 | Actinomyces howellii |
| 354 | 1717409 | 1717603 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 355 | 616173 | 616373 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 356 | 1516270 | 1516461 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 357 | 3274572 | 3274760 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 358 | 984117 | 984281 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 359 | 1139578 | 1139754 | + | NZ_CP042306.1 | Sphingomonas panacisoli |
| 360 | 607894 | 608040 | - | NZ_CP019607.1 | Tessaracoccus flavescens |
| 361 | 2762862 | 2763026 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 362 | 1710606 | 1710767 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 363 | 1774964 | 1775125 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 364 | 64695 | 64880 | + | NZ_CP036259.1 | Sporomusa termitida |
| 365 | 996951 | 997127 | + | NZ_CP007389.1 | Thermosipho melanesiensis |
| 366 | 1677812 | 1677994 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 367 | 1244016 | 1244201 | + | NC_011653.1 | Thermosipho africanus TCF52B |
| 368 | 2643640 | 2643786 | + | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 369 | 285545 | 285730 | + | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 370 | 1311757 | 1311951 | + | NZ_CP024199.1 | Thalassospira marina |
| 371 | 1311735 | 1311929 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 372 | 1907470 | 1907664 | + | NZ_CP031555.1 | Thalassospira indica |
| 373 | 1732240 | 1732404 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 374 | 572280 | 572444 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 375 | 442986 | 443171 | + | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 376 | 275992 | 276153 | + | NZ_CP007028.1 | Thermocrinis ruber |
| 377 | 1169214 | 1169399 | + | NC_008278.1 | Frankia alni ACN14a |
| 378 | 1979869 | 1980054 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 379 | 1968370 | 1968555 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 380 | 639863 | 640042 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 381 | 1650228 | 1650410 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_006177.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00344.22 | 0.98 | 373 | 461.0 | same-strand | SecY |
| 2 | PF00828.21 | 0.99 | 378 | 6 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 3 | PF03719.17 | 1.0 | 380 | 8 | same-strand | Ribosomal protein S5, C-terminal domain |
| 4 | PF00333.22 | 1.0 | 380 | 8 | same-strand | Ribosomal protein S5, N-terminal domain |
| 5 | PF00861.24 | 0.96 | 365 | 534.0 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 6 | PF00347.25 | 0.98 | 374 | 927 | same-strand | Ribosomal protein L6 |
| 7 | PF00410.21 | 1.0 | 379 | 1495.5 | same-strand | Ribosomal protein S8 |
| 8 | PF00253.23 | 0.87 | 332 | 1866 | same-strand | Ribosomal protein S14p/S29e |
++ More..