Result : A8LE17
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | CP000820.1 |
| Organism | Frankia sp. (strain EAN1pec) |
| Left | 2048984 |
| Right | 2049268 |
| Strand | + |
| Nucleotide Sequence | GTGTCCGGTACTGTCGCCCAGCCCGAGGGCATCACGAACCCGCCGATCGACGAGCTGCTCGAGGCCACCGACTCGAAGTACAGCCTCGTCATCTACGCGGCGAAGCGGGCCCGCCAGATCAACGCCTACTACTCCCAGCTCGGCGAGGGCCTGCTGGAGTACGTCGGCCCGCTGGTGGAGACGACCAGCGCCCAGGAGAAGCCGCTGTCGATCGCGCTCCGCGAGATCAACTCCGGTCTGCTCACGCACGAGACGATCACAGACCCGCTGCCGCCGATCTCCTGA |
| Sequence | MSGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALREINSGLLTHETITDPLPPIS |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | 17151343 |
| Domain | CDD:417484 |
| Functional Category | Others |
| Uniprot ID | A8LE17 |
| ORF Length (Amino Acid) | 94 |
++ More..
| Conservation Analysis |
No. of Species: 348
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5671094 | 5671378 | - | NC_008278.1 | Frankia alni ACN14a |
| 2 | 3786090 | 3786374 | - | NC_007777.1 | Frankia casuarinae |
| 3 | 2068166 | 2068450 | + | NC_014666.1 | Frankia inefficax |
| 4 | 1213049 | 1213321 | - | NZ_CP015866.1 | Streptomyces parvulus |
| 5 | 6653170 | 6653433 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 6 | 604320 | 604601 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 7 | 382806 | 383099 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 8 | 6675472 | 6675735 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 9 | 1771733 | 1772005 | - | NZ_CP027306.1 | Streptomyces atratus |
| 10 | 4971950 | 4972213 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 11 | 1260363 | 1260635 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 12 | 910033 | 910305 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 13 | 8334020 | 8334292 | + | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 14 | 1258722 | 1258994 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 15 | 1573218 | 1573490 | - | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 16 | 4712754 | 4713026 | - | NZ_CP030862.1 | Streptomyces globosus |
| 17 | 2062408 | 2062680 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 18 | 2507591 | 2507863 | - | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 19 | 6076215 | 6076475 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 20 | 759881 | 760153 | - | NZ_CP031194.1 | Streptomyces paludis |
| 21 | 6781375 | 6781650 | + | NZ_CP048882.1 | Streptomyces bathyalis |
| 22 | 1320494 | 1320766 | - | NZ_CP023407.1 | Streptomyces fungicidicus |
| 23 | 1435809 | 1436081 | - | NZ_CP063374.1 | Streptomyces chromofuscus |
| 24 | 1079839 | 1080111 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 25 | 1175281 | 1175553 | - | NZ_CP029043.1 | Streptomyces nigra |
| 26 | 1585306 | 1585578 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 27 | 6556846 | 6557118 | + | NZ_CP022310.1 | Streptomyces calvus |
| 28 | 6588798 | 6589070 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 29 | 1643189 | 1643461 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 30 | 7209781 | 7210053 | + | NZ_CP034687.1 | Streptomyces griseoviridis |
| 31 | 1687416 | 1687688 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 32 | 7114309 | 7114581 | + | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 33 | 7861107 | 7861379 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 34 | 2004025 | 2004297 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 35 | 8098503 | 8098775 | + | NZ_CP023689.1 | Streptomyces chartreusis |
| 36 | 3336467 | 3336739 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 37 | 1441371 | 1441640 | - | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 38 | 8323361 | 8323630 | + | NC_013929.1 | Streptomyces scabiei 87.22 |
| 39 | 1876140 | 1876412 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 40 | 6039819 | 6040091 | + | NZ_CP023692.1 | Streptomyces vinaceus |
| 41 | 1409498 | 1409770 | - | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 42 | 2265924 | 2266196 | - | NZ_CP071139.1 | Streptomyces nojiriensis |
| 43 | 453853 | 454116 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 44 | 6999626 | 6999898 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 45 | 1203282 | 1203554 | - | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 46 | 7078195 | 7078467 | + | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 47 | 6148698 | 6148970 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 48 | 1471687 | 1471959 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 49 | 1189618 | 1189890 | - | NZ_CP029196.1 | Streptomyces venezuelae |
| 50 | 1820135 | 1820404 | - | NC_021985.1 | Streptomyces collinus Tu 365 |
| 51 | 1666198 | 1666470 | - | NZ_CP023691.1 | Streptomyces platensis |
| 52 | 7053775 | 7054047 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 53 | 6885795 | 6886067 | + | NZ_CP051006.1 | Streptomyces griseofuscus |
| 54 | 1566862 | 1567134 | - | NZ_CP010407.1 | Streptomyces vietnamensis |
| 55 | 7816702 | 7816974 | + | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 56 | 1590241 | 1590513 | - | NZ_CP022685.1 | Streptomyces formicae |
| 57 | 2423429 | 2423704 | - | NZ_CP070326.1 | Streptomyces noursei |
| 58 | 998720 | 998992 | - | NZ_CP070242.1 | Streptomyces californicus |
| 59 | 987243 | 987515 | - | NZ_CP020570.1 | Streptomyces violaceoruber |
| 60 | 925977 | 926249 | - | NZ_CP020563.1 | Kitasatospora albolonga |
| 61 | 5294523 | 5294795 | - | NZ_CP051486.1 | Streptomyces pratensis |
| 62 | 1278826 | 1279098 | - | NZ_CP023695.1 | Streptomyces alboniger |
| 63 | 1080051 | 1080323 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 64 | 1644037 | 1644309 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 65 | 7549920 | 7550192 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 66 | 1282898 | 1283170 | - | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 67 | 2166768 | 2167040 | - | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 68 | 1134269 | 1134532 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 69 | 6099625 | 6099897 | + | NZ_CP023701.1 | Streptomyces subrutilus |
| 70 | 868956 | 869228 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 71 | 893517 | 893789 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 72 | 7254613 | 7254885 | + | NZ_CP026652.1 | Streptomyces dengpaensis |
| 73 | 1851706 | 1851978 | - | NZ_CP071839.1 | Streptomyces cyanogenus |
| 74 | 7809232 | 7809504 | + | NZ_CP023688.1 | Streptomyces rimosus |
| 75 | 7904618 | 7904890 | + | NZ_CP017248.1 | Streptomyces fodineus |
| 76 | 2171476 | 2171748 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 77 | 2162567 | 2162839 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 78 | 7852162 | 7852434 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 79 | 1623371 | 1623643 | - | NZ_CP059991.1 | Streptomyces gardneri |
| 80 | 1136784 | 1137056 | - | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 81 | 1780007 | 1780279 | - | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 82 | 5964617 | 5964889 | + | NZ_CP065253.1 | Streptomyces clavuligerus |
| 83 | 962433 | 962705 | - | NZ_CP021080.1 | Streptomyces pluripotens |
| 84 | 6680504 | 6680773 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 85 | 914258 | 914530 | - | NZ_CP024957.1 | Streptomyces cavourensis |
| 86 | 3192806 | 3193078 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 87 | 2323532 | 2323804 | + | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 88 | 6388143 | 6388421 | + | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 89 | 8200837 | 8201109 | + | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 90 | 6077155 | 6077427 | + | NC_020990.1 | Streptomyces albidoflavus |
| 91 | 6441050 | 6441322 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 92 | 1232601 | 1232873 | - | NZ_CP020700.1 | Streptomyces tsukubensis |
| 93 | 8822604 | 8822876 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 94 | 6544076 | 6544348 | + | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 95 | 1539488 | 1539754 | - | NC_016109.1 | Kitasatospora setae KM-6054 |
| 96 | 6136239 | 6136505 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 97 | 2586111 | 2586383 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 98 | 4011583 | 4011849 | + | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 99 | 2644536 | 2644808 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 100 | 1410977 | 1411249 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 101 | 1056741 | 1057019 | - | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 102 | 5761052 | 5761318 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 103 | 2486976 | 2487242 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 104 | 1442089 | 1442352 | - | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 105 | 2573797 | 2574075 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 106 | 3129237 | 3129503 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 107 | 2129512 | 2129778 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 108 | 207682 | 207942 | - | NZ_CP047156.1 | Epidermidibacterium keratini |
| 109 | 3280788 | 3281051 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 110 | 1078665 | 1078961 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 111 | 1917881 | 1918147 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 112 | 2181546 | 2181809 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 113 | 2011904 | 2012188 | + | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 114 | 2064204 | 2064470 | + | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 115 | 3336119 | 3336439 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 116 | 1637443 | 1637706 | + | NZ_CP051884.1 | Cellulomonas taurus |
| 117 | 1442141 | 1442404 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 118 | 1822017 | 1822280 | + | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 119 | 4027461 | 4027754 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 120 | 2060888 | 2061190 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 121 | 6159923 | 6160204 | - | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 122 | 1899708 | 1899971 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 123 | 1859021 | 1859314 | + | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 124 | 2593594 | 2593860 | + | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 125 | 3948334 | 3948603 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 126 | 2106278 | 2106583 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 127 | 2040377 | 2040670 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 128 | 2041371 | 2041679 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 129 | 2926797 | 2927060 | + | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 130 | 1916783 | 1917052 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 131 | 3055398 | 3055661 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 132 | 3508642 | 3508953 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 133 | 1539926 | 1540192 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 134 | 2188359 | 2188622 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 135 | 230680 | 230949 | + | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 136 | 2285901 | 2286194 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 137 | 1835979 | 1836248 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 138 | 2070638 | 2070904 | - | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 139 | 165384 | 165689 | + | NZ_CP043661.1 | Kribbella qitaiheensis |
| 140 | 3493175 | 3493429 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 141 | 4671941 | 4672255 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 142 | 6148060 | 6148338 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 143 | 6233884 | 6234162 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 144 | 8134075 | 8134356 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 145 | 8678160 | 8678438 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 146 | 3759659 | 3759931 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 147 | 7050542 | 7050820 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 148 | 9676772 | 9677050 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 149 | 3840625 | 3840891 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 150 | 3041412 | 3041699 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 151 | 4133983 | 4134246 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 152 | 4055896 | 4056177 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 153 | 2329960 | 2330229 | - | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 154 | 1565138 | 1565425 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 155 | 1588479 | 1588766 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 156 | 2478115 | 2478396 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 157 | 4276590 | 4276865 | - | NZ_CP016353.1 | Prauserella marina |
| 158 | 906490 | 906765 | + | NZ_CP033972.1 | Gordonia insulae |
| 159 | 2157733 | 2158020 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 160 | 448608 | 448907 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 161 | 1605429 | 1605704 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 162 | 3304551 | 3304817 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 163 | 2997728 | 2997982 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 164 | 2672919 | 2673206 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 165 | 3827382 | 3827657 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 166 | 4940716 | 4940991 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 167 | 2497640 | 2497924 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 168 | 2064670 | 2064906 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 169 | 2262445 | 2262681 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 170 | 5271284 | 5271565 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 171 | 3859606 | 3859920 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 172 | 623583 | 623864 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 173 | 2024720 | 2024956 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 174 | 1640120 | 1640407 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 175 | 340061 | 340297 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 176 | 2098190 | 2098441 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 177 | 5248293 | 5248568 | - | NZ_LR134352.1 | Nocardia asteroides |
| 178 | 4287052 | 4287309 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 179 | 400944 | 401210 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 180 | 1829189 | 1829476 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 181 | 2841459 | 2841695 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 182 | 3281512 | 3281769 | + | NZ_AP023396.1 | Nocardia wallacei |
| 183 | 1883309 | 1883569 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 184 | 2412018 | 2412305 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 185 | 3402443 | 3402721 | + | NZ_AP017900.1 | Nocardia seriolae |
| 186 | 3897114 | 3897380 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 187 | 3346106 | 3346393 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 188 | 2397161 | 2397448 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 189 | 3986165 | 3986452 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 190 | 3746649 | 3746942 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 191 | 5238519 | 5238806 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 192 | 2495758 | 2496033 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 193 | 4462872 | 4463186 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 194 | 1154368 | 1154655 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 195 | 715360 | 715653 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 196 | 1323278 | 1323511 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 197 | 1327321 | 1327557 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 198 | 1260225 | 1260461 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 199 | 639049 | 639336 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 200 | 1276841 | 1277077 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 201 | 670086 | 670367 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 202 | 1032857 | 1033153 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 203 | 2821094 | 2821330 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 204 | 1024867 | 1025160 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 205 | 2257045 | 2257341 | + | NZ_CP027433.1 | Gordonia iterans |
| 206 | 599504 | 599815 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 207 | 750245 | 750529 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 208 | 4782379 | 4782615 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 209 | 2654252 | 2654530 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 210 | 3875689 | 3875985 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 211 | 3935850 | 3936110 | + | NZ_AP022562.1 | Mycobacterium novum |
| 212 | 2510606 | 2510866 | - | NC_015576.1 | Mycolicibacter sinensis |
| 213 | 1202178 | 1202426 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 214 | 1803019 | 1803282 | - | NZ_CP033325.1 | Georgenia faecalis |
| 215 | 2702225 | 2702518 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 216 | 1651645 | 1651914 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 217 | 3919461 | 3919739 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 218 | 2599502 | 2599738 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 219 | 3189015 | 3189251 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 220 | 1029824 | 1030102 | + | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 221 | 269686 | 269979 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 222 | 4115702 | 4115938 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 223 | 4791999 | 4792280 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 224 | 6191363 | 6191641 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 225 | 2412774 | 2413034 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 226 | 1354066 | 1354314 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 227 | 1146161 | 1146445 | + | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 228 | 1353438 | 1353707 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 229 | 1323268 | 1323537 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 230 | 1718131 | 1718400 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 231 | 886382 | 886669 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 232 | 1698316 | 1698597 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 233 | 2479592 | 2479852 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 234 | 4215220 | 4215480 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 235 | 5869 | 6129 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 236 | 1421423 | 1421701 | - | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 237 | 2685246 | 2685542 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 238 | 2406353 | 2406589 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 239 | 281505 | 281762 | + | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 240 | 1930654 | 1930911 | - | NZ_CP013745.1 | Arthrobacter alpinus |
| 241 | 2731159 | 2731437 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 242 | 1410641 | 1410925 | + | NZ_CP018044.1 | Bifidobacterium choerinum |
| 243 | 2333489 | 2333773 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 244 | 336807 | 337085 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 245 | 2925225 | 2925476 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 246 | 683510 | 683794 | + | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 247 | 511165 | 511413 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 248 | 3448605 | 3448847 | - | NZ_CP022752.1 | Actinopolyspora erythraea |
| 249 | 1454918 | 1455202 | - | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 250 | 1829972 | 1830238 | - | NZ_CP011542.1 | Corynebacterium mustelae |
| 251 | 1291479 | 1291739 | + | NZ_CP009249.1 | Corynebacterium phocae |
| 252 | 2675327 | 2675578 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 253 | 1341524 | 1341790 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 254 | 1601175 | 1601432 | - | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 255 | 2548105 | 2548341 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 256 | 1229844 | 1230122 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 257 | 811422 | 811706 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 258 | 1346966 | 1347217 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 259 | 1934397 | 1934627 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 260 | 1961958 | 1962242 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 261 | 858111 | 858395 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 262 | 1174567 | 1174851 | - | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 263 | 1195080 | 1195364 | - | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 264 | 1619994 | 1620227 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 265 | 1818216 | 1818449 | - | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 266 | 1832616 | 1832849 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 267 | 1638367 | 1638600 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 268 | 568362 | 568661 | + | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 269 | 1649712 | 1649945 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 270 | 1482004 | 1482255 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 271 | 1307986 | 1308279 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 272 | 665032 | 665316 | + | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 273 | 731897 | 732181 | + | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 274 | 313864 | 314100 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 275 | 1443075 | 1443368 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 276 | 1945863 | 1946123 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 277 | 1545159 | 1545455 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 278 | 1471848 | 1472105 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 279 | 1386958 | 1387239 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 280 | 1866178 | 1866438 | - | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 281 | 1311179 | 1311445 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 282 | 1629965 | 1630249 | + | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 283 | 610828 | 611088 | - | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 284 | 64262 | 64543 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 285 | 1045952 | 1046203 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 286 | 1381502 | 1381789 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 287 | 1550800 | 1551051 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 288 | 1369072 | 1369365 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 289 | 1491206 | 1491472 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 290 | 1736177 | 1736461 | + | NZ_CP026999.1 | Bifidobacterium longum |
| 291 | 1586665 | 1586943 | - | NZ_CP033896.1 | Corynebacterium choanae |
| 292 | 468435 | 468716 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 293 | 1120839 | 1121087 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 294 | 723037 | 723312 | + | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 295 | 721814 | 722080 | + | NZ_CP066065.1 | Schaalia meyeri |
| 296 | 1869744 | 1869977 | - | NZ_CP015961.1 | Dietzia timorensis |
| 297 | 80591 | 80884 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 298 | 1446471 | 1446764 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 299 | 1118153 | 1118401 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 300 | 1348333 | 1348575 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 301 | 1118800 | 1119048 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 302 | 2073365 | 2073646 | - | NZ_LS483464.1 | Corynebacterium renale |
| 303 | 1173705 | 1173977 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 304 | 1389504 | 1389755 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 305 | 1497647 | 1497955 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 306 | 1133614 | 1133898 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 307 | 1531368 | 1531655 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 308 | 1081601 | 1081876 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 309 | 1262640 | 1262888 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 310 | 577234 | 577518 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 311 | 1058887 | 1059177 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 312 | 1787022 | 1787294 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 313 | 1079221 | 1079475 | - | NZ_CP026923.1 | Pontimonas salivibrio |
| 314 | 1037892 | 1038173 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 315 | 1214837 | 1215118 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 316 | 2084065 | 2084322 | - | NZ_CP016282.1 | Cryobacterium arcticum |
| 317 | 194559 | 194816 | + | NZ_CP030033.1 | Cryobacterium soli |
| 318 | 1587137 | 1587397 | - | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 319 | 1251574 | 1251861 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 320 | 1711002 | 1711268 | + | NZ_CP047180.1 | Rathayibacter festucae |
| 321 | 2118689 | 2118952 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 322 | 2226266 | 2226523 | + | NZ_CP017146.1 | Marisediminicola antarctica |
| 323 | 1571684 | 1571938 | - | NZ_CP064760.1 | Microbacterium schleiferi |
| 324 | 1279652 | 1279909 | + | NZ_CP058670.1 | Chryseoglobus indicus |
| 325 | 2772196 | 2772450 | - | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 326 | 503241 | 503510 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 327 | 1989457 | 1989726 | - | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 328 | 1339048 | 1339314 | + | NZ_CP049933.1 | Leucobacter coleopterorum |
| 329 | 1546846 | 1547103 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 330 | 1098690 | 1098944 | + | NZ_CP028129.1 | Rathayibacter rathayi |
| 331 | 3280885 | 3281178 | + | NZ_CP035806.1 | Leucobacter triazinivorans |
| 332 | 1760088 | 1760342 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 333 | 1789882 | 1790136 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 334 | 1454990 | 1455244 | - | NZ_CP031423.1 | Microbacterium lemovicicum |
| 335 | 3570397 | 3570663 | + | NZ_CP049863.1 | Leucobacter viscericola |
| 336 | 1780604 | 1780858 | + | NZ_CP049934.1 | Leucobacter insecticola |
| 337 | 1463112 | 1463366 | + | NZ_CP047186.1 | Rathayibacter tanaceti |
| 338 | 2070329 | 2070583 | + | NZ_CP018762.1 | Microbacterium aurum |
| 339 | 1243046 | 1243309 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 340 | 550372 | 550641 | - | NZ_CP008802.1 | Actinotignum schaalii |
| 341 | 1644082 | 1644336 | - | NZ_CP044231.1 | Microbacterium caowuchunii |
| 342 | 965832 | 966095 | + | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 343 | 663957 | 664211 | - | NZ_CP040508.1 | Rhodoluna limnophila |
| 344 | 1978037 | 1978297 | - | NZ_CP020715.1 | Cnuibacter physcomitrellae |
| 345 | 606383 | 606634 | - | NZ_CP060716.1 | Leucobacter denitrificans |
| 346 | 124267 | 124533 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 347 | 3349549 | 3349812 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 348 | 128288 | 128554 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 349 | 2388533 | 2388772 | - | NZ_CP036250.1 | Egicoccus halophilus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007777.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17764.3 | 0.77 | 269 | 2793 | same-strand | 3'DNA-binding domain (3'BD) |
| 2 | PF02773.18 | 0.99 | 344 | 1447.0 | same-strand | S-adenosylmethionine synthetase, C-terminal domain |
| 3 | PF02772.18 | 0.99 | 345 | 1446 | same-strand | S-adenosylmethionine synthetase, central domain |
| 4 | PF00438.22 | 0.99 | 343 | 1445 | same-strand | S-adenosylmethionine synthetase, N-terminal domain |
| 5 | PF04127.17 | 0.91 | 315 | 54 | same-strand | DNA / pantothenate metabolism flavoprotein |
| 6 | PF02441.21 | 0.91 | 316 | 54 | same-strand | Flavoprotein |
| 7 | PF00625.23 | 0.95 | 329 | 74 | same-strand | Guanylate kinase |
| 8 | PF02786.19 | 0.77 | 267 | 2712 | same-strand | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| 9 | PF02142.24 | 0.77 | 267 | 2727.0 | same-strand | MGS-like domain |
| 10 | PF02787.21 | 0.77 | 267 | 2712 | same-strand | Carbamoyl-phosphate synthetase large chain, oligomerisation domain |
| 11 | PF02222.24 | 0.61 | 213 | 2466 | same-strand | ATP-grasp domain |
| 12 | PF00215.26 | 0.88 | 307 | 1316 | same-strand | Orotidine 5'-phosphate decarboxylase / HUMPS family |
++ More..