Result : Q664Q8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein SlyX |
| NCBI Accession ID | BX936398.1 |
| Organism | Yersinia pseudotuberculosis serotype I (strain IP32953) |
| Left | 4406506 |
| Right | 4406724 |
| Strand | + |
| Nucleotide Sequence | ATGGAACAATCCCTGCTTGAACAACGGCTAGAAATGCTGGAAAGCCGTCTGGCATTTCAGGAAGTGACGATTGAAGAACTTAACTTGATTGTAACTGAGCATCAAATGGAGATGACCAAGCTGCGGGAGCATCTGCGTTTACTGACCGATAAACTGCGGGAGTCCCAATCGTCAATGCTGGCGTCACCGTCAGAAGAAACACCGCCTCCGCACTATTGA |
| Sequence | MEQSLLEQRLEMLESRLAFQEVTIEELNLIVTEHQMEMTKLREHLRLLTDKLRESQSSMLASPSEETPPPHY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01090. Profile Description: SlyX. hypothetical protein; Provisional |
| Pubmed ID | 15358858 |
| Domain | CDD:412736 |
| Functional Category | Others |
| Uniprot ID | Q664Q8 |
| ORF Length (Amino Acid) | 72 |
++ More..
| Conservation Analysis |
No. of Species: 164
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 298011 | 298229 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 2 | 1278009 | 1278227 | + | NZ_CP007230.1 | Yersinia similis |
| 3 | 4378265 | 4378483 | + | NZ_CP043727.1 | Yersinia canariae |
| 4 | 127078 | 127296 | - | NZ_CP046293.1 | Yersinia intermedia |
| 5 | 2993698 | 2993916 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 6 | 4392346 | 4392564 | + | NZ_CP032487.1 | Yersinia hibernica |
| 7 | 1554277 | 1554495 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 8 | 2511711 | 2511929 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 9 | 2604015 | 2604233 | + | NZ_CP009787.1 | Yersinia rohdei |
| 10 | 322681 | 322899 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 11 | 4005688 | 4005906 | - | NZ_CP067057.1 | Rahnella aceris |
| 12 | 326316 | 326543 | - | NZ_CP071320.1 | Serratia ureilytica |
| 13 | 452496 | 452714 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 14 | 363240 | 363458 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 15 | 1456042 | 1456260 | + | NZ_CP053416.1 | Salmonella bongori |
| 16 | 1501629 | 1501847 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 17 | 4820555 | 4820782 | + | NZ_LT906479.1 | Serratia ficaria |
| 18 | 363967 | 364185 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 19 | 4084330 | 4084557 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 20 | 4856256 | 4856483 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 21 | 381814 | 382032 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 22 | 4209324 | 4209542 | + | NZ_CP025799.1 | Dickeya zeae |
| 23 | 447521 | 447739 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 24 | 221965 | 222183 | - | NZ_CP023525.1 | Cedecea neteri |
| 25 | 39103 | 39321 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 26 | 226466 | 226684 | - | NZ_LR134201.1 | Cedecea lapagei |
| 27 | 3301696 | 3301914 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 28 | 1643363 | 1643581 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 29 | 4725304 | 4725522 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 30 | 3605916 | 3606134 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 31 | 4214704 | 4214922 | - | NZ_CP028271.1 | Mixta intestinalis |
| 32 | 4404183 | 4404401 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 33 | 3816470 | 3816688 | - | NZ_CP038469.1 | Citrobacter tructae |
| 34 | 4060472 | 4060690 | + | NZ_LT615367.1 | Dickeya aquatica |
| 35 | 362351 | 362554 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 36 | 3477655 | 3477858 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 37 | 4197689 | 4197892 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 38 | 4360936 | 4361154 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 39 | 2818079 | 2818297 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 40 | 2264576 | 2264794 | + | NZ_CP033744.1 | Citrobacter freundii |
| 41 | 460044 | 460262 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 42 | 3965737 | 3965940 | + | NZ_LR134340.1 | Escherichia marmotae |
| 43 | 2383838 | 2384041 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 44 | 4159507 | 4159734 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 45 | 3438559 | 3438762 | + | NZ_AP014857.1 | Escherichia albertii |
| 46 | 2039112 | 2039330 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 47 | 4600226 | 4600444 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 48 | 454844 | 455062 | - | NZ_CP038853.1 | Pantoea vagans |
| 49 | 1666888 | 1667106 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 50 | 3446932 | 3447135 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 51 | 1329074 | 1329256 | + | NZ_CP011254.1 | Serratia fonticola |
| 52 | 431932 | 432150 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 53 | 444708 | 444926 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 54 | 445214 | 445432 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 55 | 466703 | 466921 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 56 | 3344862 | 3345089 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 57 | 391114 | 391332 | - | NZ_CP061511.1 | Mixta calida |
| 58 | 304224 | 304442 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 59 | 4190194 | 4190412 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 60 | 3541021 | 3541239 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 61 | 3494396 | 3494614 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 62 | 2889139 | 2889366 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 63 | 4213274 | 4213492 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 64 | 1200105 | 1200323 | + | NZ_CP019706.1 | Pantoea alhagi |
| 65 | 4642314 | 4642532 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 66 | 3007661 | 3007879 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 67 | 412785 | 413003 | - | NZ_CP050508.1 | Raoultella terrigena |
| 68 | 4302101 | 4302319 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 69 | 4410216 | 4410434 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 70 | 4413844 | 4414062 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 71 | 394222 | 394440 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 72 | 1266970 | 1267188 | + | NZ_CP026047.1 | Raoultella planticola |
| 73 | 449572 | 449790 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 74 | 3626643 | 3626861 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 75 | 2104242 | 2104460 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 76 | 299949 | 300167 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 77 | 2707154 | 2707372 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 78 | 501149 | 501367 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 79 | 460226 | 460444 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 80 | 3225403 | 3225621 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 81 | 4306196 | 4306414 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 82 | 2993409 | 2993627 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 83 | 4320662 | 4320880 | + | NC_015968.1 | Enterobacter soli |
| 84 | 2460551 | 2460769 | + | NZ_CP049115.1 | Pantoea stewartii |
| 85 | 411235 | 411453 | - | NZ_CP041247.1 | Raoultella electrica |
| 86 | 376239 | 376460 | - | NZ_CP048796.1 | Providencia vermicola |
| 87 | 425625 | 425840 | - | NZ_LS483422.1 | Providencia heimbachae |
| 88 | 2868759 | 2868977 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 89 | 1372319 | 1372546 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 90 | 667555 | 667737 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 91 | 4457235 | 4457453 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 92 | 4253505 | 4253723 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 93 | 4716401 | 4716619 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 94 | 3547461 | 3547679 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 95 | 439835 | 440053 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 96 | 2118483 | 2118701 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 97 | 4884200 | 4884418 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 98 | 4040488 | 4040706 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 99 | 435654 | 435872 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 100 | 4423407 | 4423625 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 101 | 1151031 | 1151249 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 102 | 409734 | 409952 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 103 | 414658 | 414876 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 104 | 410828 | 411046 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 105 | 4880186 | 4880404 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 106 | 420366 | 420584 | - | NZ_CP054254.1 | Klebsiella variicola |
| 107 | 4269644 | 4269829 | + | NZ_CP050150.1 | Hafnia alvei |
| 108 | 465724 | 465942 | - | NZ_CP026377.1 | Mixta gaviniae |
| 109 | 493549 | 493767 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 110 | 447723 | 447944 | + | NZ_CP029736.1 | Providencia rettgeri |
| 111 | 725327 | 725545 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 112 | 967075 | 967278 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 113 | 1168298 | 1168516 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 114 | 5128036 | 5128239 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 115 | 532699 | 532917 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 116 | 3491066 | 3491248 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 117 | 4195055 | 4195246 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 118 | 1429571 | 1429753 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 119 | 362951 | 363169 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 120 | 274565 | 274798 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 121 | 2001617 | 2001850 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 122 | 93674 | 93892 | - | NZ_CP015581.1 | Tatumella citrea |
| 123 | 4068136 | 4068354 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 124 | 3900897 | 3901115 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 125 | 66804 | 67022 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 126 | 3785567 | 3785785 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 127 | 212826 | 213044 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 128 | 3978250 | 3978468 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 129 | 1223605 | 1223787 | + | NZ_CP026364.1 | Proteus hauseri |
| 130 | 4441061 | 4441279 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 131 | 3074887 | 3075105 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 132 | 3668080 | 3668298 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 133 | 305392 | 305610 | - | NZ_CP065534.1 | Lonsdalea populi |
| 134 | 348619 | 348837 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 135 | 760789 | 761007 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 136 | 1129208 | 1129390 | + | NZ_CP065640.1 | Serratia rubidaea |
| 137 | 3608599 | 3608793 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 138 | 3874561 | 3874779 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 139 | 3641258 | 3641476 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 140 | 3922797 | 3923015 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 141 | 166434 | 166637 | - | NZ_CP007445.1 | Gilliamella apicola |
| 142 | 3108809 | 3109027 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 143 | 183076 | 183279 | - | NZ_CP009056.1 | Frischella perrara |
| 144 | 2795379 | 2795603 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 145 | 135870 | 136088 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 146 | 2085804 | 2086025 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 147 | 2034572 | 2034793 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 148 | 806873 | 807064 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 149 | 1076637 | 1076852 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 150 | 2503524 | 2503739 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 151 | 3645200 | 3645415 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 152 | 507322 | 507543 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 153 | 2336046 | 2336270 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 154 | 484188 | 484421 | - | NZ_CP028897.1 | Dongshaea marina |
| 155 | 3736330 | 3736545 | + | NZ_AP022188.1 | Aeromonas media |
| 156 | 4142319 | 4142534 | - | NZ_CP044060.1 | Aeromonas veronii |
| 157 | 4392966 | 4393181 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 158 | 1306729 | 1306905 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 159 | 734895 | 735110 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 160 | 961672 | 961848 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 161 | 3463850 | 3464026 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 162 | 2239452 | 2239643 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 163 | 508463 | 508684 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 164 | 441655 | 441876 | - | NZ_LR134167.1 | Avibacterium volantium |
| 165 | 1531771 | 1531962 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134373.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00005.29 | 0.78 | 128 | 3524 | same-strand | ABC transporter |
| 2 | PF12848.9 | 0.75 | 123 | 3523.0 | same-strand | ABC transporter |
| 3 | PF16326.7 | 0.74 | 121 | 3525.5 | same-strand | ABC transporter C-terminal domain |
| 4 | PF02525.19 | 0.73 | 119 | 2813.5 | opposite-strand | Flavodoxin-like fold |
| 5 | PF00999.23 | 0.73 | 120 | 1010 | opposite-strand | Sodium/hydrogen exchanger family |
| 6 | PF02254.20 | 0.74 | 121 | 1007.5 | opposite-strand | TrkA-N domain |
| 7 | PF00254.30 | 0.99 | 163 | 216 | opposite-strand | FKBP-type peptidyl-prolyl cis-trans isomerase |
| 8 | PF01346.20 | 0.99 | 162 | 239 | opposite-strand | Domain amino terminal to FKBP-type peptidyl-prolyl isomerase |
| 9 | PF08348.13 | 0.85 | 139 | 1285.5 | opposite-strand | YheO-like PAS domain |
| 10 | PF13309.8 | 0.85 | 139 | 1292.0 | opposite-strand | HTH domain |
| 11 | PF13384.8 | 0.73 | 120 | 1289 | opposite-strand | Homeodomain-like domain |
| 12 | PF02635.17 | 0.8 | 132 | 2291 | opposite-strand | DsrE/DsrF-like family |
| 13 | PF04077.14 | 0.76 | 124 | 2755 | opposite-strand | DsrH like protein |
++ More..