Result : Q65W97
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein SlyX homolog |
| NCBI Accession ID | AE016827.1 |
| Organism | Mannheimia succiniciproducens (strain MBEL55E) |
| Left | 134914 |
| Right | 135168 |
| Strand | - |
| Nucleotide Sequence | TTGGCTATTGTACAACATTTATTTGGGATTACTATGCAAAACTCAGCAAATTTAGAGCAACGGATTGCAGAACTGGAAATGAAAATTACCTTTCAGGAAGGGATAATCGAAGAGCTCAATCAGGCATTGATCGAACAGCAGTTCGTCATTGATAAAATGCAATTGCAAATGCGTCATGTGGCCAATAAATTGAAGGATTTACAACCGGCTAACATCGCAACGCAAGCGGAAGAAACACCGCCGCCGCATTATTAA |
| Sequence | MAIVQHLFGITMQNSANLEQRIAELEMKITFQEGIIEELNQALIEQQFVIDKMQLQMRHVANKLKDLQPANIATQAEETPPPHY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01090. Profile Description: SlyX. hypothetical protein; Provisional |
| Pubmed ID | 15378067 |
| Domain | CDD:412736 |
| Functional Category | Others |
| Uniprot ID | Q65W97 |
| ORF Length (Amino Acid) | 84 |
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| Conservation Analysis |
No. of Species: 62
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 134914 | 135168 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 2 | 2008365 | 2008619 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 3 | 371148 | 371369 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 4 | 1642837 | 1643058 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 5 | 1306684 | 1306905 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 6 | 2127508 | 2127729 | + | NZ_CP018804.1 | Histophilus somni |
| 7 | 725255 | 725476 | + | NZ_CP028926.1 | Pasteurella multocida |
| 8 | 40622 | 40843 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 9 | 1361845 | 1362066 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 10 | 441655 | 441876 | - | NZ_LR134167.1 | Avibacterium volantium |
| 11 | 451420 | 451641 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 12 | 522867 | 523088 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 13 | 555582 | 555803 | - | NZ_CP046531.1 | Mannheimia ovis |
| 14 | 601058 | 601279 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 15 | 337229 | 337450 | + | NZ_CP061280.1 | Mannheimia bovis |
| 16 | 832995 | 833216 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 17 | 2485204 | 2485425 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 18 | 395217 | 395438 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 19 | 1977435 | 1977656 | + | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 20 | 806873 | 807088 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 21 | 1910705 | 1910926 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 22 | 26794 | 27018 | - | NZ_CP016604.1 | Otariodibacter oris |
| 23 | 507322 | 507543 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 24 | 508463 | 508684 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 25 | 2085804 | 2086025 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 26 | 2034572 | 2034793 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 27 | 2239419 | 2239643 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 28 | 1531738 | 1531962 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 29 | 470311 | 470532 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 30 | 595980 | 596201 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 31 | 573845 | 574066 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 32 | 2795379 | 2795603 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 33 | 329666 | 329893 | - | NZ_AP014635.1 | Vibrio tritonius |
| 34 | 255050 | 255271 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 35 | 1936394 | 1936633 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 36 | 292098 | 292319 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 37 | 1476136 | 1476363 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 38 | 5128036 | 5128254 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 39 | 3080782 | 3081012 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 40 | 778293 | 778505 | - | NZ_CP040990.1 | Vibrio furnissii |
| 41 | 3344862 | 3345089 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 42 | 2469157 | 2469369 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 43 | 4069936 | 4070148 | + | NZ_CP020472.1 | Shewanella japonica |
| 44 | 1026006 | 1026218 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 45 | 4159507 | 4159734 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 46 | 881918 | 882130 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 47 | 4359954 | 4360202 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 48 | 4302101 | 4302319 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 49 | 3900897 | 3901115 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 50 | 667516 | 667737 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 51 | 362951 | 363169 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 52 | 3438544 | 3438762 | + | NZ_AP014857.1 | Escherichia albertii |
| 53 | 362351 | 362569 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 54 | 3477640 | 3477858 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 55 | 4197674 | 4197892 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 56 | 3446917 | 3447135 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 57 | 3965722 | 3965940 | + | NZ_LR134340.1 | Escherichia marmotae |
| 58 | 2383823 | 2384041 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 59 | 4360936 | 4361154 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 60 | 3605916 | 3606134 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 61 | 93674 | 93892 | - | NZ_CP015581.1 | Tatumella citrea |
| 62 | 3718429 | 3718641 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 63 | 4084330 | 4084557 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_006300.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00254.30 | 1.0 | 62 | 107.5 | opposite-strand | FKBP-type peptidyl-prolyl cis-trans isomerase |
| 2 | PF01346.20 | 1.0 | 62 | 215 | opposite-strand | Domain amino terminal to FKBP-type peptidyl-prolyl isomerase |
| 3 | PF08348.13 | 0.87 | 54 | 1182 | opposite-strand | YheO-like PAS domain |
| 4 | PF13309.8 | 0.87 | 54 | 1182 | opposite-strand | HTH domain |
| 5 | PF02635.17 | 0.9 | 56 | 1955.0 | opposite-strand | DsrE/DsrF-like family |
| 6 | PF04077.14 | 0.69 | 43 | 2345.5 | opposite-strand | DsrH like protein |
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