Result : Q65TM9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0181 protein MS1074 |
| NCBI Accession ID | |
| Organism | Mannheimia succiniciproducens (strain MBEL55E) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MFDNALLSLSHEQQQQAVEKIQVLMQRGMSSGEAIALVAKELREAHDNEKINSEKTKSAEK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22520. Profile Description: Uncharacterized protein family (UPF0181). This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH. |
| Pubmed ID | 15378067 |
| Domain | CDD:419844 |
| Functional Category | Others |
| Uniprot ID | Q65TM9 |
| ORF Length (Amino Acid) | 61 |
++ More..
| Conservation Analysis |
No. of Species: 92
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1055734 | 1055919 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 2 | 695885 | 696070 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 3 | 1888219 | 1888383 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 4 | 2395049 | 2395234 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 5 | 1716202 | 1716363 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 6 | 4536833 | 4537012 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 7 | 546542 | 546721 | - | NZ_CP033744.1 | Citrobacter freundii |
| 8 | 1968719 | 1968898 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 4137933 | 4138112 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 10 | 2804681 | 2804863 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 11 | 5196761 | 5196940 | - | NZ_CP026047.1 | Raoultella planticola |
| 12 | 2080542 | 2080727 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 13 | 2267681 | 2267860 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 14 | 2664773 | 2664952 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 15 | 1842864 | 1843058 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 16 | 1530361 | 1530543 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 17 | 1979870 | 1980058 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 18 | 2358761 | 2358940 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 19 | 2035658 | 2035837 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 20 | 1955384 | 1955563 | + | NZ_LR134340.1 | Escherichia marmotae |
| 21 | 251732 | 251911 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 22 | 1894552 | 1894731 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 23 | 1827477 | 1827656 | - | NZ_AP014857.1 | Escherichia albertii |
| 24 | 2496518 | 2496697 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 25 | 681871 | 682056 | - | NZ_CP049115.1 | Pantoea stewartii |
| 26 | 1378285 | 1378443 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 27 | 1536885 | 1537043 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 28 | 189263 | 189421 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 29 | 909532 | 909717 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 30 | 1644433 | 1644618 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 31 | 2500063 | 2500245 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 32 | 1477594 | 1477776 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 33 | 1920903 | 1921082 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 34 | 2540986 | 2541171 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 35 | 2582201 | 2582389 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 36 | 4431785 | 4431964 | - | NZ_CP053416.1 | Salmonella bongori |
| 37 | 2126223 | 2126408 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 38 | 1132470 | 1132649 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 39 | 2713548 | 2713730 | - | NC_015968.1 | Enterobacter soli |
| 40 | 871202 | 871366 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 41 | 3194686 | 3194865 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 42 | 1449880 | 1450038 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 43 | 928124 | 928285 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 44 | 2416339 | 2416521 | - | NZ_CP061511.1 | Mixta calida |
| 45 | 2539827 | 2540009 | - | NZ_CP026377.1 | Mixta gaviniae |
| 46 | 588421 | 588603 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 47 | 2761192 | 2761374 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 48 | 2782086 | 2782268 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 49 | 2783126 | 2783308 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 50 | 4507740 | 4507922 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 51 | 2871329 | 2871511 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 52 | 2994774 | 2994956 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 53 | 4046643 | 4046828 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 54 | 4242704 | 4242889 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 55 | 1617691 | 1617873 | - | NZ_CP028271.1 | Mixta intestinalis |
| 56 | 138124 | 138306 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 57 | 1234045 | 1234209 | - | NZ_CP046531.1 | Mannheimia ovis |
| 58 | 1386246 | 1386410 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 59 | 1783001 | 1783165 | + | NZ_CP061280.1 | Mannheimia bovis |
| 60 | 3753502 | 3753687 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 61 | 1897700 | 1897885 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 62 | 2240316 | 2240498 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 63 | 2966962 | 2967144 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 64 | 707641 | 707823 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 65 | 2002754 | 2002936 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 66 | 1980520 | 1980702 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 67 | 2075434 | 2075607 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 68 | 1455562 | 1455741 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 69 | 2525035 | 2525214 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 70 | 2272553 | 2272744 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 71 | 4149009 | 4149188 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 72 | 2475343 | 2475531 | - | NZ_CP025799.1 | Dickeya zeae |
| 73 | 2057745 | 2057936 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 74 | 1711696 | 1711860 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 75 | 1156056 | 1156223 | - | NZ_CP018804.1 | Histophilus somni |
| 76 | 2168631 | 2168816 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 77 | 3554126 | 3554308 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 78 | 1824439 | 1824633 | + | NZ_CP038853.1 | Pantoea vagans |
| 79 | 3455165 | 3455353 | + | NZ_CP019706.1 | Pantoea alhagi |
| 80 | 1352217 | 1352372 | + | NZ_CP025793.1 | Vibrio jasicida 090810c |
| 81 | 537648 | 537806 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 82 | 2152838 | 2153011 | + | NZ_CP048796.1 | Providencia vermicola |
| 83 | 1831252 | 1831407 | + | NZ_CP018311.1 | Vibrio rotiferianus |
| 84 | 2955560 | 2955742 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 85 | 232562 | 232720 | + | NZ_CP033077.1 | Vibrio zhugei |
| 86 | 1721392 | 1721547 | - | NZ_CP030789.1 | Vibrio campbellii |
| 87 | 1010735 | 1010890 | - | NZ_CP019960.1 | Vibrio owensii |
| 88 | 1915832 | 1916002 | - | NZ_CP067057.1 | Rahnella aceris |
| 89 | 2235037 | 2235231 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 90 | 1467695 | 1467877 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 91 | 1739356 | 1739508 | - | NZ_LT960612.1 | Vibrio tapetis subsp. tapetis |
| 92 | 540272 | 540427 | - | NZ_CP022742.1 | Vibrio qinghaiensis |
| 93 | 441304 | 441453 | + | NZ_AP018690.1 | Vibrio aphrogenes |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012880.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00425.20 | 0.74 | 68 | 89 | opposite-strand | chorismate binding enzyme |
| 2 | PF04715.15 | 0.74 | 68 | 89 | opposite-strand | Anthranilate synthase component I, N terminal region |
| 3 | PF00293.30 | 0.68 | 63 | 1449.0 | opposite-strand | NUDIX domain |
| 4 | PF03313.17 | 0.74 | 68 | 2211 | opposite-strand | Serine dehydratase alpha chain |
| 5 | PF03315.17 | 0.75 | 69 | 2211.0 | opposite-strand | Serine dehydratase beta chain |
| 6 | PF03741.18 | 0.64 | 59 | 5309.0 | same-strand | Integral membrane protein TerC family |
| 7 | PF03471.19 | 0.64 | 59 | 5309.0 | same-strand | Transporter associated domain |
++ More..