Result : Q65QC6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | FAD assembly factor SdhE |
| NCBI Accession ID | |
| Organism | Mannheimia succiniciproducens (strain MBEL55E) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MAEYDKLRLEWDCRRGMLELDKIIMPFYLEQFDNLTETQKATFVRLLACTDLQLFSWLFKRARASDTELQQMVDLILEKQGVVINN |
| Source of smORF | Swiss-Prot |
| Function | An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well. {ECO:0000250|UniProtKB:G4V4G2}. |
| Pubmed ID | 15378067 |
| Domain | CDD:412748 |
| Functional Category | Others |
| Uniprot ID | Q65QC6 |
| ORF Length (Amino Acid) | 86 |
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| Conservation Analysis |
No. of Species: 110
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1753824 | 1754084 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 2 | 2161881 | 2162141 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 3 | 411379 | 411636 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 4 | 1170498 | 1170752 | - | NZ_CP028926.1 | Pasteurella multocida |
| 5 | 2085528 | 2085782 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 6 | 113751 | 113999 | - | NZ_LR134167.1 | Avibacterium volantium |
| 7 | 604032 | 604289 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 8 | 431575 | 431832 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 9 | 1630011 | 1630268 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 10 | 480711 | 480920 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 11 | 736380 | 736628 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 12 | 2073723 | 2073977 | + | NZ_CP018804.1 | Histophilus somni |
| 13 | 1381948 | 1382202 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 14 | 141944 | 142198 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 15 | 461299 | 461553 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 16 | 79468 | 79713 | - | NZ_CP016180.1 | Pasteurella skyensis |
| 17 | 291885 | 292133 | + | NZ_CP046531.1 | Mannheimia ovis |
| 18 | 321608 | 321856 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 19 | 2152123 | 2152371 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 20 | 2201038 | 2201283 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 21 | 1779980 | 1780228 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 22 | 1963381 | 1963599 | - | NZ_CP009787.1 | Yersinia rohdei |
| 23 | 518695 | 518907 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 24 | 741901 | 742110 | - | NZ_CP014056.2 | Grimontia hollisae |
| 25 | 4472237 | 4472455 | + | NZ_CP067057.1 | Rahnella aceris |
| 26 | 814507 | 814716 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 27 | 4259278 | 4259496 | + | NZ_CP038469.1 | Citrobacter tructae |
| 28 | 5198186 | 5198404 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 29 | 3725752 | 3725970 | - | NZ_CP032487.1 | Yersinia hibernica |
| 30 | 3628428 | 3628646 | - | NZ_CP029736.1 | Providencia rettgeri |
| 31 | 3001500 | 3001709 | - | NZ_AP014635.1 | Vibrio tritonius |
| 32 | 778941 | 779159 | + | NZ_CP046293.1 | Yersinia intermedia |
| 33 | 857479 | 857697 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 34 | 1806670 | 1806888 | - | NZ_CP033744.1 | Citrobacter freundii |
| 35 | 3152462 | 3152680 | - | NZ_CP065534.1 | Lonsdalea populi |
| 36 | 616031 | 616249 | + | NZ_LR134201.1 | Cedecea lapagei |
| 37 | 1283632 | 1283871 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 38 | 347473 | 347691 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 39 | 3949592 | 3949810 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 40 | 3740725 | 3740943 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 41 | 4268144 | 4268353 | - | NZ_LT906479.1 | Serratia ficaria |
| 42 | 1460211 | 1460420 | + | NZ_CP048796.1 | Providencia vermicola |
| 43 | 3229329 | 3229547 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 44 | 779610 | 779828 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 45 | 1826670 | 1826888 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 46 | 1119876 | 1120094 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 47 | 2391772 | 2391990 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 48 | 264110 | 264319 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 49 | 3479357 | 3479587 | - | NZ_CP061511.1 | Mixta calida |
| 50 | 2835472 | 2835702 | - | NZ_CP028271.1 | Mixta intestinalis |
| 51 | 1383571 | 1383789 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 52 | 2364208 | 2364429 | + | NZ_CP019706.1 | Pantoea alhagi |
| 53 | 3677578 | 3677808 | - | NZ_CP026377.1 | Mixta gaviniae |
| 54 | 2691871 | 2692098 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 55 | 965110 | 965328 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 56 | 387175 | 387393 | - | NZ_CP007230.1 | Yersinia similis |
| 57 | 842773 | 842991 | + | NZ_CP071320.1 | Serratia ureilytica |
| 58 | 3558625 | 3558843 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 59 | 175506 | 175724 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 60 | 2214635 | 2214853 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 61 | 3846410 | 3846628 | - | NC_015968.1 | Enterobacter soli |
| 62 | 2092446 | 2092655 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 63 | 4269054 | 4269272 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 64 | 840193 | 840402 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 65 | 4391180 | 4391398 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 66 | 613834 | 614052 | + | NZ_CP023525.1 | Cedecea neteri |
| 67 | 3849462 | 3849680 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 68 | 3969871 | 3970089 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 69 | 4030885 | 4031103 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 70 | 4332787 | 4333005 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 71 | 3934262 | 3934480 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 72 | 1584648 | 1584866 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 73 | 3791561 | 3791779 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 74 | 4525012 | 4525230 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 75 | 492281 | 492490 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 76 | 548425 | 548634 | - | NZ_CP011254.1 | Serratia fonticola |
| 77 | 891587 | 891805 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 78 | 1744908 | 1745126 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 79 | 480233 | 480451 | - | NZ_CP065640.1 | Serratia rubidaea |
| 80 | 851748 | 851957 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 81 | 747302 | 747520 | + | NZ_CP050150.1 | Hafnia alvei |
| 82 | 4319406 | 4319624 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 83 | 1477244 | 1477453 | + | NZ_LS483422.1 | Providencia heimbachae |
| 84 | 799711 | 799929 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 85 | 3861673 | 3861891 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 86 | 3431713 | 3431931 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 87 | 4551614 | 4551832 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 88 | 4189561 | 4189779 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 89 | 2800999 | 2801250 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 90 | 3938860 | 3939078 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 91 | 867892 | 868110 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 92 | 759874 | 760083 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 93 | 2166075 | 2166284 | - | NZ_CP035688.1 | Vibrio metoecus |
| 94 | 4041316 | 4041525 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 95 | 2590214 | 2590432 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 96 | 789354 | 789572 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 97 | 3598769 | 3598987 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 98 | 543406 | 543624 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 99 | 3332325 | 3332543 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 100 | 3481126 | 3481344 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 101 | 4316055 | 4316273 | - | NZ_LR134494.1 | Serratia quinivorans |
| 102 | 2512471 | 2512680 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 103 | 3151221 | 3151439 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 104 | 4188718 | 4188936 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 105 | 772428 | 772646 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 106 | 1009639 | 1009890 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 107 | 2326941 | 2327150 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 108 | 2394456 | 2394665 | - | NZ_AP019657.1 | Vibrio ponticus |
| 109 | 2425354 | 2425563 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 110 | 794593 | 794844 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009787.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00258.27 | 0.68 | 75 | 436 | opposite-strand | Flavodoxin |
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