Result : Q64TK1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L28 |
| NCBI Accession ID | AP006841.1 |
| Organism | Bacteroides fragilis (strain YCH46) |
| Left | 2807286 |
| Right | 2807546 |
| Strand | - |
| Nucleotide Sequence | ATGTCGAAGATTTGTCAAATTACCGGAAAGAAAGCCATGATTGGCAACAATGTTTCACACTCAAAGAGAAGAACTAAAAGAACCTTTGATTTGAACTTGTTTAACAAAAAGTTCTACTATGTAGAACAGGACTGCTGGATCAGCCTGAGCCTCTGTGCTGCTGGTTTGCGTATTATTAATAAGAAAGGTTTGGACGCTGCTTTGAATGATGCGGTTGCCAAAGGGTATTGTGATTGGAAAACCATTAAAGTTGTTGGCTAA |
| Sequence | MSKICQITGKKAMIGNNVSHSKRRTKRTFDLNLFNKKFYYVEQDCWISLSLCAAGLRIINKKGLDAALNDAVAKGYCDWKTIKVVG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 15466707 |
| Domain | CDD:412338 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q64TK1 |
| ORF Length (Amino Acid) | 86 |
++ More..
| Conservation Analysis |
No. of Species: 166
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2843487 | 2843747 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 2 | 4704902 | 4705162 | - | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 3 | 1993989 | 1994249 | + | NZ_CP015401.2 | Bacteroides caecimuris |
| 4 | 914426 | 914686 | + | NZ_CP012938.1 | Bacteroides ovatus |
| 5 | 1080023 | 1080283 | - | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 6 | 2773428 | 2773688 | + | NC_014933.1 | Bacteroides helcogenes P 36-108 |
| 7 | 458815 | 459075 | - | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 8 | 1391694 | 1391954 | + | NZ_CP069440.1 | Phocaeicola coprophilus |
| 9 | 4110842 | 4111102 | + | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 10 | 4518946 | 4519206 | + | NZ_LR699004.1 | Phocaeicola dorei |
| 11 | 616592 | 616852 | + | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 12 | 611766 | 612026 | + | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 13 | 2013735 | 2013998 | - | NZ_LR134384.1 | Prevotella oris |
| 14 | 550048 | 550311 | + | NZ_CP013195.1 | Prevotella enoeca |
| 15 | 476419 | 476682 | - | NC_014371.1 | Prevotella melaninogenica ATCC 25845 |
| 16 | 416591 | 416854 | + | NZ_CP023864.1 | Prevotella jejuni |
| 17 | 882195 | 882458 | + | NC_014033.1 | Prevotella ruminicola 23 |
| 18 | 505846 | 506109 | - | NZ_CP012075.1 | Prevotella fusca JCM 17724 |
| 19 | 526890 | 527153 | + | NZ_CP024728.1 | Prevotella intermedia |
| 20 | 582212 | 582472 | + | NZ_CP015402.2 | Muribaculum intestinale |
| 21 | 2976567 | 2976821 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 22 | 2107733 | 2107972 | - | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 23 | 1422106 | 1422345 | - | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 24 | 1223607 | 1223846 | + | NZ_CP054012.1 | Parabacteroides distasonis |
| 25 | 1146220 | 1146459 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 26 | 2116139 | 2116387 | + | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 27 | 1989127 | 1989384 | - | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 28 | 4335315 | 4335557 | + | NZ_CP007451.1 | Draconibacterium orientale |
| 29 | 993526 | 993777 | + | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 30 | 3221984 | 3222226 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 31 | 876764 | 877006 | - | NZ_CP032819.1 | Butyricimonas faecalis |
| 32 | 870133 | 870372 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 33 | 1036625 | 1036867 | - | NZ_LT906459.1 | Odoribacter splanchnicus |
| 34 | 5077221 | 5077463 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 35 | 4362410 | 4362655 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 36 | 1050893 | 1051129 | + | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 37 | 355399 | 355635 | - | NZ_CP025938.1 | Tamlana carrageenivorans |
| 38 | 1103923 | 1104162 | - | NZ_CP061813.1 | Polaribacter haliotis |
| 39 | 3376971 | 3377207 | - | NZ_CP010817.1 | Myroides profundi |
| 40 | 2640858 | 2641097 | + | NZ_CP019419.1 | Polaribacter reichenbachii |
| 41 | 3573932 | 3574171 | + | NZ_CP040812.1 | Antarcticibacterium flavum |
| 42 | 1531144 | 1531380 | + | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 43 | 426696 | 426935 | + | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 44 | 3965698 | 3965934 | + | NZ_CP012898.1 | Algibacter alginicilyticus |
| 45 | 3097279 | 3097515 | + | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 46 | 2262070 | 2262309 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 47 | 1847365 | 1847601 | + | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 48 | 1349257 | 1349493 | - | NZ_CP025791.1 | Flavivirga eckloniae |
| 49 | 3703614 | 3703853 | - | NZ_LT899436.1 | Tenacibaculum jejuense |
| 50 | 515124 | 515363 | + | NZ_CP018155.1 | Tenacibaculum todarodis |
| 51 | 3934868 | 3935104 | - | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 52 | 2780370 | 2780606 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 53 | 1499118 | 1499357 | + | NZ_CP034930.1 | Apibacter raozihei |
| 54 | 588105 | 588341 | - | NZ_CP039934.1 | Myroides fluvii |
| 55 | 3075955 | 3076194 | - | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 56 | 2024640 | 2024876 | + | NZ_CP041637.1 | Formosa sediminum |
| 57 | 3300151 | 3300387 | + | NZ_CP022957.1 | Maribacter cobaltidurans |
| 58 | 1289529 | 1289768 | - | NZ_CP018153.1 | Gramella salexigens |
| 59 | 2388483 | 2388722 | - | NC_008571.1 | Gramella forsetii KT0803 |
| 60 | 4917492 | 4917728 | + | NZ_CP019288.1 | Kordia antarctica |
| 61 | 868667 | 868906 | - | NZ_CP013355.1 | Lutibacter profundi |
| 62 | 579245 | 579481 | - | NZ_CP039456.1 | Changchengzhania lutea |
| 63 | 1160422 | 1160658 | + | NZ_CP053348.1 | Winogradskyella forsetii |
| 64 | 2887331 | 2887570 | + | NZ_CP016359.1 | Gramella flava JLT2011 |
| 65 | 2140796 | 2141035 | - | NZ_CP020822.1 | Tenacibaculum maritimum |
| 66 | 1542530 | 1542766 | - | NZ_LR134404.1 | Weeksella virosa |
| 67 | 4148706 | 4148945 | - | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 68 | 4155653 | 4155892 | - | NZ_CP023049.2 | Chryseobacterium piperi |
| 69 | 2462895 | 2463131 | + | NZ_CP011071.1 | Muricauda lutaonensis |
| 70 | 2184579 | 2184815 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 71 | 1642502 | 1642738 | + | NZ_CP032050.1 | Euzebyella marina |
| 72 | 1083364 | 1083600 | + | NZ_CP053351.1 | Winogradskyella schleiferi |
| 73 | 2356879 | 2357115 | - | NZ_CP019352.1 | Lacinutrix venerupis |
| 74 | 3742860 | 3743099 | + | NZ_CP017477.1 | Polaribacter vadi |
| 75 | 1352527 | 1352766 | + | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 76 | 1693610 | 1693849 | - | NZ_CP019342.1 | Nonlabens tegetincola |
| 77 | 2613496 | 2613735 | + | NZ_CP028136.1 | Gramella fulva |
| 78 | 4804841 | 4805083 | - | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 79 | 105811 | 106050 | + | NZ_CP017478.1 | Urechidicola croceus |
| 80 | 1176042 | 1176275 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 81 | 33204 | 33440 | - | NZ_CP031188.1 | Flavobacterium arcticum |
| 82 | 3813883 | 3814125 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 83 | 1629234 | 1629467 | + | NZ_CP041345.1 | Tenuifilum thalassicum |
| 84 | 449549 | 449785 | - | NZ_CP058595.1 | Costertonia aggregata |
| 85 | 3532776 | 3533015 | + | NZ_CP033914.1 | Chryseobacterium shandongense |
| 86 | 2509074 | 2509298 | + | NZ_CP029463.1 | Flavobacterium sediminis |
| 87 | 1740579 | 1740818 | - | NZ_CP014766.1 | Pontibacter akesuensis |
| 88 | 3967841 | 3968077 | - | NZ_CP029186.1 | Flavobacterium album |
| 89 | 733042 | 733278 | - | NC_015844.1 | Zobellia galactanivorans |
| 90 | 23214 | 23450 | - | NZ_CP013210.1 | Empedobacter brevis |
| 91 | 2455023 | 2455262 | + | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 92 | 3077483 | 3077731 | + | NZ_CP034161.1 | Epilithonimonas vandammei |
| 93 | 784768 | 785001 | - | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 94 | 3393713 | 3393955 | - | NZ_LR215974.1 | Chryseobacterium taihuense |
| 95 | 1910508 | 1910750 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 96 | 2298581 | 2298823 | + | NZ_CP033926.1 | Chryseobacterium joostei |
| 97 | 163224 | 163466 | + | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 98 | 2377255 | 2377497 | - | NZ_CP033920.1 | Chryseobacterium carnipullorum |
| 99 | 4772804 | 4773046 | + | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 100 | 2628033 | 2628275 | + | NZ_LR134289.1 | Chryseobacterium gleum |
| 101 | 226400 | 226642 | + | NZ_CP033924.1 | Chryseobacterium lactis |
| 102 | 140237 | 140473 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 103 | 2192778 | 2193014 | + | NZ_CP020918.1 | Flavobacterium faecale |
| 104 | 3074438 | 3074677 | - | NZ_CP048106.1 | Pontibacter pudoricolor |
| 105 | 2464746 | 2464982 | + | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 106 | 653060 | 653302 | - | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 107 | 2405426 | 2405668 | - | NZ_CP030041.1 | Echinicola strongylocentroti |
| 108 | 566004 | 566246 | - | NZ_CP040106.1 | Echinicola rosea |
| 109 | 1296129 | 1296362 | + | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 110 | 3406031 | 3406267 | + | NZ_CP015067.2 | Elizabethkingia anophelis |
| 111 | 3261069 | 3261305 | - | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 112 | 2805344 | 2805571 | + | NZ_CP030104.1 | Flagellimonas maritima |
| 113 | 3109434 | 3109676 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 114 | 3099509 | 3099751 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 115 | 3821899 | 3822135 | - | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 116 | 525056 | 525292 | - | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 117 | 1487217 | 1487453 | + | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 118 | 662392 | 662628 | - | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 119 | 1892316 | 1892552 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 120 | 2418941 | 2419168 | + | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 121 | 2949531 | 2949773 | - | NZ_CP015199.1 | Chryseobacterium glaciei |
| 122 | 235631 | 235867 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 123 | 1603617 | 1603853 | - | NZ_LR134503.1 | Kaistella jeonii |
| 124 | 1399210 | 1399449 | + | NZ_CP034549.1 | Nonlabens ponticola |
| 125 | 853258 | 853497 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 126 | 883483 | 883722 | + | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 127 | 1539489 | 1539725 | - | NZ_CP037933.1 | Flavobacterium nackdongense |
| 128 | 2768646 | 2768882 | + | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 129 | 1685847 | 1686089 | - | NZ_CP034159.1 | Kaistella carnis |
| 130 | 1683028 | 1683261 | + | NZ_CP007501.1 | Polynucleobacter duraquae |
| 131 | 1805766 | 1805999 | + | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 132 | 940174 | 940419 | + | NZ_CP063145.1 | Cruoricaptor ignavus |
| 133 | 332878 | 333111 | + | NZ_AP023049.1 | Alistipes indistinctus |
| 134 | 5417916 | 5418152 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 135 | 1225088 | 1225324 | - | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 136 | 497936 | 498172 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 137 | 3215959 | 3216195 | - | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 138 | 2808510 | 2808749 | + | NC_018721.1 | Psychroflexus torquis ATCC 700755 |
| 139 | 1645173 | 1645406 | + | NZ_CP023276.1 | Polynucleobacter difficilis |
| 140 | 969954 | 970187 | - | NZ_AP019735.1 | Alistipes communis |
| 141 | 952306 | 952539 | - | NZ_CP041352.1 | Casimicrobium huifangae |
| 142 | 2206095 | 2206331 | + | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 143 | 307391 | 307627 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 144 | 339988 | 340224 | - | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 145 | 2054325 | 2054561 | - | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 146 | 5332852 | 5333088 | + | NZ_CP028324.1 | Massilia armeniaca |
| 147 | 2853003 | 2853245 | + | NZ_LR134441.1 | Kaistella antarctica |
| 148 | 938336 | 938569 | + | NZ_AP019736.1 | Alistipes dispar |
| 149 | 2274326 | 2274559 | - | NC_018011.1 | Alistipes finegoldii DSM 17242 |
| 150 | 1736354 | 1736587 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 151 | 3530371 | 3530607 | + | NZ_CP040017.1 | Massilia umbonata |
| 152 | 4320922 | 4321155 | + | NZ_CP060723.1 | Pedobacter roseus |
| 153 | 3191487 | 3191726 | - | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 154 | 1093282 | 1093518 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 155 | 5358186 | 5358422 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 156 | 3007513 | 3007749 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 157 | 2405984 | 2406220 | + | NZ_CP046904.1 | Massilia flava |
| 158 | 952751 | 952987 | - | NZ_CP036401.1 | Massilia albidiflava |
| 159 | 512310 | 512546 | + | NZ_CP032489.1 | Arachidicoccus soli |
| 160 | 1267428 | 1267664 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 161 | 754615 | 754851 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 162 | 4191813 | 4192046 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 163 | 1990745 | 1990981 | - | NZ_CP048113.1 | Chitinophaga agri |
| 164 | 3804556 | 3804792 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 165 | 204845 | 205081 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 166 | 1701135 | 1701368 | - | NZ_LR027382.1 | Alistipes megaguti |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN877293.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00448.24 | 0.75 | 125 | 546 | same-strand | SRP54-type protein, GTPase domain |
| 2 | PF02881.21 | 0.75 | 125 | 546 | same-strand | SRP54-type protein, helical bundle domain |
| 3 | PF14128.8 | 0.87 | 144 | 219.5 | same-strand | Domain of unknown function (DUF4295) |
| 4 | PF00471.22 | 0.98 | 163 | 21 | same-strand | Ribosomal protein L33 |
++ More..