Result : Q601K5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S17 |
| NCBI Accession ID | AE017332.1 |
| Organism | Mycoplasma hyopneumoniae (strain 232) |
| Left | 234307 |
| Right | 234603 |
| Strand | + |
| Nucleotide Sequence | GTGCTGAAAATGAATAATTTAACTTTAGAAAAAAAAGCTCAAACCCGAAATCTTCGGAAAACTTTACAAGGAATTGTCATTAGAACCTCCCCAAAAACAATTATGGTTGAAGTTGAAACTGCCTATAAACATAAACTTTATGCAAAAAGGTTTAAAAAGCGCAAAAAATTTAACACTCACGATGAAAAAAACCTGGCAGAAGTAGGTGATTTTGTCAAAATTGCCGAATGTCGGCCAATTTCAAAGACAAAACACTTCCGTTTAGTCGAAGTCTTACAGAAAAAAGGAGAAATCTAG |
| Sequence | MLKMNNLTLEKKAQTRNLRKTLQGIVIRTSPKTIMVEVETAYKHKLYAKRFKKRKKFNTHDEKNLAEVGDFVKIAECRPISKTKHFRLVEVLQKKGEI |
| Source of smORF | Swiss-Prot |
| Function | One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_01345}. |
| Pubmed ID | 15489423 |
| Domain | CDD:412327 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q601K5 |
| ORF Length (Amino Acid) | 98 |
++ More..
| Conservation Analysis |
No. of Species: 333
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 146340 | 146636 | + | NC_021283.1 | Mycoplasma hyopneumoniae 168-L |
| 2 | 388853 | 389158 | + | NZ_CP024161.1 | Mycoplasma dispar |
| 3 | 561619 | 561915 | - | NZ_CP007585.1 | Mycoplasma flocculare ATCC 27399 |
| 4 | 423473 | 423763 | - | NZ_CP007154.1 | Mycoplasma bovoculi M165/69 |
| 5 | 486577 | 486822 | + | NZ_CP034044.1 | Mycoplasma struthionis |
| 6 | 16739 | 17014 | + | NZ_LR214938.2 | Mycoplasma salivarium |
| 7 | 765293 | 765562 | + | NZ_LR215039.1 | Mycoplasmopsis columboralis |
| 8 | 552169 | 552441 | - | NZ_LR215036.1 | Mycoplasmopsis citelli |
| 9 | 862492 | 862770 | + | NZ_LR214951.1 | Mycoplasma neurolyticum |
| 10 | 138253 | 138525 | + | NZ_LR215042.1 | Mycoplasmopsis meleagridis |
| 11 | 293997 | 294263 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 12 | 344046 | 344288 | - | NZ_LR215043.1 | Mycoplasmopsis columbinasalis |
| 13 | 128628 | 128897 | + | NC_014014.1 | Mycoplasma crocodyli MP145 |
| 14 | 294421 | 294678 | + | NZ_CP013197.1 | Spiroplasma citri |
| 15 | 3190494 | 3190754 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 16 | 249311 | 249580 | + | NZ_AP018940.1 | Mycoplasmopsis californica |
| 17 | 579490 | 579759 | - | NZ_AP022325.1 | Mycoplasmopsis felis |
| 18 | 1066007 | 1066246 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 19 | 193493 | 193759 | + | NZ_LR214986.1 | Mycoplasmopsis cynos |
| 20 | 551467 | 551736 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 21 | 744533 | 744775 | - | NZ_CP029258.1 | Mycoplasmopsis synoviae |
| 22 | 7397608 | 7397847 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 23 | 477600 | 477860 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 24 | 1496103 | 1496378 | - | NZ_CP011390.1 | Flavisolibacter tropicus |
| 25 | 1004752 | 1005024 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 26 | 559292 | 559561 | - | NZ_CP040825.1 | Mycoplasma nasistruthionis |
| 27 | 144824 | 145090 | + | NZ_LS991951.1 | Mycoplasmopsis edwardii |
| 28 | 1422032 | 1422298 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 29 | 6279430 | 6279669 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 30 | 1126064 | 1126303 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 31 | 6432735 | 6432974 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 32 | 1148390 | 1148629 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 33 | 7133657 | 7133896 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 34 | 964503 | 964769 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 35 | 160583 | 160849 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 36 | 124378 | 124641 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 37 | 4496529 | 4496792 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 38 | 247937 | 248200 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 39 | 503958 | 504218 | - | NZ_LR134293.1 | Streptococcus canis |
| 40 | 506756 | 507022 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 41 | 85975 | 86235 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 42 | 1792351 | 1792617 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 43 | 194951 | 195217 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 44 | 818388 | 818657 | + | NZ_CP034841.1 | Mycoplasmopsis phocirhinis |
| 45 | 204124 | 204387 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 46 | 1532268 | 1532531 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 47 | 664986 | 665249 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 48 | 781122 | 781361 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 49 | 746465 | 746731 | - | NZ_CP011368.1 | Mycoplasmopsis canis |
| 50 | 143454 | 143717 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 51 | 3332241 | 3332504 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 52 | 3960916 | 3961158 | - | NZ_CP032157.1 | Paraflavitalea soli |
| 53 | 5698915 | 5699154 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 54 | 387551 | 387802 | + | NZ_CP028106.1 | Fusobacterium gonidiaformans ATCC 25563 |
| 55 | 226838 | 227095 | + | NZ_CP010899.1 | Spiroplasma kunkelii CR2-3x |
| 56 | 6154438 | 6154677 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 57 | 1522008 | 1522274 | - | NZ_CP014161.1 | Aerococcus urinae |
| 58 | 2445356 | 2445598 | - | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 59 | 95905 | 96165 | + | NZ_CP029491.1 | Streptococcus sobrinus |
| 60 | 132843 | 133106 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 61 | 132463 | 132702 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 62 | 2826115 | 2826354 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 63 | 140633 | 140872 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 64 | 2263659 | 2263898 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 65 | 1752005 | 1752268 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 66 | 56348 | 56611 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 67 | 144082 | 144345 | + | NZ_CP016538.2 | Planococcus maritimus |
| 68 | 143923 | 144186 | + | NZ_CP059540.1 | Planococcus maritimus |
| 69 | 3268890 | 3269153 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 70 | 1197229 | 1197471 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 71 | 3747032 | 3747274 | - | NZ_CP032489.1 | Arachidicoccus soli |
| 72 | 3174419 | 3174700 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 73 | 135395 | 135658 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 74 | 236438 | 236689 | - | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 75 | 345658 | 345897 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 76 | 478979 | 479218 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 77 | 3096054 | 3096293 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 78 | 282128 | 282394 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 79 | 4687481 | 4687720 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 80 | 5017097 | 5017336 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 81 | 4391232 | 4391471 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 82 | 628777 | 629034 | - | NZ_CP031088.1 | Spiroplasma phoeniceum P40 |
| 83 | 5294549 | 5294788 | - | NZ_CP009288.1 | Paenibacillus durus |
| 84 | 4672350 | 4672592 | + | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 85 | 2587610 | 2587870 | - | NZ_AP019309.1 | Intestinibaculum porci |
| 86 | 4582134 | 4582397 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 87 | 280765 | 281025 | - | NZ_LR214972.1 | Mycoplasmopsis bovirhinis |
| 88 | 3725343 | 3725606 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 89 | 2652397 | 2652639 | + | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 90 | 134832 | 135095 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 91 | 396025 | 396297 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 92 | 1370105 | 1370368 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 93 | 1438146 | 1438400 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 94 | 132779 | 133042 | + | NZ_LS483476.1 | Lederbergia lentus |
| 95 | 8373312 | 8373575 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 96 | 415867 | 416127 | + | NZ_CP011391.1 | Faecalibaculum rodentium |
| 97 | 1941772 | 1942035 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 98 | 3986954 | 3987193 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 99 | 2236614 | 2236877 | + | NZ_CP014022.1 | Staphylococcus lugdunensis |
| 100 | 1282905 | 1283168 | + | NZ_CP027770.1 | Staphylococcus felis |
| 101 | 389248 | 389517 | - | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 102 | 141992 | 142255 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 103 | 59771 | 60031 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 104 | 1169094 | 1169354 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 105 | 2768545 | 2768850 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 106 | 263773 | 264030 | + | NZ_CP013195.1 | Prevotella enoeca |
| 107 | 6388990 | 6389253 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 108 | 183809 | 184051 | + | NZ_AP017422.1 | Filimonas lacunae |
| 109 | 1725719 | 1725982 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 110 | 2268883 | 2269146 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 111 | 2313023 | 2313286 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 112 | 145856 | 146119 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 113 | 2170845 | 2171105 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 114 | 205756 | 206019 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 115 | 712616 | 712879 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 116 | 1434712 | 1434975 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 117 | 758295 | 758558 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 118 | 790497 | 790736 | + | NZ_AP018587.1 | Staphylococcus caprae |
| 119 | 899859 | 900122 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 120 | 2198013 | 2198276 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 121 | 2830655 | 2830912 | - | NZ_LR134384.1 | Prevotella oris |
| 122 | 315842 | 316138 | + | NZ_CP030103.1 | Mycoplasma cloacale |
| 123 | 628241 | 628510 | + | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 124 | 2344289 | 2344552 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 125 | 4130655 | 4130918 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 126 | 254717 | 254980 | + | NZ_CP053989.1 | Niallia circulans |
| 127 | 69189 | 69449 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 128 | 80897 | 81157 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 129 | 1473955 | 1474221 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 130 | 1564881 | 1565147 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 131 | 5811314 | 5811556 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 132 | 1766779 | 1767042 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 133 | 708899 | 709162 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 134 | 648430 | 648693 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 135 | 257435 | 257701 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 136 | 759322 | 759585 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 137 | 2167409 | 2167672 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 138 | 2120932 | 2121198 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 139 | 315050 | 315289 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 140 | 110035 | 110295 | + | NZ_LS483343.1 | Streptococcus ferus |
| 141 | 2429778 | 2430041 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 142 | 132050 | 132313 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 143 | 2948713 | 2948952 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 144 | 1058859 | 1059122 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 145 | 267163 | 267420 | + | NZ_CP002082.1 | Spiroplasma mirum ATCC 29335 |
| 146 | 293517 | 293774 | + | NZ_CP011855.1 | Spiroplasma atrichopogonis |
| 147 | 446844 | 447101 | + | NC_014370.1 | Prevotella melaninogenica ATCC 25845 |
| 148 | 1147893 | 1148150 | - | NZ_CP012074.1 | Prevotella fusca JCM 17724 |
| 149 | 1368933 | 1369199 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 150 | 726325 | 726588 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 151 | 793017 | 793280 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 152 | 152020 | 152283 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 153 | 224062 | 224319 | + | NC_021280.1 | Spiroplasma chrysopicola DF-1 |
| 154 | 234481 | 234738 | + | NZ_CP024870.1 | Spiroplasma clarkii |
| 155 | 303660 | 303938 | + | NC_006908.1 | Mycoplasma mobile 163K |
| 156 | 2442751 | 2443014 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 157 | 2442690 | 2442953 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 158 | 1780887 | 1781150 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 159 | 2979318 | 2979581 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 160 | 434909 | 435172 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 161 | 246929 | 247186 | + | NC_021284.1 | Spiroplasma syrphidicola EA-1 |
| 162 | 1885634 | 1885894 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 163 | 2059060 | 2059326 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 164 | 3989174 | 3989437 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 165 | 6055718 | 6055981 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 166 | 4841846 | 4842085 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 167 | 2691282 | 2691545 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 168 | 814624 | 814863 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 169 | 772960 | 773223 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 170 | 613946 | 614209 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 171 | 1808314 | 1808580 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 172 | 143146 | 143409 | + | NZ_CP012024.1 | Bacillus smithii |
| 173 | 1199061 | 1199318 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 174 | 151492 | 151755 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 175 | 1511384 | 1511647 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 176 | 471532 | 471798 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 177 | 104896 | 105162 | + | NZ_CP017326.1 | Weissella soli |
| 178 | 311141 | 311407 | + | NZ_CP027563.1 | Weissella confusa |
| 179 | 4740243 | 4740506 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 180 | 310461 | 310718 | + | NZ_CP011856.1 | Spiroplasma eriocheiris |
| 181 | 437018 | 437275 | + | NZ_CP023863.1 | Prevotella jejuni |
| 182 | 2694502 | 2694765 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 183 | 1845845 | 1846102 | - | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 184 | 182056 | 182322 | + | NZ_CP061835.1 | Weissella viridescens |
| 185 | 1033144 | 1033443 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 186 | 1176292 | 1176549 | - | NZ_CP025057.1 | Spiroplasma floricola 23-6 |
| 187 | 2401615 | 2401878 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 188 | 2854321 | 2854602 | - | NZ_CP033325.1 | Georgenia faecalis |
| 189 | 1714661 | 1714921 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 190 | 1779020 | 1779280 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 191 | 90183 | 90443 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 192 | 790288 | 790545 | - | NZ_CP007520.1 | Mycoplasma yeatsii GM274B |
| 193 | 2531519 | 2531776 | - | NC_014033.1 | Prevotella ruminicola 23 |
| 194 | 249717 | 249980 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 195 | 1137348 | 1137614 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 196 | 1976952 | 1977215 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 197 | 66866 | 67126 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 198 | 1839026 | 1839286 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 199 | 1857203 | 1857463 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 200 | 75951 | 76211 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 201 | 874544 | 874804 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 202 | 810340 | 810597 | - | NZ_CP025543.1 | Spiroplasma monobiae MQ-1 |
| 203 | 2262703 | 2262969 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 204 | 1775353 | 1775592 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 205 | 427861 | 428100 | + | NZ_CP014164.1 | Aerococcus viridans |
| 206 | 36958 | 37224 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 207 | 1382252 | 1382536 | - | NZ_CP049253.1 | Microbacterium amylolyticum |
| 208 | 916866 | 917129 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 209 | 1807702 | 1807941 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 210 | 849573 | 849830 | - | NC_021833.1 | Spiroplasma diminutum CUAS-1 |
| 211 | 672828 | 673088 | + | NZ_CP043405.1 | Streptococcus ratti |
| 212 | 1677410 | 1677661 | + | NZ_CP024699.1 | Fusobacterium pseudoperiodonticum |
| 213 | 517847 | 518098 | + | NZ_CP068114.1 | Fusobacterium canifelinum |
| 214 | 569480 | 569731 | + | NZ_CP013336.1 | Fusobacterium hwasookii ChDC F206 |
| 215 | 430163 | 430414 | + | NZ_LN831027.1 | Fusobacterium nucleatum subsp. polymorphum |
| 216 | 2297549 | 2297815 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 217 | 1849028 | 1849294 | - | NC_016940.1 | Saprospira grandis str. Lewin |
| 218 | 3065654 | 3065935 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 219 | 1082312 | 1082569 | - | NZ_CP012622.1 | Spiroplasma cantharicola |
| 220 | 204800 | 205066 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 221 | 3950137 | 3950391 | - | NZ_CP019870.1 | Clostridioides difficile |
| 222 | 111316 | 111576 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 223 | 1483911 | 1484171 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 224 | 1737667 | 1737954 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 225 | 2118184 | 2118447 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 226 | 2577873 | 2578136 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 227 | 2435834 | 2436097 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 228 | 132497 | 132736 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 229 | 566735 | 567022 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 230 | 258088 | 258348 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 231 | 403800 | 404057 | + | NZ_CP031376.1 | Spiroplasma alleghenense |
| 232 | 111546 | 111812 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 233 | 652336 | 652611 | + | NZ_CP030141.1 | Mycoplasmopsis anatis |
| 234 | 1077990 | 1078247 | - | NZ_CP012357.1 | Spiroplasma litorale |
| 235 | 987485 | 987730 | - | NC_021846.1 | Spiroplasma taiwanense CT-1 |
| 236 | 2376690 | 2376962 | - | NZ_CP023434.1 | Suicoccus acidiformans |
| 237 | 3631077 | 3631340 | - | NZ_CP033433.1 | Cohnella candidum |
| 238 | 3856319 | 3856576 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 239 | 765978 | 766232 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 240 | 1753241 | 1753501 | + | NZ_CP013237.1 | Streptococcus mutans |
| 241 | 161280 | 161543 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 242 | 2610408 | 2610647 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 243 | 152937 | 153194 | + | NZ_CP024411.1 | Mesoplasma entomophilum |
| 244 | 1751484 | 1751744 | - | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 245 | 1759746 | 1760006 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 246 | 1971234 | 1971494 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 247 | 448134 | 448394 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 248 | 493666 | 493926 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 249 | 78221 | 78481 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 250 | 77076 | 77336 | + | NC_012924.1 | Streptococcus suis SC84 |
| 251 | 2033818 | 2034078 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 252 | 295694 | 295954 | + | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 253 | 490114 | 490374 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 254 | 847545 | 847805 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 255 | 4575583 | 4575837 | - | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 256 | 1832464 | 1832724 | - | NZ_LT906439.1 | Streptococcus merionis |
| 257 | 850913 | 851170 | - | NZ_CP006934.1 | Spiroplasma sabaudiense Ar-1343 |
| 258 | 3754853 | 3755107 | - | NC_014624.2 | Eubacterium callanderi |
| 259 | 1381072 | 1381326 | + | NZ_CP019962.1 | Eubacterium limosum |
| 260 | 2162137 | 2162391 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
| 261 | 2538851 | 2539114 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 262 | 644593 | 644865 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 263 | 152056 | 152313 | + | NC_006055.1 | Mesoplasma florum L1 |
| 264 | 150227 | 150484 | + | NZ_CP024969.1 | Mesoplasma tabanidae |
| 265 | 274522 | 274788 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 266 | 1925167 | 1925418 | - | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 267 | 272287 | 272553 | + | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 268 | 1263982 | 1264239 | - | NZ_CP043026.1 | Spiroplasma chinense |
| 269 | 2017769 | 2018035 | - | NZ_CP007514.1 | Rubrobacter radiotolerans |
| 270 | 2171098 | 2171352 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 271 | 433269 | 433535 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 272 | 244448 | 244714 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 273 | 719895 | 720170 | + | NZ_CP041664.1 | Mycoplasma anserisalpingitidis |
| 274 | 5868812 | 5869069 | + | NZ_CP048113.1 | Chitinophaga agri |
| 275 | 174224 | 174481 | + | NZ_CP023173.1 | Mesoplasma chauliocola |
| 276 | 151111 | 151374 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 277 | 1053569 | 1053826 | - | NZ_CP006681.1 | Spiroplasma culicicola AES-1 |
| 278 | 1959551 | 1959805 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 279 | 808776 | 809033 | - | NC_007633.1 | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
| 280 | 806670 | 806927 | - | NZ_CP001668.1 | Mycoplasma mycoides subsp. capri str. GM12 |
| 281 | 1912295 | 1912555 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 282 | 1377374 | 1377640 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 283 | 167640 | 167903 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 284 | 860517 | 860774 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 285 | 1089479 | 1089736 | - | NZ_CP022535.1 | Spiroplasma corruscae |
| 286 | 1179089 | 1179346 | - | NZ_CP012328.1 | Spiroplasma turonicum |
| 287 | 1939321 | 1939575 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 288 | 2006648 | 2006902 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 289 | 2491452 | 2491706 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 290 | 1279699 | 1279977 | + | NZ_LR134363.1 | Actinomyces slackii |
| 291 | 628973 | 629248 | + | NZ_CP012117.1 | Dermabacter vaginalis |
| 292 | 979642 | 979899 | - | NZ_CP017015.1 | Spiroplasma helicoides |
| 293 | 150275 | 150532 | + | NZ_CP025257.1 | Mesoplasma syrphidae |
| 294 | 1969241 | 1969498 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 295 | 1983397 | 1983651 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 296 | 241242 | 241529 | + | NZ_CP029844.1 | Blattabacterium clevelandi |
| 297 | 452873 | 453133 | + | NZ_LR215048.1 | Acholeplasma axanthum |
| 298 | 31408 | 31665 | + | NZ_CP023668.1 | Mesoplasma lactucae ATCC 49193 |
| 299 | 636907 | 637161 | + | NZ_CP009761.1 | Parvimonas micra |
| 300 | 1098010 | 1098276 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 301 | 3429937 | 3430191 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 302 | 503645 | 503899 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 303 | 32287 | 32541 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 304 | 360174 | 360431 | + | NZ_CP024963.1 | Entomoplasma luminosum |
| 305 | 1277568 | 1277834 | - | NZ_CP029476.1 | Lactobacillus apis |
| 306 | 175108 | 175368 | - | NZ_CP028811.1 | Flavobacterium magnum |
| 307 | 877596 | 877853 | - | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 308 | 1937181 | 1937435 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 309 | 5089483 | 5089737 | - | NZ_CP039126.1 | Blautia producta |
| 310 | 2571555 | 2571809 | + | NZ_CP070062.1 | Coprococcus comes |
| 311 | 3243698 | 3243952 | - | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 312 | 368778 | 369020 | + | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 313 | 4109929 | 4110213 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 314 | 271219 | 271473 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 315 | 1346562 | 1346822 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 316 | 2586276 | 2586557 | + | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 317 | 1172354 | 1172611 | - | NZ_CP046276.1 | Spiroplasma tabanidicola |
| 318 | 158089 | 158346 | + | NZ_CP024964.1 | Entomoplasma melaleucae |
| 319 | 2108160 | 2108414 | - | NC_014654.1 | Halanaerobium hydrogeniformans |
| 320 | 3266466 | 3266720 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 321 | 1065955 | 1066212 | - | NZ_CP038013.1 | Spiroplasma gladiatoris |
| 322 | 2313712 | 2313954 | + | NZ_CP023777.1 | Chitinophaga caeni |
| 323 | 6715352 | 6715606 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 324 | 1349097 | 1349351 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 325 | 3970978 | 3971232 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 326 | 836845 | 837099 | + | NZ_CP030848.1 | Sphingobacterium hotanense |
| 327 | 1123774 | 1124028 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 328 | 1583360 | 1583644 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 329 | 517932 | 518186 | + | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 330 | 1080606 | 1080848 | + | NZ_CP018099.1 | Caldithrix abyssi DSM 13497 |
| 331 | 1174582 | 1174845 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 332 | 239903 | 240157 | - | NC_018178.1 | Melioribacter roseus P3M-2 |
| 333 | 345840 | 346085 | + | NZ_CP040463.1 | Caminibacter mediatlanticus TB-2 |
| 334 | 1024581 | 1024838 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP018180.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00189.22 | 0.92 | 307 | 661.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 2 | PF07650.19 | 0.86 | 288 | 661 | same-strand | KH domain |
| 3 | PF00831.25 | 0.97 | 324 | 24 | same-strand | Ribosomal L29 protein |
| 4 | PF00238.21 | 0.97 | 322 | 31 | same-strand | Ribosomal protein L14p/L23e |
| 5 | PF17136.6 | 0.9 | 299 | 445.5 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 6 | PF00467.31 | 0.88 | 293 | 441.0 | same-strand | KOW motif |
| 7 | PF00281.21 | 0.97 | 324 | 783 | same-strand | Ribosomal protein L5 |
| 8 | PF00410.21 | 0.89 | 298 | 1572 | same-strand | Ribosomal protein S8 |
| 9 | PF00673.23 | 0.91 | 302 | 785 | same-strand | ribosomal L5P family C-terminus |
| 10 | PF00237.21 | 0.96 | 320 | 1337 | same-strand | Ribosomal protein L22p/L17e |
| 11 | PF00253.23 | 0.82 | 272 | 1344 | same-strand | Ribosomal protein S14p/S29e |
| 12 | PF00203.23 | 0.81 | 271 | 1707.5 | same-strand | Ribosomal protein S19 |
| 13 | PF00252.20 | 0.82 | 273 | 226.0 | same-strand | Ribosomal protein L16p/L10e |
++ More..