ProsmORF-pred
Result : Q5ZYN5
Protein Information
Information Type Description
Protein name 50S ribosomal protein L29
NCBI Accession ID AE017354.1
Organism Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Left 387383
Right 387577
Strand +
Nucleotide Sequence ATGAAAAAAATAGATGAATTGCGCAATATGTCAGTTGAGGAATTGCAAAATGAATTGCTTTCATTACGTAAAGATCAATTTAATTTACGAATGAAAAAAGCAAGTGGCTCACTAGATAAAACACATCTGATCACTATGGTGCGTAAGTCAGTGGCAAAAGTTAAAACAATCTTGACTGAAAAGGCAGGTAAGTGA
Sequence MKKIDELRNMSVEELQNELLSLRKDQFNLRMKKASGSLDKTHLITMVRKSVAKVKTILTEKAGK
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure.
Pubmed ID 15448271
Domain CDD:415815
Functional Category Ribosomal_protein
Uniprot ID Q5ZYN5
ORF Length (Amino Acid) 64
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 490
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 387382 387576 + NZ_CP013742.1 Legionella pneumophila
2 655897 656091 + NZ_LT906442.1 Legionella waltersii
3 4474 4668 + NZ_CP025491.2 Legionella sainthelensi
4 3083983 3084177 - NZ_LN614827.1 Legionella fallonii LLAP-10
5 259303 259509 + NZ_LT906451.1 Legionella lansingensis
6 340920 341123 + NZ_LN681225.1 Legionella hackeliae
7 5730 5924 - NZ_LR134417.1 Legionella adelaidensis
8 2641251 2641457 + NZ_LR134374.1 Legionella spiritensis
9 2878335 2878541 - NZ_CP038254.1 Legionella israelensis
10 567706 567900 + NC_013861.1 Legionella longbeachae NSW150
11 2966226 2966429 - NZ_CP016397.1 Legionella clemsonensis
12 449812 450018 + NZ_LN614830.1 Tatlockia micdadei
13 4232379 4232570 - NZ_CP038498.1 Pectobacterium punjabense
14 4255203 4255394 - NZ_CP050150.1 Hafnia alvei
15 2139388 2139579 + NZ_CP047495.1 Pectobacterium brasiliense
16 481167 481358 + NZ_CP051652.1 Pectobacterium carotovorum
17 522216 522407 + NZ_CP065044.1 Pectobacterium aroidearum
18 4392818 4393009 - NZ_CP034938.1 Pectobacterium odoriferum
19 3205623 3205814 - NZ_CP017482.1 Pectobacterium polaris
20 4737436 4737627 + NZ_CP015749.1 Pectobacterium parmentieri
21 1134004 1134195 - NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
22 477070 477261 + NZ_CP042220.2 Dickeya poaceiphila
23 4043447 4043638 - NZ_LT615367.1 Dickeya aquatica
24 455021 455212 + NC_012880.1 Musicola paradisiaca Ech703
25 4187248 4187439 - NZ_CP025799.1 Dickeya zeae
26 380343 380534 + NC_012912.1 Dickeya chrysanthemi Ech1591
27 4387154 4387345 - NC_014500.1 Dickeya dadantii 3937
28 3318774 3318965 + NZ_CP009460.1 Dickeya fangzhongdai
29 1643860 1644051 - NZ_CP015137.1 Dickeya solani IPO 2222
30 2048337 2048528 - NC_006512.1 Idiomarina loihiensis L2TR
31 4402280 4402471 - NZ_CP009125.1 Pectobacterium atrosepticum
32 5493839 5494030 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
33 108042 108233 + NZ_CP015581.1 Tatumella citrea
34 5639164 5639355 - NZ_CP048878.1 Spartinivicinus ruber
35 3624989 3625180 - NZ_AP014545.1 Amphritea japonica ATCC BAA-1530
36 3932028 3932219 - NZ_CP065435.1 Halomonas sp. SS10-MC5
37 2056119 2056310 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
38 334585 334776 - NZ_CP046531.1 Mannheimia ovis
39 538683 538874 + NZ_CP061280.1 Mannheimia bovis
40 363087 363278 - NZ_CP055305.1 Mannheimia pernigra
41 1593665 1593856 + NC_011852.1 Glaesserella parasuis SH0165
42 2548405 2548596 - NC_021883.1 Mannheimia haemolytica USMARC_2286
43 1021521 1021712 + NZ_LR134510.1 Actinobacillus delphinicola
44 5303612 5303803 - NZ_CP037952.1 Parashewanella spongiae
45 697273 697464 + NZ_CP047698.1 Pseudomonas knackmussii
46 4762928 4763119 - NC_002516.2 Pseudomonas aeruginosa PAO1
47 6417623 6417814 - NZ_CP048833.1 Pseudomonas multiresinivorans
48 168231 168422 + NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188
49 519911 520072 - NZ_CP042382.1 Pistricoccus aurantiacus
50 6340753 6340929 - NC_007645.1 Hahella chejuensis KCTC 2396
51 824062 824223 + NZ_CP014158.1 Pseudomonas citronellolis
52 3789526 3789717 - NZ_CP020931.1 Marinobacter salarius
53 3304652 3304846 - NZ_CP043869.1 Neptunomonas concharum
54 3639466 3639657 - NZ_CP021435.1 Halomonas beimenensis
55 3262085 3262258 + NZ_CP037953.1 Permianibacter aggregans
56 808703 808894 + NZ_CP043042.1 Marinobacter fonticola
57 629258 629449 + NZ_CP043311.1 Pseudomonas lalkuanensis
58 4013767 4013958 - NZ_CP037951.1 Parashewanella tropica
59 390625 390816 + NC_017506.1 Marinobacter adhaerens HP15
60 1967510 1967701 + NZ_CP018139.1 Halomonas aestuarii
61 288938 289129 + NC_014532.2 Halomonas elongata DSM 2581
62 750673 750864 + NZ_CP021425.1 Oleiphilus messinensis
63 241847 242038 + NZ_CP022358.1 Shewanella bicestrii
64 2042885 2043076 + NZ_CP030753.1 Actinobacillus pleuropneumoniae
65 1917916 1918107 - NZ_CP007715.1 Actinobacillus equuli subsp. equuli
66 1912618 1912809 - NZ_CP009159.1 Actinobacillus suis ATCC 33415
67 983793 983984 - NZ_CP048812.1 Halomonas socia
68 588214 588405 + NZ_CP015029.1 Frederiksenia canicola
69 2014082 2014273 + NZ_LT906448.1 Pasteurella dagmatis
70 3956728 3956919 - NZ_CP011835.1 Azotobacter chroococcum
71 3419658 3419849 + NZ_CP045302.1 Azotobacter salinestris
72 2618803 2618994 + NZ_CP036200.1 Shewanella maritima
73 2171430 2171621 + NZ_CP046793.1 Vibrio metschnikovii
74 726455 726646 + NZ_CP011494.1 Marinobacter psychrophilus
75 132456 132647 + NZ_CP014226.1 Halomonas chromatireducens
76 19304 19495 + NZ_CP016180.1 Pasteurella skyensis
77 611350 611541 + NC_012560.1 Azotobacter vinelandii DJ
78 2620016 2620207 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
79 124994 125185 - NC_013456.1 Vibrio antiquarius
80 2996135 2996326 - NZ_CP031781.1 Vibrio parahaemolyticus
81 226556 226747 + NZ_CP069213.1 Shewanella litorisediminis
82 256398 256589 + NC_008700.1 Shewanella amazonensis SB2B
83 4415545 4415736 + NZ_CP020373.1 Shewanella khirikhana
84 4677727 4677918 - NZ_CP046378.1 Shewanella algae
85 2702241 2702432 - NZ_CP016414.1 Vibrio scophthalmi
86 1175029 1175208 - NZ_CP023559.1 Salinicola tamaricis
87 547287 547478 + NZ_CP031415.1 Saccharospirillum mangrovi
88 2674030 2674221 - NZ_CP017715.1 Marinobacter salinus
89 626761 626952 + NZ_AP014862.1 Pseudomonas furukawaii
90 1088540 1088731 + NZ_CP028926.1 Pasteurella multocida
91 4174712 4174903 + NZ_CP009533.1 Pseudomonas rhizosphaerae
92 771394 771585 + NZ_LR215729.2 Pseudomonas marincola
93 2908038 2908229 - NZ_CP031146.1 Pseudomonas plecoglossicida
94 691766 691957 + NZ_CP046621.1 Pseudomonas alkylphenolica
95 5194868 5195059 - NZ_CP071706.1 Pseudomonas donghuensis
96 5180017 5180208 - NZ_CP024159.1 Pseudomonas mosselii
97 5319553 5319744 - NZ_CP054205.1 Pseudomonas rhodesiae
98 520551 520742 + NC_008027.1 Pseudomonas entomophila L48
99 803915 804106 + NZ_CP070503.1 Pseudomonas atacamensis
100 5250410 5250601 - NZ_CP027723.1 Pseudomonas orientalis
101 612519 612710 + NZ_CP022562.1 Pseudomonas monteilii
102 5315126 5315317 - NZ_CP007039.1 Pseudomonas cichorii JBC1
103 5320015 5320206 - NZ_CP068034.2 Pseudomonas syringae
104 5441000 5441191 - NZ_CP023272.1 Pseudomonas lurida
105 513419 513610 + NZ_CP067022.1 Pseudomonas cannabina pv. alisalensis
106 2870130 2870321 - NZ_CP014262.1 Pseudomonas corrugata
107 5398201 5398392 - NZ_CP042804.1 Pseudomonas amygdali pv. tabaci str. ATCC 11528
108 5478939 5479130 - NZ_CP010896.1 Pseudomonas simiae
109 580601 580792 + NC_021505.1 Pseudomonas putida NBRC 14164
110 5659023 5659214 + NZ_CP009365.1 Pseudomonas soli
111 5640961 5641152 - NZ_CP029608.1 Pseudomonas kribbensis
112 5765492 5765683 - NZ_CP056030.1 Pseudomonas eucalypticola
113 6006061 6006252 - NZ_CP014205.2 Pseudomonas glycinae
114 696033 696224 + NC_004578.1 Pseudomonas syringae pv. tomato str. DC3000
115 5853434 5853625 - NZ_CP027756.1 Pseudomonas synxantha
116 5847610 5847801 - NZ_CP062253.1 Pseudomonas gozinkensis
117 5857110 5857301 - NZ_CP062252.1 Pseudomonas allokribbensis
118 6011990 6012181 - NZ_CP035088.1 Pseudomonas viciae
119 6208613 6208804 - NZ_CP051487.1 Pseudomonas umsongensis
120 4900772 4900963 + NZ_CP048810.1 Pseudomonas bijieensis
121 6059597 6059788 - NZ_CP034725.1 Pseudomonas brassicacearum
122 4619420 4619611 + NZ_CP005960.1 Pseudomonas mandelii JR-1
123 6119084 6119275 - NZ_CP061079.1 Pseudomonas chlororaphis
124 6184825 6185016 - NZ_CP018420.1 Pseudomonas veronii
125 439757 439948 + NZ_CP012400.2 Pseudomonas yamanorum
126 6151156 6151347 - NZ_LS999205.1 Pseudomonas protegens CHA0
127 715541 715732 + NZ_AP022642.1 Pseudomonas otitidis
128 127537 127698 + NC_012691.1 Tolumonas auensis DSM 9187
129 4434807 4434998 - NZ_CP041036.1 Shewanella polaris
130 2986162 2986353 - NZ_CP044060.1 Aeromonas veronii
131 3242475 3242666 - NZ_CP065745.1 Aeromonas allosaccharophila
132 4452966 4453157 - NZ_AP022188.1 Aeromonas media
133 331747 331938 + NZ_CP050851.1 Aeromonas hydrophila
134 1967454 1967645 - NZ_CP016604.1 Otariodibacter oris
135 616776 616967 + NZ_LS483443.1 Aggregatibacter segnis ATCC 33393
136 626968 627159 + NZ_CP062158.2 Pseudomonas lundensis
137 5056524 5056715 + NZ_CP012676.1 Pseudomonas versuta
138 1241827 1242018 + NZ_CP049044.1 Pseudomonas psychrophila
139 641008 641190 + NZ_AP018724.1 Sulfurivermis fontis
140 2255780 2255971 + NZ_CP019343.1 Oceanicoccus sagamiensis
141 130896 131087 - NZ_LR134167.1 Avibacterium volantium
142 87788 87979 + NZ_CP018804.1 Histophilus somni
143 4750272 4750463 - NC_014012.1 Shewanella violacea DSS12
144 407573 407764 + NZ_CP014782.1 Shewanella psychrophila
145 610734 610925 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
146 2323492 2323683 + NZ_CP041660.1 Catenovulum sediminis
147 172416 172607 + NZ_CP022272.1 Shewanella marisflavi
148 183724 183915 + NC_009092.1 Shewanella loihica PV-4
149 3678880 3679071 - NC_015559.1 Marinomonas posidonica IVIA-Po-181
150 491235 491426 + NZ_CP017689.1 Thalassotalea crassostreae
151 200815 201006 + NC_007954.1 Shewanella denitrificans OS217
152 5020391 5020582 - NC_010334.1 Shewanella halifaxensis HAW-EB4
153 2095817 2096008 + NC_011566.1 Shewanella piezotolerans WP3
154 5280155 5280346 - NC_009831.1 Shewanella sediminis HAW-EB3
155 5651808 5651999 - NC_010506.1 Shewanella woodyi ATCC 51908
156 2096378 2096569 - NZ_CP016605.1 Bisgaardia hudsonensis
157 1192459 1192650 - NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
158 214926 215117 + NC_009901.1 Shewanella pealeana ATCC 700345
159 303456 303647 + NZ_CP031416.1 Gallaecimonas mangrovi
160 6025854 6026045 - NZ_CP007142.1 Gynuella sunshinyii YC6258
161 427260 427451 + NZ_CP034015.1 Shewanella livingstonensis
162 175062 175253 + NC_008345.1 Shewanella frigidimarina NCIMB 400
163 4742284 4742475 - NZ_CP020472.1 Shewanella japonica
164 252589 252780 + NC_016901.1 Shewanella baltica OS678
165 4296001 4296192 - NZ_LR134376.1 Aeromonas encheleia
166 3819190 3819381 + NZ_CP051883.1 Aeromonas salmonicida
167 697720 697911 + NZ_CP029206.1 Actinobacillus porcitonsillarum
168 620673 620864 + NZ_CP031093.1 Hydrocarboniclastica marina
169 3419826 3420017 + NZ_CP041783.1 Shewanella donghaensis
170 3434365 3434556 + NZ_CP031961.1 Pseudoalteromonas tunicata
171 330891 331082 + NZ_AP018933.1 Zymobacter palmae
172 270171 270362 + NZ_CP071325.1 Photobacterium ganghwense
173 2398076 2398255 - NZ_AP018725.1 Sulfuriflexus mobilis
174 1604196 1604387 - NZ_CP015031.1 Basfia succiniciproducens
175 2001829 2002020 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
176 167294 167485 + NZ_CP011041.1 Pseudoalteromonas tetraodonis
177 172239 172430 + NZ_CP011030.1 Pseudoalteromonas issachenkonii
178 180566 180757 + NZ_CP033065.1 Pseudoalteromonas agarivorans
179 248415 248606 + NZ_CP032090.1 Pseudoalteromonas donghaensis
180 183524 183715 + NZ_CP023464.1 Pseudoalteromonas atlantica
181 179328 179519 + NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
182 3442561 3442752 - NZ_CP047491.1 Microbulbifer hydrolyticus
183 233653 233814 + NZ_CP061941.1 Marinomonas algicola
184 3028214 3028405 - NZ_CP043420.1 Kushneria phosphatilytica
185 457645 457836 - NZ_CP022355.1 Paraphotobacterium marinum
186 1005022 1005216 + NC_014816.1 Asticcacaulis excentricus CB 48
187 1774564 1774755 - NZ_CP070273.1 Marinomonas foliarum
188 410243 410434 - NZ_LT906463.1 Haemophilus pittmaniae
189 306492 306683 + NZ_CP040021.1 Salinivibrio kushneri
190 3426311 3426502 - NZ_CP027523.1 Pseudoalteromonas carrageenovora
191 3589017 3589208 - NZ_CP040449.1 Aeromonas simiae
192 505241 505432 + NZ_CP014544.1 Zhongshania aliphaticivorans
193 619948 620139 + NZ_CP004387.1 Alcanivorax pacificus W11-5
194 4307903 4308079 - NZ_CP061081.1 Marinomonas arctica
195 205832 206023 - NZ_CP009610.1 Haemophilus influenzae
196 301461 301652 - NZ_LS483458.1 Haemophilus haemolyticus
197 216126 216317 - NZ_LS483429.1 Haemophilus aegyptius
198 3824373 3824564 - NZ_CP012621.1 Zobellella denitrificans
199 2013232 2013423 - NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
200 839766 839957 + NC_010995.1 Cellvibrio japonicus Ueda107
201 3513824 3514015 - NZ_CP019650.1 Microbulbifer agarilyticus
202 1577209 1577400 + NZ_CP014143.1 Microbulbifer aggregans
203 3843633 3843824 - NZ_CP054301.1 Marinomonas primoryensis
204 2626518 2626721 - NZ_CP017415.1 Acidihalobacter yilgarnenesis
205 905183 905374 + NZ_CP015425.1 [Haemophilus] ducreyi
206 587711 587902 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
207 3004677 3004862 - NZ_CP015249.1 Dokdonella koreensis DS-123
208 255866 256057 + NC_015276.1 Marinomonas mediterranea MMB-1
209 1713320 1713514 - NZ_LR699114.1 Aquicella lusitana
210 2475995 2476201 - NZ_CP054619.1 Azospirillum oryzae
211 3609109 3609300 - NC_020888.1 Thalassolituus oleivorans MIL-1
212 111909 112103 - NZ_CP072844.1 Psychrosphaera aestuarii
213 972016 972207 - NZ_CP014056.2 Grimontia hollisae
214 1386174 1386365 + NZ_CP007044.2 Chania multitudinisentens RB-25
215 2993080 2993256 + NZ_CP048711.1 Kineobactrum salinum
216 421894 422085 + NC_016041.1 Glaciecola nitratireducens FR1064
217 453034 453225 + NC_008260.1 Alcanivorax borkumensis SK2
218 311737 311928 + NZ_LR134373.1 Yersinia pseudotuberculosis
219 1264308 1264499 - NZ_CP007230.1 Yersinia similis
220 3561515 3561706 + NZ_CP045300.1 Kosakonia arachidis
221 4893153 4893344 - NZ_CP048784.1 Serratia liquefaciens
222 4937124 4937315 - NZ_LR134494.1 Serratia quinivorans
223 5009178 5009369 - NC_015567.1 Serratia plymuthica AS9
224 1315241 1315432 - NZ_CP011254.1 Serratia fonticola
225 1918174 1918365 + NZ_CP012362.1 Oblitimonas alkaliphila
226 4198178 4198369 - NC_018691.1 Alcanivorax dieselolei B5
227 1659886 1660074 - NC_022664.1 Spiribacter curvatus
228 418005 418196 + NZ_CP014322.1 Alteromonas addita
229 3728538 3728729 - NC_015554.1 Alteromonas naphthalenivorans
230 1929039 1929227 - NZ_CP045871.1 Litoricola lipolytica
231 3307349 3307549 - NZ_CP018171.1 Mesorhizobium oceanicum
232 761757 761945 - NZ_CP021323.1 Kushneria konosiri
233 2537556 2537744 + NZ_CP021358.1 Kushneria marisflavi
234 4806682 4806873 - NZ_LT906479.1 Serratia ficaria
235 2903104 2903295 + NZ_CP014136.1 Gibbsiella quercinecans
236 2993671 2993862 - NZ_CP023529.1 Lelliottia amnigena
237 4306684 4306875 - NC_015968.1 Enterobacter soli
238 4273281 4273472 - NZ_CP027986.1 Enterobacter sichuanensis
239 4396231 4396422 - NZ_CP009756.1 Enterobacter cloacae
240 454278 454469 + NZ_CP008849.1 Alteromonas australica
241 4032655 4032816 + NZ_CP067057.1 Rahnella aceris
242 369505 369696 + NZ_CP051183.1 Bermanella marisrubri
243 2251613 2251789 - NZ_CP046415.1 Guyparkeria halophila
244 483191 483382 + NZ_CP006569.1 Sodalis praecaptivus
245 361633 361824 + NZ_CP011797.1 Reinekea forsetii
246 1115439 1115630 - NZ_CP065640.1 Serratia rubidaea
247 1160693 1160857 + NZ_CP016268.1 Woeseia oceani
248 3612280 3612471 - NZ_CP034148.1 Pantoea agglomerans
249 459093 459284 + NZ_CP045720.1 Pantoea eucalypti
250 469229 469420 + NZ_CP038853.1 Pantoea vagans
251 3799569 3799760 + NZ_CP027107.1 Cronobacter sakazakii
252 226826 227017 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
253 3886917 3887108 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
254 3964272 3964463 - NZ_CP012264.1 Cronobacter condimenti 1330
255 80807 80998 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
256 4054161 4054352 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
257 408233 408424 + NZ_CP035129.1 Kosakonia cowanii
258 2693153 2693344 - NZ_CP016337.1 Kosakonia sacchari
259 4443214 4443405 - NZ_CP063425.1 Kosakonia pseudosacchari
260 711873 712064 - NZ_CP040428.1 Jejubacter calystegiae
261 425420 425611 + NZ_CP041247.1 Raoultella electrica
262 453854 454045 + NZ_CP014007.2 Kosakonia oryzae
263 1252813 1253004 - NZ_CP026047.1 Raoultella planticola
264 463759 463950 + NZ_CP046672.1 Raoultella ornithinolytica
265 4870195 4870386 - NZ_CP015113.1 Kosakonia radicincitans
266 4878006 4878197 - NZ_CP015839.1 Marinobacterium aestuarii
267 303270 303461 + NZ_CP046670.1 Alteromonas mediterranea
268 313484 313675 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
269 2525517 2525708 + NZ_CP011078.1 Yersinia ruckeri
270 449659 449850 + NZ_CP013990.1 Leclercia adecarboxylata
271 1182275 1182466 + NZ_CP020388.1 Pluralibacter gergoviae
272 981230 981421 + NZ_CP051548.1 Phytobacter diazotrophicus
273 5142160 5142351 + NZ_CP011602.1 Phytobacter ursingii
274 2466913 2467077 + NC_013960.1 Nitrosococcus halophilus Nc 4
275 4062580 4062771 - NC_013892.1 Xenorhabdus bovienii SS-2004
276 340192 340383 + NZ_CP071320.1 Serratia ureilytica
277 4070503 4070694 - NZ_CP016948.1 Serratia surfactantfaciens
278 4842405 4842596 - NZ_CP038662.1 Serratia nematodiphila
279 2025133 2025324 - NZ_AP019007.1 Enterobacter oligotrophicus
280 4199294 4199485 - NZ_AP022508.1 Enterobacter bugandensis
281 4292217 4292408 - NZ_CP017184.1 Enterobacter roggenkampii
282 240778 240969 + NZ_LR134201.1 Cedecea lapagei
283 3007416 3007607 + NZ_CP025034.2 Enterobacter sp. SGAir0187
284 2854778 2854969 - NZ_CP017279.1 Enterobacter ludwigii
285 4054494 4054685 + NZ_CP045769.1 Enterobacter cancerogenus
286 4628334 4628525 - NZ_CP043318.1 Enterobacter chengduensis
287 3486478 3486669 - NZ_FO704551.1 Xenorhabdus poinarii G6
288 275720 275911 + NZ_FO704550.1 Xenorhabdus doucetiae
289 3165816 3166007 - NZ_CP060401.1 Xenorhabdus nematophila
290 4192449 4192640 - NZ_CP072455.1 Xenorhabdus budapestensis
291 3161347 3161538 - NZ_CP016176.1 Xenorhabdus hominickii
292 2590352 2590543 - NZ_CP009787.1 Yersinia rohdei
293 3007426 3007617 + NZ_CP009781.1 Yersinia aldovae 670-83
294 1568019 1568210 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
295 4364585 4364776 - NZ_CP043727.1 Yersinia canariae
296 336370 336561 + NZ_CP011118.1 Yersinia enterocolitica
297 4378691 4378882 - NZ_CP032487.1 Yersinia hibernica
298 140799 140990 + NZ_CP046293.1 Yersinia intermedia
299 405477 405668 + NZ_CP061511.1 Mixta calida
300 480094 480285 + NZ_CP026377.1 Mixta gaviniae
301 152894 153085 + NZ_CP034035.1 Brenneria rubrifaciens
302 4801001 4801192 + NZ_CP014137.1 Brenneria goodwinii
303 3481743 3481934 - NC_013961.1 Erwinia amylovora CFBP1430
304 316910 317101 + NZ_CP023567.1 Erwinia pyrifoliae
305 395848 396039 + NZ_AP023184.1 Buttiauxella agrestis
306 461528 461719 + NZ_CP045845.1 Kluyvera intermedia
307 4176216 4176407 - NZ_CP012871.1 [Enterobacter] lignolyticus
308 428652 428843 + NZ_LR134475.1 Klebsiella aerogenes
309 236256 236447 + NZ_CP023525.1 Cedecea neteri
310 424847 425038 + NZ_CP065838.1 Klebsiella quasipneumoniae
311 4866194 4866385 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
312 434382 434573 + NZ_CP054254.1 Klebsiella variicola
313 426987 427178 + NZ_CP050508.1 Raoultella terrigena
314 507533 507724 + NZ_CP060111.1 Klebsiella michiganensis
315 546682 546873 + NZ_CP036175.1 Klebsiella huaxiensis
316 4338467 4338658 - NC_008709.1 Psychromonas ingrahamii 37
317 480266 480460 + NZ_LR699119.1 Aquicella siphonis
318 4096903 4097094 - NZ_CP048796.1 Providencia vermicola
319 974058 974249 + NZ_CP029736.1 Providencia rettgeri
320 3564663 3564854 - NZ_CP031123.2 Providencia huaxiensis
321 4872761 4872952 - NC_012962.1 Photorhabdus asymbiotica
322 1682002 1682193 - NZ_CP011104.1 Photorhabdus thracensis
323 1125117 1125302 + NZ_CP041046.1 Luteibacter pinisoli
324 424113 424304 + NZ_LN907827.1 Erwinia gerundensis
325 2118305 2118496 + NZ_CP042941.1 Atlantibacter hermannii
326 3951757 3951948 - NZ_LR134340.1 Escherichia marmotae
327 1441966 1442157 - NZ_CP053416.1 Salmonella bongori
328 2446180 2446371 - NZ_CP049115.1 Pantoea stewartii
329 459615 459806 + NC_017554.1 Pantoea ananatis PA13
330 3424575 3424766 - NZ_AP014857.1 Escherichia albertii
331 4346936 4347127 - NC_009792.1 Citrobacter koseri ATCC BAA-895
332 3830478 3830669 + NZ_CP038469.1 Citrobacter tructae
333 3591835 3592026 - NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
334 2832092 2832283 + NZ_CP044098.1 Citrobacter portucalensis
335 2250590 2250781 - NZ_CP033744.1 Citrobacter freundii
336 4586657 4586848 - NC_014306.1 Erwinia billingiae Eb661
337 1657375 1657566 + NZ_LT556085.1 Citrobacter amalonaticus
338 4761695 4761886 + NC_013716.1 Citrobacter rodentium ICC168
339 24999 25190 - NZ_CP045205.1 Citrobacter telavivensis
340 292332 292526 + NC_007947.1 Methylobacillus flagellatus KT
341 138839 139030 + NZ_CP047349.1 Proteus terrae subsp. cibarius
342 3586908 3587099 + NC_010554.1 Proteus mirabilis HI4320
343 1193918 1194109 + NZ_CP023536.1 Providencia alcalifaciens
344 775282 775446 + NC_013959.1 Sideroxydans lithotrophicus ES-1
345 392178 392369 + NZ_CP054058.1 Scandinavium goeteborgense
346 2330636 2330821 + NZ_CP042218.1 Luteimonas granuli
347 1708198 1708389 + NZ_CP026364.1 Proteus hauseri
348 4424037 4424228 - NZ_CP031560.1 Dickeya dianthicola
349 319176 319367 + NZ_CP065534.1 Lonsdalea populi
350 747008 747199 - NZ_CP023009.1 Lonsdalea britannica
351 458129 458320 + NZ_CP033040.1 Thiomicrorhabdus indica
352 5886803 5886994 - NZ_CP016171.1 Bordetella bronchialis
353 947827 948030 + NZ_CP024899.1 Rhodobaca barguzinensis
354 4102488 4102679 - NZ_LS483422.1 Providencia heimbachae
355 1092928 1093113 + NC_020541.1 Rhodanobacter denitrificans
356 363608 363799 + NZ_AP018722.1 Thiomicrorhabdus aquaedulcis
357 72410 72610 + NZ_CP048632.1 Rhizobium oryzihabitans
358 1185771 1185962 - NZ_CP019706.1 Pantoea alhagi
359 1627079 1627279 - NZ_CP061003.1 Agrobacterium tumefaciens
360 2579866 2580066 - NC_016147.2 Pseudoxanthomonas spadix BD-a59
361 3528382 3528573 - NC_010694.1 Erwinia tasmaniensis Et1/99
362 347311 347502 + NZ_CP047475.1 Vibrio astriarenae
363 164642 164833 + NZ_CP009238.1 Basilea psittacipulmonis DSM 24701
364 3330787 3330978 - NZ_CP029185.2 Limnobaculum parvum
365 373238 373429 + NZ_LS483470.1 Leminorella richardii
366 308899 309090 + NZ_LR134531.1 Pragia fontium
367 513237 513428 + NZ_AP018738.1 Ferriphaselus amnicola
368 3261328 3261528 - NZ_CP049241.1 Rhizobium pseudoryzae
369 1584603 1584794 - NC_016043.1 Taylorella asinigenitalis MCE3
370 1266743 1266919 + NZ_CP046027.1 Neisseria brasiliensis
371 2496812 2497003 - NZ_LT906434.1 Neisseria zoodegmatis
372 742201 742392 + NZ_CP013124.1 Pseudomonas mendocina S5.2
373 4573811 4574002 - NZ_CP068551.1 Pseudomonas khazarica
374 449720 449896 + NZ_CP035033.1 Hydrogenovibrio thermophilus
375 3130313 3130510 - NC_005966.1 Acinetobacter baylyi ADP1
376 2369859 2370050 - NZ_CP057657.1 Escherichia fergusonii
377 3448568 3448759 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
378 4183708 4183899 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
379 4174696 4174881 - NZ_CP027860.1 Ahniella affigens
380 2278126 2278317 - NZ_CP035688.1 Vibrio metoecus
381 2620372 2620563 - NZ_AP014524.1 Vibrio cholerae MS6
382 3096292 3096483 + NZ_CP014035.2 Vibrio fluvialis
383 1082824 1083015 + NZ_CP041335.1 Chitinolyticbacter meiyuanensis
384 3112398 3112589 - NZ_AP014635.1 Vibrio tritonius
385 2118064 2118240 - NZ_CP010975.1 Kangiella geojedonensis
386 2126781 2126957 - NZ_CP012418.1 Kangiella sediminilitoris
387 2545787 2545978 - NZ_CP033078.1 Vibrio zhugei
388 121350 121541 - NZ_CP040990.1 Vibrio furnissii
389 489225 489416 + NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
390 173671 173862 + NZ_CP009056.1 Frischella perrara
391 4229059 4229250 + NZ_CP028271.1 Mixta intestinalis
392 3432951 3433142 - NC_004337.2 Shigella flexneri 2a str. 301
393 2719273 2719464 - NZ_CP029347.1 Saliniradius amylolyticus
394 3004364 3004555 + NZ_CP022987.1 Pusillimonas thiosulfatoxidans
395 836331 836510 + NZ_LR134365.1 Cardiobacterium hominis
396 2939668 2939859 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
397 136301 136492 + NC_015581.1 Thiomicrospira cyclica ALM1
398 1149604 1149798 + NZ_LR134313.1 Neisseria canis
399 666420 666617 + NZ_CP004393.1 Celeribacter indicus
400 2716930 2717121 - NZ_AP019651.1 Vibrio taketomensis
401 2853393 2853584 - NZ_CP032093.1 Vibrio alfacsensis
402 3184255 3184446 + NZ_AP019657.1 Vibrio ponticus
403 408956 409147 + NZ_CP044069.1 Vibrio vulnificus
404 280258 280449 + NZ_CP030788.1 Vibrio campbellii
405 255227 255418 + NZ_CP009354.1 Vibrio tubiashii ATCC 19109
406 2822526 2822717 - NZ_CP018312.1 Vibrio rotiferianus
407 1543835 1544026 - NZ_CP019959.1 Vibrio owensii
408 487958 488149 + NZ_CP009467.1 Vibrio harveyi
409 1956313 1956504 - NZ_CP025792.1 Vibrio jasicida 090810c
410 376326 376517 + NZ_CP061527.1 Shigella dysenteriae
411 483975 484166 + NC_007963.1 Chromohalobacter salexigens DSM 3043
412 3881901 3882071 - NZ_CP053069.1 Usitatibacter rugosus
413 171801 171992 + NZ_CP007030.1 Thiomicrospira aerophila AL3
414 5207456 5207647 - NC_010170.1 Bordetella petrii
415 487164 487358 + NZ_CP029331.1 Thauera hydrothermalis
416 4143651 4143842 - NZ_CP034752.1 Jinshanibacter zhutongyuii
417 1574762 1574953 - NZ_CP047165.1 Pelistega ratti
418 471962 472120 + NZ_CP016895.1 Acinetobacter larvae
419 3090222 3090413 - NZ_CP028901.1 Algicoccus marinus
420 2014327 2014518 + NZ_CP023706.1 Edwardsiella tarda
421 287288 287479 + NZ_CP016043.1 Edwardsiella hoshinae
422 3478365 3478556 - NC_012779.2 Edwardsiella ictaluri 93-146
423 1416862 1417053 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
424 4914107 4914298 - NZ_CP053986.1 Achromobacter denitrificans
425 131256 131462 + NZ_CP032125.1 Profundibacter amoris
426 157075 157266 + NZ_CP007445.1 Gilliamella apicola
427 6344132 6344323 - NZ_CP038034.1 Achromobacter insolitus
428 1787332 1787523 + NZ_CP065150.1 Vibrio kanaloae
429 2975575 2975766 - NC_011753.2 Vibrio atlanticus
430 312625 312816 + NZ_CP039700.1 Vibrio cyclitrophicus
431 2682212 2682373 + NZ_CP060414.1 Neisseria musculi
432 3144894 3145052 - NZ_CP032134.1 Acinetobacter chinensis
433 35499 35690 + NZ_CP043146.1 Bordetella holmesii
434 3283999 3284190 - NC_018518.1 Bordetella pertussis 18323
435 4122145 4122336 + NZ_AP019378.1 Bordetella parapertussis
436 5133382 5133573 - NZ_LR134326.1 Bordetella bronchiseptica
437 2457344 2457535 - NZ_LR134302.1 Achromobacter spanius
438 3085026 3085220 - NZ_CP022579.1 Oryzomicrobium terrae
439 2458271 2458465 - NZ_CP014646.1 Thauera humireducens
440 282760 282951 + NZ_AP018689.1 Vibrio aphrogenes
441 379883 380077 + NC_012968.1 Methylotenera mobilis JLW8
442 317638 317829 + NZ_AP018685.1 Vibrio rumoiensis
443 2851611 2851802 - NZ_CP045350.1 Vibrio aquimaris
444 2462093 2462284 - NZ_CP022741.1 Vibrio qinghaiensis
445 1202640 1202852 + NZ_CP011971.1 Steroidobacter denitrificans
446 4425406 4425597 - NZ_CP016440.1 Bordetella pseudohinzii
447 1564576 1564767 - NZ_CP021395.1 Bordetella hinzii
448 1199848 1200042 + NZ_CP059565.1 Neisseria wadsworthii
449 372941 373132 + NZ_CP013106.1 Halomonas huangheensis
450 36250 36441 + NC_010645.1 Bordetella avium 197N
451 1086150 1086317 - NZ_CP053923.1 Defluviicoccus vanus
452 1365085 1365276 + NZ_LR134533.1 Neisseria weaveri
453 3776328 3776519 + NZ_CP051180.1 Ferrimonas lipolytica
454 209708 209899 + NZ_AP022843.1 Halomonas hydrothermalis
455 380447 380641 + NC_014207.1 Methylotenera versatilis 301
456 434608 434787 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
457 686181 686375 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
458 313416 313607 + NC_014541.1 Ferrimonas balearica DSM 9799
459 1858664 1858837 - NZ_CP041730.1 Chitinimonas arctica
460 215277 215468 + NZ_CP048602.1 Halomonas piezotolerans
461 4080497 4080685 + NZ_CP043473.1 Chromobacterium paludis
462 4510721 4510909 - NC_005085.1 Chromobacterium violaceum ATCC 12472
463 2213140 2213328 + NZ_CP029495.1 Chromobacterium phragmitis
464 431300 431488 + NZ_AP019312.1 Chromobacterium haemolyticum
465 1823437 1823628 + NZ_CP040863.1 Rodentibacter heylii
466 702038 702229 - NZ_CP059082.1 Halomonas titanicae
467 1575880 1576068 + NZ_CP039731.1 Aquitalea aquatilis
468 3959029 3959217 - NZ_CP047241.1 Aquitalea denitrificans
469 3569827 3570015 + NZ_CP017707.1 Chromobacterium vaccinii
470 3254829 3255008 - NZ_LR778301.1 Denitratisoma oestradiolicum
471 237269 237460 + NZ_CP028897.1 Dongshaea marina
472 368050 368241 + NC_011312.1 Aliivibrio salmonicida LFI1238
473 1660255 1660446 - NZ_CP052766.1 Alteromonas pelagimontana
474 922941 923144 - NC_008789.1 Halorhodospira halophila SL1
475 253756 253947 + NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
476 965433 965624 + NZ_CP009888.1 Pseudoalteromonas piratica
477 879094 879285 - NC_003910.7 Colwellia psychrerythraea 34H
478 3846215 3846406 - NZ_CP036536.1 Salinimonas lutimaris
479 3587043 3587234 - NZ_CP013187.1 Pseudoalteromonas phenolica
480 1512034 1512225 + NZ_CP072425.1 Pseudoalteromonas viridis
481 290670 290861 + NZ_CP031769.1 Salinimonas sediminis
482 1992056 1992247 - NZ_CP034759.1 Litorilituus sediminis
483 2204995 2205171 + NZ_CP020465.1 Cognaticolwellia beringensis
484 2106696 2106890 - NZ_CP059567.1 Neisseria shayeganii
485 3298982 3299143 - NZ_CP012373.2 Beggiatoa leptomitoformis
486 2217767 2217958 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
487 3824708 3824872 - NZ_CP016210.1 Azoarcus olearius
488 383174 383350 + NZ_AP020335.1 Hydrogenovibrio marinus
489 3262122 3262325 - NZ_CP053073.1 Usitatibacter palustris
490 1896208 1896402 + NZ_CP018839.1 Thauera chlorobenzoica
491 2907834 2908028 - NZ_CP028339.1 Thauera aromatica K172
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP013742.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF03947.20 0.99 487 1782.0 same-strand Ribosomal Proteins L2, C-terminal domain
2 PF00181.25 0.99 486 1782 same-strand Ribosomal Proteins L2, RNA binding domain
3 PF00203.23 0.99 483 1486.0 same-strand Ribosomal protein S19
4 PF00237.21 1.0 488 1139 same-strand Ribosomal protein L22p/L17e
5 PF00189.22 1.0 489 423.0 same-strand Ribosomal protein S3, C-terminal domain
6 PF07650.19 1.0 489 423.0 same-strand KH domain
7 PF00252.20 0.99 484 0 same-strand Ribosomal protein L16p/L10e
8 PF00366.22 1.0 489 0.0 same-strand Ribosomal protein S17
9 PF00238.21 0.9 442 419 same-strand Ribosomal protein L14p/L23e
10 PF17136.6 0.9 440 801 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
11 PF00467.31 0.6 295 802.0 same-strand KOW motif
12 PF00673.23 0.9 439 1130.0 same-strand ribosomal L5P family C-terminus
13 PF00281.21 0.9 439 1130.0 same-strand Ribosomal protein L5
14 PF00253.23 0.86 419 1683.0 same-strand Ribosomal protein S14p/S29e
++ More..