ProsmORF-pred
Result : A8GVD2
Protein Information
Information Type Description
Protein name 50S ribosomal protein L30
NCBI Accession ID CP000849.1
Organism Rickettsia bellii (strain OSU 85-389)
Left 396984
Right 397181
Strand +
Nucleotide Sequence ATGAATAATAAAAATTTAATTAATGATGTAAAAGTTACTCAAGTTAAAAGCAGTATAGGTCGTAAATATGATCAAAAATTAACATTAATTGGGCTTGGTTTAAATAAAATTAATAAATCTGTTGTTCTTAAAAATACTGATTCAGTTCAAGGTATGCTCAAAAAAGTAGAGCATTTATTAAAAATAGAAAATGTGTAA
Sequence MNNKNLINDVKVTQVKSSIGRKYDQKLTLIGLGLNKINKSVVLKNTDSVQGMLKKVEHLLKIENV
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7.
Pubmed ID
Domain CDD:412218
Functional Category Ribosomal_protein
Uniprot ID A8GVD2
ORF Length (Amino Acid) 65
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Conservation Analysis
Conservation Analysis
No. of Species: 204
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1145120 1145317 - NC_007940.1 Rickettsia bellii RML369-C
2 511237 511428 + NC_017058.1 Rickettsia australis str. Cutlack
3 993593 993784 - NZ_AP019563.1 Rickettsia asiatica
4 941820 942011 - NZ_AP019864.1 Rickettsia heilongjiangensis
5 809550 809741 - NC_017049.1 Rickettsia prowazekii str. Chernikova
6 860193 860384 - NC_016929.1 Rickettsia canadensis str. CA410
7 1288463 1288654 - NZ_LN794217.1 Rickettsia monacensis
8 933469 933660 - NC_010263.3 Rickettsia rickettsii str. Iowa
9 905012 905203 - NC_009881.1 Rickettsia akari str. Hartford
10 925472 925663 - NC_003103.1 Rickettsia conorii str. Malish 7
11 935301 935492 - NC_016639.1 Rickettsia slovaca 13-B
12 819781 819972 - NC_017066.1 Rickettsia typhi str. TH1527
13 1082059 1082232 - NZ_CP053923.1 Defluviicoccus vanus
14 526885 527061 + NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
15 52852 53037 + NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
16 2028085 2028264 - NZ_CP030041.1 Echinicola strongylocentroti
17 654416 654607 + NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4
18 917726 917905 + NZ_AP019700.1 Stella humosa
19 3274572 3274760 - NZ_CP041025.1 Paremcibacter congregatus
20 363046 363213 + NZ_CP029829.1 Azospirillum ramasamyi
21 2472046 2472213 - NZ_CP054619.1 Azospirillum oryzae
22 250649 250828 - NC_019904.1 Echinicola vietnamensis DSM 17526
23 248192 248371 - NZ_CP040106.1 Echinicola rosea
24 308822 308989 - NZ_CP012401.1 Azospirillum thiophilum
25 3099426 3099593 - NC_017584.1 Rhodospirillum rubrum F11
26 404554 404721 + NZ_CP030126.1 Indioceanicola profundi
27 928538 928729 + NZ_CP029353.1 Azospirillum thermophilum
28 2595213 2595380 - NZ_CP044117.1 Roseomonas mucosa
29 1996729 1996896 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
30 1249918 1250085 + NZ_CP030265.1 Skermanella pratensis
31 2097090 2097251 + NZ_CP042582.1 Hypericibacter adhaerens
32 3266928 3267095 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
33 5489451 5489636 - NC_013440.1 Haliangium ochraceum DSM 14365
34 1516270 1516461 + NC_017059.1 Pararhodospirillum photometricum DSM 122
35 1256344 1256523 + NZ_CP012836.1 Algoriphagus sanaruensis
36 1199599 1199787 + NZ_CP062147.1 Komagataeibacter hansenii
37 984117 984281 + NZ_CP040517.1 Luteithermobacter gelatinilyticus
38 2894237 2894410 - NC_017956.1 Tistrella mobilis KA081020-065
39 2019983 2020174 + NZ_CP061205.1 Kordiimonas pumila
40 890447 890605 + NZ_CP042808.1 Acetobacter oryzoeni
41 2515629 2515787 + NC_021991.1 Acetobacter pasteurianus 386B
42 1020461 1020619 + NZ_CP022374.1 Acetobacter oryzifermentans
43 2131794 2131961 - NC_016026.1 Micavibrio aeruginosavorus ARL-13
44 542850 543008 + NZ_CP015164.1 Acetobacter ascendens
45 178381 178542 - NZ_CP014525.1 Haematospirillum jordaniae
46 1677833 1677994 + NZ_CP023449.1 Rhizorhabdus dicambivorans
47 1022504 1022692 - NZ_CP019875.1 Komagataeibacter nataicola
48 4135309 4135488 + NZ_CP044399.1 Moritella marina ATCC 15381
49 1827911 1828090 + NC_018010.1 Belliella baltica DSM 15883
50 157505 157690 - NZ_LN606600.1 Acetobacter senegalensis
51 286799 286975 + NZ_AP018689.1 Vibrio aphrogenes
52 1907094 1907264 - NC_014655.1 Leadbetterella byssophila DSM 17132
53 3368301 3368504 - NC_007626.1 Magnetospirillum magneticum AMB-1
54 2712890 2713066 - NZ_AP019651.1 Vibrio taketomensis
55 351366 351542 + NZ_CP047475.1 Vibrio astriarenae
56 3100348 3100524 + NZ_CP014035.2 Vibrio fluvialis
57 2698216 2698392 - NZ_CP016414.1 Vibrio scophthalmi
58 3188309 3188485 + NZ_AP019657.1 Vibrio ponticus
59 117310 117486 - NZ_CP040990.1 Vibrio furnissii
60 2440447 2440635 - NZ_CP050139.1 Komagataeibacter rhaeticus
61 3227943 3228104 - NC_014365.1 Desulfarculus baarsii DSM 2075
62 3089828 3090031 - NZ_CP061038.1 Sphingomonas alpina
63 2849354 2849530 - NZ_CP032093.1 Vibrio alfacsensis
64 2615975 2616151 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
65 284313 284489 + NZ_CP030788.1 Vibrio campbellii
66 2992097 2992273 - NZ_CP031781.1 Vibrio parahaemolyticus
67 2818486 2818662 - NZ_CP018312.1 Vibrio rotiferianus
68 1539795 1539971 - NZ_CP019959.1 Vibrio owensii
69 1952275 1952451 - NZ_CP025792.1 Vibrio jasicida 090810c
70 2544540 2544731 - NC_013204.1 Eggerthella lenta DSM 2243
71 1577887 1578081 + NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039
72 996273 996452 - NZ_CP072425.1 Pseudoalteromonas viridis
73 113452 113631 + NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
74 832025 832204 + NZ_CP009888.1 Pseudoalteromonas piratica
75 2454069 2454230 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
76 492014 492190 + NZ_CP009467.1 Vibrio harveyi
77 1210583 1210771 - NC_016027.1 Komagataeibacter medellinensis NBRC 3288
78 2847573 2847749 - NZ_CP045350.1 Vibrio aquimaris
79 1281434 1281601 + NC_009483.1 Geobacter uraniireducens Rf4
80 952894 953073 + NZ_CP009240.1 Megasphaera elsdenii 14-14
81 802486 802665 - NZ_CP029462.1 Megasphaera stantonii
82 52999 53190 - NZ_CP060244.1 Entomobacter blattae
83 1156516 1156722 + NZ_CP053708.1 Lichenicola cladoniae
84 3599820 3599999 - NZ_CP013187.1 Pseudoalteromonas phenolica
85 1516235 1516432 + NZ_CP012946.1 Blastochloris viridis
86 1911496 1911675 - NC_015703.1 Runella slithyformis DSM 19594
87 3134440 3134619 + NZ_CP034759.1 Litorilituus sediminis
88 3600058 3600240 + NC_014759.1 Marivirga tractuosa DSM 4126
89 3550944 3551123 - NC_017770.1 Solitalea canadensis DSM 3403
90 1357344 1357532 - NZ_CP036404.1 Komagataeibacter saccharivorans
91 2327527 2327688 + NZ_CP041660.1 Catenovulum sediminis
92 4882061 4882237 - NZ_CP014168.1 Sphingomonas panacis
93 708343 708522 + NC_007517.1 Geobacter metallireducens GS-15
94 317422 317601 + NC_014541.1 Ferrimonas balearica DSM 9799
95 240279 240461 + NZ_CP027523.1 Pseudoalteromonas carrageenovora
96 1558441 1558623 - NZ_CP019628.1 Pseudoalteromonas aliena
97 3190532 3190702 - NZ_CP042906.1 Hypericibacter terrae
98 3597420 3597602 - NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
99 1011565 1011723 - NZ_CP046908.1 Stappia indica
100 332734 332916 + NZ_AP018786.1 Sutterella megalosphaeroides
101 694433 694624 + NZ_CP009302.1 Berryella intestinalis
102 2864335 2864514 - NZ_LS483250.1 Moritella yayanosii
103 453638 453817 - NZ_CP022355.1 Paraphotobacterium marinum
104 619094 619273 + NC_003910.7 Colwellia psychrerythraea 34H
105 497715 497894 + NZ_CP017689.1 Thalassotalea crassostreae
106 1492385 1492570 - NC_009511.1 Sphingomonas wittichii RW1
107 3353429 3353611 - NZ_CP033065.1 Pseudoalteromonas agarivorans
108 3411257 3411439 - NZ_CP023464.1 Pseudoalteromonas atlantica
109 3452174 3452356 - NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
110 1379489 1379671 + NC_013162.1 Capnocytophaga ochracea DSM 7271
111 2060466 2060648 + NZ_CP022379.1 Capnocytophaga sputigena
112 3308328 3308510 - NZ_CP022022.1 Capnocytophaga endodontalis
113 4746255 4746440 - NC_014012.1 Shewanella violacea DSS12
114 2099843 2100028 + NC_011566.1 Shewanella piezotolerans WP3
115 5276141 5276305 - NC_009831.1 Shewanella sediminis HAW-EB3
116 2989829 2990011 - NC_007481.1 Pseudoalteromonas translucida
117 3286281 3286463 - NZ_CP011036.1 Pseudoalteromonas nigrifaciens
118 348652 348834 + NZ_CP032090.1 Pseudoalteromonas donghaensis
119 3568047 3568223 + NZ_CP031961.1 Pseudoalteromonas tunicata
120 321455 321634 + NC_013216.1 Desulfofarcimen acetoxidans DSM 771
121 2111969 2112127 + NZ_CP022389.1 Capnocytophaga canimorsus
122 408612 408788 + NZ_CP046268.1 Vibrio spartinae
123 321677 321853 + NZ_AP018685.1 Vibrio rumoiensis
124 176439 176621 + NZ_CP022272.1 Shewanella marisflavi
125 187746 187928 + NC_009092.1 Shewanella loihica PV-4
126 2274087 2274263 - NZ_CP035688.1 Vibrio metoecus
127 2175483 2175659 + NZ_CP046793.1 Vibrio metschnikovii
128 2616333 2616509 - NZ_AP014524.1 Vibrio cholerae MS6
129 3267572 3267748 + NZ_CP018221.1 Tardibacter chloracetimidivorans
130 411596 411781 + NZ_CP014782.1 Shewanella psychrophila
131 1311757 1311951 + NZ_CP024199.1 Thalassospira marina
132 690264 690446 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
133 1136702 1136881 + NZ_CP029479.1 Phenylobacterium parvum
134 3120659 3120841 - NZ_CP011041.1 Pseudoalteromonas tetraodonis
135 3156207 3156389 - NZ_CP011030.1 Pseudoalteromonas issachenkonii
136 996951 997127 + NZ_CP007389.1 Thermosipho melanesiensis
137 1610074 1610235 + NZ_CP027850.1 Caulobacter segnis
138 245872 246054 + NZ_CP022358.1 Shewanella bicestrii
139 1757474 1757662 + NZ_CP053086.1 Pelagibacterium halotolerans
140 1311735 1311929 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
141 1907470 1907664 + NZ_CP031555.1 Thalassospira indica
142 218955 219140 + NC_009901.1 Shewanella pealeana ATCC 700345
143 2458064 2458240 - NZ_CP022741.1 Vibrio qinghaiensis
144 2974827 2975012 + NZ_CP026100.1 Caulobacter flavus
145 644026 644187 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
146 256615 256797 + NC_016901.1 Shewanella baltica OS678
147 411254 411442 - NZ_CP004373.1 Gluconobacter oxydans DSM 3504
148 1290609 1290773 - NZ_LR134350.1 Actinomyces howellii
149 307487 307669 + NZ_CP031416.1 Gallaecimonas mangrovi
150 1269202 1269390 - NZ_LT821227.1 Phoenicibacter congonensis
151 3250802 3250963 - NZ_LR778301.1 Denitratisoma oestradiolicum
152 243694 243882 - NZ_CP022048.2 Brevundimonas vesicularis
153 1907888 1908085 - NZ_AP018907.1 Blastochloris tepida
154 4676672 4676854 + NZ_CP042435.1 Panacibacter ginsenosidivorans
155 199265 199444 + NZ_CP043998.1 Clostridium diolis
156 2935636 2935812 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
157 202222 202401 + NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT)
158 453627 453806 - NZ_CP020104.1 Spirosoma aerolatum
159 1494554 1494736 - NZ_CP022386.1 Capnocytophaga gingivalis
160 5873217 5873393 + NZ_CP048113.1 Chitinophaga agri
161 889318 889497 + NC_014972.1 Desulfobulbus propionicus DSM 2032
162 3546874 3547041 - NZ_CP048815.1 Caulobacter rhizosphaerae
163 751758 751937 + NZ_CP009788.1 Geobacter pickeringii
164 2404467 2404649 - NC_015186.1 Acidiphilium multivorum AIU301
165 816562 816738 + NZ_AP014509.1 Thermotoga caldifontis AZM44c09
166 1944838 1945020 + NZ_LT906449.1 Capnocytophaga haemolytica
167 2408153 2408311 - NZ_AP021875.1 Desulfosarcina widdelii
168 1950861 1951049 - NZ_CP014689.1 Gluconobacter albidus
169 1841510 1841695 - NZ_CP007035.1 Niabella soli DSM 19437
170 5028261 5028455 - NZ_CP017147.1 Bosea vaviloviae
171 617820 617984 + NC_014394.1 Gallionella capsiferriformans ES-2
172 2493915 2494088 - NC_015684.1 Afipia carboxidovorans OM5
173 227328 227507 + NC_022571.1 Clostridium saccharobutylicum DSM 13864
174 335282 335464 - NZ_CP019419.1 Polaribacter reichenbachii
175 821223 821408 + NZ_AP014690.1 Asaia bogorensis NBRC 16594
176 828558 828740 + NZ_CP053348.1 Winogradskyella forsetii
177 1338652 1338837 + NZ_CP013002.1 Caulobacter henricii
178 3587659 3587841 + NZ_CP017477.1 Polaribacter vadi
179 354672 354860 - NZ_CP032485.1 Neokomagataea tanensis
180 2653760 2653939 - NZ_HG917868.1 Clostridium bornimense
181 584037 584222 + NZ_CP068345.1 Succinivibrio dextrinosolvens
182 104299 104490 - NZ_CP048630.1 Ancylobacter pratisalsi
183 2915238 2915435 - NC_022997.1 Hyphomicrobium nitrativorans NL23
184 459660 459848 - NZ_CP068419.1 Gluconobacter sphaericus
185 2802227 2802406 - NZ_CP048106.1 Pontibacter pudoricolor
186 282737 282925 - NZ_CP043043.1 Gluconobacter thailandicus
187 3919855 3920043 - NC_020908.1 Octadecabacter arcticus 238
188 3529796 3529975 - NZ_CP030775.1 Clostridium butyricum
189 4398382 4398573 + NZ_CP021112.1 Pseudorhodoplanes sinuspersici
190 1380173 1380349 - NZ_CP027231.1 Bacteroides zoogleoformans
191 545718 545903 + NZ_CP031518.1 Treponema ruminis
192 430378 430542 + NZ_AP018721.1 Sulfuritortus calidifontis
193 253657 253836 + NZ_CP027286.1 Clostridium chauvoei
194 2018314 2018493 + NZ_CP023671.1 Clostridium septicum
195 1694455 1694637 - NZ_CP040812.1 Antarcticibacterium flavum
196 1527968 1528144 - NZ_CP027234.1 Bacteroides heparinolyticus
197 4335302 4335490 - NC_020911.1 Octadecabacter antarcticus 307
198 1193576 1193752 - NZ_CP021904.1 Alkalitalea saponilacus
199 1750523 1750690 - NZ_CP014681.1 Kozakia baliensis
200 1472119 1472298 + NC_013222.1 Robiginitalea biformata HTCC2501
201 3669844 3670023 - NZ_CP028842.1 Clostridium botulinum
202 3950970 3951149 - NZ_CP011663.1 Clostridium sporogenes
203 3928822 3929001 - NZ_CP013019.1 Clostridium pasteurianum
204 907554 907724 + NZ_CP018911.1 Glycocaulis alkaliphilus
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_007940.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00411.21 0.69 140 2888.0 same-strand Ribosomal protein S11
2 PF00416.24 0.76 155 2487 same-strand Ribosomal protein S13/S18
3 PF00344.22 1.0 204 479.0 same-strand SecY
4 PF00828.21 0.98 200 7.0 same-strand Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
5 PF03719.17 0.99 202 8.0 same-strand Ribosomal protein S5, C-terminal domain
6 PF00333.22 0.99 202 8.0 same-strand Ribosomal protein S5, N-terminal domain
7 PF00861.24 0.99 202 546.5 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
8 PF00347.25 1.0 204 934.5 same-strand Ribosomal protein L6
9 PF00410.21 1.0 203 1487 same-strand Ribosomal protein S8
10 PF00253.23 0.97 198 1908.0 same-strand Ribosomal protein S14p/S29e
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