Result : Q5ZT07
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | AE017354.1 |
| Organism | Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) |
| Left | 2663262 |
| Right | 2663501 |
| Strand | + |
| Nucleotide Sequence | ATGCCTACCGTTCGTGTAAAAGAAGGCGAAAACCCAGAATATGCACTACGACGTTTCAAACGCTCTTGTGAAAAAGCCGGTATTTTAACCGAATTACGTCGCCGTGAGTTTTATGAAAAACCAACCGCAGAGCGTAAGCGCAAGCAAGCTGCTGCAGTAAAACGTCATCTTAAAAAAATATCTCGTGATGTTAGTTCAAGACGAGGTGTTGGTCACCGACGTAAAAAAAGCACTACCTGA |
| Sequence | MPTVRVKEGENPEYALRRFKRSCEKAGILTELRRREFYEKPTAERKRKQAAAVKRHLKKISRDVSSRRGVGHRRKKSTT |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 15448271 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q5ZT07 |
| ORF Length (Amino Acid) | 79 |
++ More..
| Conservation Analysis |
No. of Species: 366
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2673620 | 2673859 | + | NZ_CP013742.1 | Legionella pneumophila |
| 2 | 2761683 | 2761922 | + | NZ_LT906442.1 | Legionella waltersii |
| 3 | 3567273 | 3567500 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 4 | 227133 | 227360 | + | NZ_LR134418.1 | Legionella adelaidensis |
| 5 | 791196 | 791426 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 6 | 434291 | 434524 | - | NZ_LT906451.1 | Legionella lansingensis |
| 7 | 535604 | 535837 | - | NZ_LN681225.1 | Legionella hackeliae |
| 8 | 3330814 | 3331044 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 9 | 3001792 | 3002022 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 10 | 2737895 | 2738128 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 11 | 2921256 | 2921483 | - | NZ_LR134374.1 | Legionella spiritensis |
| 12 | 2242062 | 2242289 | + | NZ_CP038254.1 | Legionella israelensis |
| 13 | 3355843 | 3356058 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 14 | 265710 | 265937 | - | NZ_CP011971.1 | Steroidobacter denitrificans |
| 15 | 3213144 | 3213359 | + | NZ_CP016268.1 | Woeseia oceani |
| 16 | 1207903 | 1208118 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 17 | 348773 | 348988 | + | NZ_CP012154.1 | Wenzhouxiangella marina |
| 18 | 464851 | 465066 | - | NZ_AP018560.1 | Aerosticca soli |
| 19 | 337738 | 337953 | - | NC_020541.1 | Rhodanobacter denitrificans |
| 20 | 366251 | 366466 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 21 | 3000974 | 3001189 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 22 | 2982514 | 2982729 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 23 | 395975 | 396190 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 24 | 3156856 | 3157071 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 25 | 3207308 | 3207523 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 26 | 654625 | 654840 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 27 | 3235930 | 3236145 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 28 | 3296645 | 3296860 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 29 | 3446321 | 3446536 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 30 | 2336945 | 2337160 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 31 | 315207 | 315422 | - | NZ_CP064030.1 | Dyella caseinilytica |
| 32 | 1851974 | 1852189 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 33 | 802506 | 802721 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 34 | 2920727 | 2920942 | + | NC_017033.1 | Frateuria aurantia DSM 6220 |
| 35 | 1045639 | 1045854 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 36 | 4301835 | 4302050 | + | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 37 | 2111905 | 2112120 | + | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 38 | 2353694 | 2353909 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 39 | 1027721 | 1027936 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 40 | 4149072 | 4149287 | + | NZ_CP041046.1 | Luteibacter pinisoli |
| 41 | 2510295 | 2510510 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 42 | 528556 | 528771 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 43 | 1258866 | 1259081 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 44 | 3191147 | 3191362 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 45 | 1971617 | 1971832 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 46 | 5664522 | 5664737 | - | NZ_CP027860.1 | Ahniella affigens |
| 47 | 966976 | 967191 | - | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 48 | 1537886 | 1538101 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 49 | 2179055 | 2179270 | + | NZ_CP053627.1 | Xylella taiwanensis |
| 50 | 2740473 | 2740688 | + | NZ_CP014841.1 | Dyella thiooxydans |
| 51 | 3123917 | 3124132 | + | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 52 | 427510 | 427725 | - | NZ_CP013816.1 | Piscirickettsia salmonis |
| 53 | 416659 | 416874 | - | NZ_CP046570.1 | Xanthomonas albilineans |
| 54 | 4405960 | 4406175 | + | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 55 | 3037496 | 3037711 | + | NZ_CP016878.1 | Xanthomonas hortorum |
| 56 | 4373670 | 4373885 | + | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 57 | 2330546 | 2330761 | + | NZ_CP018725.1 | Xanthomonas vesicatoria ATCC 35937 |
| 58 | 2863497 | 2863712 | - | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 59 | 292851 | 293066 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 60 | 434086 | 434301 | - | NZ_CP007810.1 | Xanthomonas oryzae pv. oryzicola |
| 61 | 87461 | 87676 | - | NZ_CP012900.1 | Stenotrophomonas acidaminiphila |
| 62 | 4482514 | 4482729 | + | NZ_CP072268.1 | Xanthomonas euvesicatoria pv. alfalfae |
| 63 | 4563162 | 4563377 | + | NZ_CP048044.1 | Xanthomonas citri |
| 64 | 2347211 | 2347426 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 65 | 4166766 | 4166981 | + | NZ_CP033326.1 | Xanthomonas cucurbitae |
| 66 | 398931 | 399146 | - | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 67 | 416303 | 416518 | - | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 68 | 230060 | 230275 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 69 | 1903305 | 1903520 | + | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 70 | 5782756 | 5782971 | + | NZ_AP014940.1 | Lysobacter enzymogenes |
| 71 | 785948 | 786163 | - | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 72 | 1337246 | 1337461 | + | NZ_CP060820.1 | Lysobacter solisilvae (ex Woo and Kim 2020) |
| 73 | 5216765 | 5216980 | + | NZ_CP011129.1 | Lysobacter antibioticus |
| 74 | 1410569 | 1410784 | + | NZ_CP042218.1 | Luteimonas granuli |
| 75 | 3881683 | 3881898 | + | NZ_CP046603.1 | Lysobacter soli |
| 76 | 4101788 | 4102003 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 77 | 549696 | 549911 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 78 | 4979995 | 4980210 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 79 | 1163006 | 1163221 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 80 | 611596 | 611811 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 81 | 5275426 | 5275641 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 82 | 5396638 | 5396853 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 83 | 721058 | 721273 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 84 | 5329622 | 5329837 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 85 | 668567 | 668782 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 86 | 5415817 | 5416032 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 87 | 5518358 | 5518573 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 88 | 416763 | 416978 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 89 | 2952618 | 2952833 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 90 | 5496420 | 5496635 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 91 | 5556162 | 5556377 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 92 | 5723122 | 5723337 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 93 | 5842928 | 5843143 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 94 | 3001990 | 3002205 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 95 | 593192 | 593407 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 96 | 5925895 | 5926110 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 97 | 5930129 | 5930344 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 98 | 5939271 | 5939486 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 99 | 6092166 | 6092381 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 100 | 6288782 | 6288997 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 101 | 4819148 | 4819363 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 102 | 6141070 | 6141285 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 103 | 4536155 | 4536370 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 104 | 6217475 | 6217690 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 105 | 6200463 | 6200678 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 106 | 6261809 | 6262024 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 107 | 359768 | 359983 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 108 | 6240571 | 6240786 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 109 | 2423862 | 2424077 | - | NZ_CP060711.1 | Thermomonas brevis |
| 110 | 1107321 | 1107536 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 111 | 522752 | 522967 | - | NZ_CP023465.1 | Lysobacter capsici |
| 112 | 381737 | 381952 | + | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 113 | 1180772 | 1180987 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 114 | 3332967 | 3333182 | - | NZ_CP071517.1 | Lysobacter arenosi |
| 115 | 560116 | 560331 | - | NZ_CP011131.1 | Lysobacter gummosus |
| 116 | 3157699 | 3157914 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 117 | 272779 | 272994 | - | NZ_CP041242.1 | Lysobacter alkalisoli |
| 118 | 4251284 | 4251499 | + | NZ_CP028897.1 | Dongshaea marina |
| 119 | 1910522 | 1910737 | + | NZ_CP029556.1 | Lysobacter oculi |
| 120 | 1536658 | 1536873 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 121 | 2658443 | 2658658 | - | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 122 | 3812210 | 3812425 | + | NZ_CP029843.1 | Lysobacter maris |
| 123 | 737009 | 737224 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 124 | 442293 | 442508 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 125 | 523445 | 523660 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 126 | 2236721 | 2236936 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 127 | 2101463 | 2101678 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 128 | 4317491 | 4317706 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 129 | 485056 | 485271 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 130 | 3798358 | 3798573 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 131 | 4204592 | 4204807 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 132 | 2924394 | 2924609 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 133 | 1677381 | 1677596 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 134 | 577436 | 577651 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 135 | 3223559 | 3223774 | + | NZ_CP065534.1 | Lonsdalea populi |
| 136 | 859785 | 860000 | + | NZ_CP026364.1 | Proteus hauseri |
| 137 | 3149766 | 3149981 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 138 | 1720109 | 1720324 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 139 | 1673564 | 1673779 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 140 | 479111 | 479326 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 141 | 3434146 | 3434361 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 142 | 656830 | 657045 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 143 | 2589595 | 2589810 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 144 | 552369 | 552584 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 145 | 3621519 | 3621734 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 146 | 1790435 | 1790650 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 147 | 2216080 | 2216295 | - | NZ_CP019706.1 | Pantoea alhagi |
| 148 | 3641414 | 3641629 | + | NZ_CP061511.1 | Mixta calida |
| 149 | 3895054 | 3895269 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 150 | 3542976 | 3543191 | + | NZ_CP048796.1 | Providencia vermicola |
| 151 | 3430911 | 3431126 | + | NZ_LS483422.1 | Providencia heimbachae |
| 152 | 1689800 | 1690015 | - | NZ_CP029736.1 | Providencia rettgeri |
| 153 | 2390261 | 2390476 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 154 | 3712368 | 3712583 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 155 | 569747 | 569962 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 156 | 2282973 | 2283188 | + | NZ_CP009787.1 | Yersinia rohdei |
| 157 | 596819 | 597034 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 158 | 3726095 | 3726310 | + | NZ_LR134340.1 | Escherichia marmotae |
| 159 | 2711432 | 2711647 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 160 | 2121148 | 2121363 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 161 | 1741314 | 1741529 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 162 | 670322 | 670537 | - | NZ_CP015581.1 | Tatumella citrea |
| 163 | 1228234 | 1228449 | + | NZ_CP053416.1 | Salmonella bongori |
| 164 | 676912 | 677127 | - | NZ_LT615367.1 | Dickeya aquatica |
| 165 | 3893839 | 3894054 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 166 | 3831846 | 3832061 | + | NZ_CP026377.1 | Mixta gaviniae |
| 167 | 2210673 | 2210888 | + | NZ_CP049115.1 | Pantoea stewartii |
| 168 | 3846629 | 3846844 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 169 | 642800 | 643015 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 170 | 2946791 | 2947006 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 171 | 722181 | 722396 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 172 | 460215 | 460430 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 173 | 3199818 | 3200033 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 174 | 631276 | 631491 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 175 | 3969104 | 3969319 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 176 | 3210781 | 3210996 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 177 | 3201760 | 3201975 | + | NZ_AP014857.1 | Escherichia albertii |
| 178 | 3940131 | 3940346 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 179 | 631173 | 631388 | - | NZ_CP050150.1 | Hafnia alvei |
| 180 | 673301 | 673516 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 181 | 3004923 | 3005138 | + | NZ_CP028271.1 | Mixta intestinalis |
| 182 | 3906078 | 3906293 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 183 | 4145257 | 4145472 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 184 | 4030990 | 4031205 | + | NZ_CP043727.1 | Yersinia canariae |
| 185 | 4009151 | 4009366 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 186 | 4128898 | 4129113 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 187 | 658041 | 658256 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 188 | 642342 | 642557 | - | NZ_CP025799.1 | Dickeya zeae |
| 189 | 4127816 | 4128031 | + | NZ_CP032487.1 | Yersinia hibernica |
| 190 | 4035186 | 4035401 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 191 | 3985732 | 3985947 | + | NZ_LR134201.1 | Cedecea lapagei |
| 192 | 732379 | 732594 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 193 | 720747 | 720962 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 194 | 4018606 | 4018821 | + | NC_015968.1 | Enterobacter soli |
| 195 | 3958965 | 3959180 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 196 | 3268989 | 3269204 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 197 | 4107975 | 4108190 | - | NZ_CP038469.1 | Citrobacter tructae |
| 198 | 4114515 | 4114730 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 199 | 951521 | 951736 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 200 | 4364704 | 4364919 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 201 | 3374062 | 3374277 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 202 | 4289212 | 4289427 | - | NZ_CP067057.1 | Rahnella aceris |
| 203 | 4035140 | 4035355 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 204 | 4145431 | 4145646 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 205 | 4336921 | 4337136 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 206 | 861641 | 861856 | + | NZ_CP007230.1 | Yersinia similis |
| 207 | 664676 | 664891 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 208 | 2825352 | 2825567 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 209 | 655534 | 655749 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 210 | 3100667 | 3100882 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 211 | 436653 | 436868 | - | NZ_CP046293.1 | Yersinia intermedia |
| 212 | 2002936 | 2003151 | + | NZ_CP033744.1 | Citrobacter freundii |
| 213 | 637067 | 637282 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 214 | 856170 | 856385 | + | NZ_CP065640.1 | Serratia rubidaea |
| 215 | 4245358 | 4245573 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 216 | 671175 | 671390 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 217 | 4509314 | 4509529 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 218 | 3313524 | 3313739 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 219 | 2517378 | 2517593 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 220 | 2127779 | 2127994 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 221 | 4166837 | 4167052 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 222 | 602694 | 602909 | - | NZ_CP071320.1 | Serratia ureilytica |
| 223 | 1940066 | 1940281 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 224 | 4371153 | 4371368 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 225 | 3805386 | 3805601 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 226 | 3094102 | 3094317 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 227 | 4547364 | 4547579 | + | NZ_LT906479.1 | Serratia ficaria |
| 228 | 4263774 | 4263989 | + | NZ_CP023525.1 | Cedecea neteri |
| 229 | 4588332 | 4588547 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 230 | 622810 | 623025 | - | NZ_CP041247.1 | Raoultella electrica |
| 231 | 4640048 | 4640263 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 232 | 3810072 | 3810287 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 233 | 3551161 | 3551376 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 234 | 4677209 | 4677424 | + | NZ_LR134494.1 | Serratia quinivorans |
| 235 | 182890 | 183105 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 236 | 1234353 | 1234568 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 237 | 4757548 | 4757763 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 238 | 5168795 | 5169010 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 239 | 1715626 | 1715841 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 240 | 1049524 | 1049739 | + | NZ_CP026047.1 | Raoultella planticola |
| 241 | 3950440 | 3950655 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 242 | 5406038 | 5406253 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 243 | 3360215 | 3360430 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 244 | 672456 | 672671 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 245 | 690215 | 690430 | - | NZ_CP050508.1 | Raoultella terrigena |
| 246 | 4663462 | 4663677 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 247 | 1015497 | 1015712 | + | NZ_CP011254.1 | Serratia fonticola |
| 248 | 743498 | 743713 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 249 | 812163 | 812378 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 250 | 483952 | 484167 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 251 | 3492542 | 3492757 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 252 | 850060 | 850275 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 253 | 1820943 | 1821158 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 254 | 659699 | 659914 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 255 | 639192 | 639407 | - | NZ_CP038853.1 | Pantoea vagans |
| 256 | 3627915 | 3628130 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 257 | 4106046 | 4106261 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 258 | 3548768 | 3548983 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 259 | 418769 | 418984 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 260 | 3087488 | 3087703 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 261 | 2957122 | 2957337 | + | NZ_LS483470.1 | Leminorella richardii |
| 262 | 3272578 | 3272793 | + | NZ_LR134531.1 | Pragia fontium |
| 263 | 3499492 | 3499707 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 264 | 2393986 | 2394201 | - | NZ_CP072793.1 | Thiothrix unzii |
| 265 | 413854 | 414069 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 266 | 1366520 | 1366732 | + | NZ_CP024942.1 | Paraburkholderia terricola |
| 267 | 3073713 | 3073928 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 268 | 3052216 | 3052431 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 269 | 3779762 | 3779977 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 270 | 987510 | 987722 | - | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 271 | 967721 | 967933 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 272 | 821663 | 821878 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 273 | 1199876 | 1200091 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 274 | 2975849 | 2976064 | + | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 275 | 3200556 | 3200771 | + | NZ_CP040449.1 | Aeromonas simiae |
| 276 | 406892 | 407107 | - | NZ_CP009056.1 | Frischella perrara |
| 277 | 319834 | 320046 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 278 | 496059 | 496274 | + | NZ_CP007445.1 | Gilliamella apicola |
| 279 | 2921529 | 2921744 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 280 | 1575631 | 1575846 | - | NC_014147.1 | Moraxella catarrhalis BBH18 |
| 281 | 2916465 | 2916680 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 282 | 1188263 | 1188475 | - | NC_007650.1 | Burkholderia thailandensis E264 |
| 283 | 1682167 | 1682379 | - | NZ_CP009556.1 | Burkholderia oklahomensis C6786 |
| 284 | 241067 | 241279 | - | NZ_CP020738.1 | Paraburkholderia acidophila |
| 285 | 160040 | 160255 | - | NZ_CP035688.1 | Vibrio metoecus |
| 286 | 515539 | 515754 | - | NZ_CP033078.1 | Vibrio zhugei |
| 287 | 404485 | 404700 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 288 | 382258 | 382473 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 289 | 2663386 | 2663601 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 290 | 2740458 | 2740673 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 291 | 2685199 | 2685414 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 292 | 2289446 | 2289661 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 293 | 173763 | 173978 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 294 | 2498165 | 2498380 | + | NZ_AP019657.1 | Vibrio ponticus |
| 295 | 2513715 | 2513930 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 296 | 524081 | 524296 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 297 | 11100 | 11315 | + | NC_013456.1 | Vibrio antiquarius |
| 298 | 377507 | 377722 | - | NZ_CP030788.1 | Vibrio campbellii |
| 299 | 964476 | 964691 | - | NZ_CP040990.1 | Vibrio furnissii |
| 300 | 2859724 | 2859939 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 301 | 417079 | 417294 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 302 | 2726057 | 2726272 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 303 | 521847 | 522062 | - | NZ_AP014635.1 | Vibrio tritonius |
| 304 | 1435235 | 1435450 | + | NZ_CP019959.1 | Vibrio owensii |
| 305 | 594028 | 594243 | - | NZ_CP009467.1 | Vibrio harveyi |
| 306 | 193952 | 194167 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 307 | 3046160 | 3046375 | + | NZ_CP046268.1 | Vibrio spartinae |
| 308 | 2077888 | 2078145 | + | NZ_CP015959.1 | Paraburkholderia caribensis |
| 309 | 2739949 | 2740161 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 310 | 428071 | 428286 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 311 | 1311906 | 1312121 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 312 | 1012525 | 1012740 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 313 | 407111 | 407326 | - | NC_011753.2 | Vibrio atlanticus |
| 314 | 2854388 | 2854603 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 315 | 2005988 | 2006203 | - | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 316 | 4263912 | 4264127 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 317 | 399560 | 399775 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 318 | 530903 | 531118 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 319 | 2295318 | 2295533 | - | NZ_AP021889.1 | Thiosulfatimonas sediminis |
| 320 | 2649363 | 2649578 | + | NZ_LS483250.1 | Moritella yayanosii |
| 321 | 3572861 | 3573076 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 322 | 2866735 | 2866950 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 323 | 3219751 | 3219966 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 324 | 3599917 | 3600132 | - | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 325 | 1605623 | 1605838 | - | NZ_LR134365.1 | Cardiobacterium hominis |
| 326 | 4108708 | 4108923 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 327 | 5260329 | 5260544 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 328 | 439750 | 439965 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 329 | 533071 | 533286 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 330 | 500071 | 500286 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 331 | 5578997 | 5579212 | - | NZ_CP009365.1 | Pseudomonas soli |
| 332 | 202970 | 203185 | - | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 333 | 488615 | 488830 | - | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 334 | 345259 | 345474 | + | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 335 | 2030314 | 2030529 | + | NC_017856.1 | Methylophaga frappieri |
| 336 | 1859904 | 1860119 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 337 | 1408033 | 1408248 | - | NZ_CP020472.1 | Shewanella japonica |
| 338 | 3207073 | 3207288 | + | NZ_CP037951.1 | Parashewanella tropica |
| 339 | 885745 | 885960 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 340 | 1011081 | 1011296 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 341 | 417406 | 417621 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 342 | 3245875 | 3246090 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 343 | 3379972 | 3380187 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 344 | 1157719 | 1157934 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 345 | 1094454 | 1094669 | - | NZ_CP041036.1 | Shewanella polaris |
| 346 | 1051670 | 1051885 | + | NZ_CP036200.1 | Shewanella maritima |
| 347 | 1232941 | 1233156 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 348 | 3959079 | 3959294 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 349 | 3593142 | 3593357 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 350 | 1374900 | 1375115 | - | NZ_CP046378.1 | Shewanella algae |
| 351 | 1173526 | 1173741 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 352 | 1238981 | 1239196 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 353 | 1461026 | 1461241 | - | NC_016901.1 | Shewanella baltica OS678 |
| 354 | 1118744 | 1118959 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 355 | 2905059 | 2905274 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 356 | 3701788 | 3702003 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 357 | 437792 | 438004 | + | NZ_CP035900.1 | Burkholderia glumae |
| 358 | 494607 | 494822 | - | NZ_CP046415.1 | Guyparkeria halophila |
| 359 | 1277337 | 1277552 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 360 | 1490396 | 1490611 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 361 | 1030019 | 1030234 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 362 | 232269 | 232481 | + | NC_014718.1 | Mycetohabitans rhizoxinica HKI 454 |
| 363 | 4137028 | 4137225 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 364 | 4225469 | 4225666 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 365 | 875777 | 875989 | + | NZ_CP046911.1 | Paraburkholderia acidiphila |
| 366 | 878360 | 878572 | - | NZ_CP046912.1 | Paraburkholderia acidiphila |
| 367 | 1273429 | 1273641 | - | NZ_CP049136.1 | Paraburkholderia tropica |
| 368 | 478753 | 478965 | + | NZ_CP029641.1 | Paraburkholderia dokdonella |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011971.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00814.27 | 0.89 | 325 | 232.0 | opposite-strand | tRNA N6-adenosine threonylcarbamoyltransferase |
| 2 | PF08275.13 | 0.95 | 346 | 472 | same-strand | DNA primase catalytic core, N-terminal domain |
| 3 | PF01807.22 | 0.94 | 344 | 472 | same-strand | CHC2 zinc finger |
| 4 | PF08278.13 | 0.93 | 339 | 470.0 | same-strand | DNA primase DnaG DnaB-binding |
| 5 | PF13662.8 | 0.95 | 346 | 472 | same-strand | Toprim domain |
| 6 | PF13155.8 | 0.93 | 340 | 471 | same-strand | Toprim-like |
| 7 | PF01751.24 | 0.95 | 346 | 472 | same-strand | Toprim domain |
| 8 | PF10410.11 | 0.92 | 335 | 465.5 | same-strand | DnaB-helicase binding domain of primase |
| 9 | PF13362.8 | 0.94 | 345 | 471.5 | same-strand | Toprim domain |
| 10 | PF04546.15 | 0.83 | 305 | 2335.5 | same-strand | Sigma-70, non-essential region |
| 11 | PF04539.18 | 0.84 | 307 | 2339.5 | same-strand | Sigma-70 region 3 |
| 12 | PF04542.16 | 0.84 | 308 | 2363 | same-strand | Sigma-70 region 2 |
| 13 | PF04545.18 | 0.84 | 307 | 2354 | same-strand | Sigma-70, region 4 |
| 14 | PF03979.16 | 0.84 | 307 | 2339.5 | same-strand | Sigma-70 factor, region 1.1 |
| 15 | PF00140.22 | 0.84 | 307 | 2354 | same-strand | Sigma-70 factor, region 1.2 |
| 16 | PF02152.20 | 0.66 | 241 | 2106 | opposite-strand | Dihydroneopterin aldolase |
++ More..