Result : Q5WUB9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CR628337.1 |
| Organism | Legionella pneumophila (strain Lens) |
| Left | 2568946 |
| Right | 2569176 |
| Strand | + |
| Nucleotide Sequence | ATGAGCAAAGGCATACATTTCGAACAATCAATTACCGAACTCGAAGAAATTGTCCGGCAACTGGAAAAGGGAGAGCTTAGCCTTGAAGAATCGCTGAAACAATTTGAAAAGGGAATTAGCCTTGCAAGACGTTGCCAAAATGCGTTGAATCAGGCAGAGCAAAAAATTGAAACGTTAACTGGTACTGATTCCAACATTGAACTCGACTCAGATGAACAAACAAGTGATTGA |
| Sequence | MSKGIHFEQSITELEEIVRQLEKGELSLEESLKQFEKGISLARRCQNALNQAEQKIETLTGTDSNIELDSDEQTSD |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 15467720 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | Q5WUB9 |
| ORF Length (Amino Acid) | 76 |
++ More..
| Conservation Analysis |
No. of Species: 125
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2643851 | 2644081 | + | NZ_CP013742.1 | Legionella pneumophila |
| 2 | 2594566 | 2594796 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 3 | 2733894 | 2734124 | + | NZ_LT906442.1 | Legionella waltersii |
| 4 | 80891 | 81109 | - | NZ_CP025491.2 | Legionella sainthelensi |
| 5 | 643200 | 643418 | - | NC_013861.1 | Legionella longbeachae NSW150 |
| 6 | 2653809 | 2654027 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 7 | 872663 | 872881 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 8 | 542519 | 542737 | - | NZ_LT906451.1 | Legionella lansingensis |
| 9 | 634483 | 634701 | - | NZ_LN681225.1 | Legionella hackeliae |
| 10 | 955507 | 955737 | - | NZ_CP038254.1 | Legionella israelensis |
| 11 | 3031140 | 3031364 | - | NZ_LR134374.1 | Legionella spiritensis |
| 12 | 72010 | 72228 | + | NZ_LR134418.1 | Legionella adelaidensis |
| 13 | 5326659 | 5326868 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 14 | 899791 | 900048 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 15 | 748156 | 748398 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 16 | 2051769 | 2052011 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 17 | 1071273 | 1071530 | - | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 18 | 5134981 | 5135214 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 19 | 722438 | 722680 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 20 | 4367047 | 4367238 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 21 | 5912581 | 5912766 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 22 | 916624 | 916866 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 23 | 4523369 | 4523611 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 24 | 707804 | 708046 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 25 | 769393 | 769638 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 26 | 4525369 | 4525554 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 27 | 2010158 | 2010406 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 28 | 5272212 | 5272454 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 29 | 848474 | 848659 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 30 | 2817656 | 2817898 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 31 | 5125059 | 5125301 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 32 | 5117002 | 5117247 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 33 | 1033168 | 1033359 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 34 | 5124117 | 5124359 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 35 | 614837 | 615079 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 36 | 5715222 | 5715464 | - | NZ_CP009365.1 | Pseudomonas soli |
| 37 | 1480613 | 1480864 | + | NC_022664.1 | Spiribacter curvatus |
| 38 | 894001 | 894243 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 39 | 1773671 | 1773856 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 40 | 2852927 | 2853169 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 41 | 2538697 | 2538939 | + | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 42 | 745273 | 745515 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 43 | 680625 | 680867 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 44 | 643296 | 643538 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 45 | 823496 | 823738 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 46 | 1092266 | 1092460 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 47 | 2460599 | 2460853 | + | NZ_CP017715.1 | Marinobacter salinus |
| 48 | 1414956 | 1415150 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 49 | 865300 | 865542 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 50 | 3805550 | 3805792 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 51 | 2574283 | 2574501 | + | NC_011753.2 | Vibrio atlanticus |
| 52 | 6074716 | 6074958 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 53 | 5265890 | 5266132 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 54 | 4211173 | 4211415 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 55 | 5426259 | 5426501 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 56 | 738213 | 738431 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 57 | 627239 | 627484 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 58 | 5726504 | 5726725 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 59 | 719611 | 719856 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 60 | 5198325 | 5198510 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 61 | 5377168 | 5377353 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 62 | 5799717 | 5799959 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 63 | 6141145 | 6141387 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 64 | 708818 | 709036 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 65 | 604354 | 604608 | - | NC_017506.1 | Marinobacter adhaerens HP15 |
| 66 | 6154361 | 6154603 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 67 | 6227711 | 6227896 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 68 | 5580375 | 5580617 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 69 | 5944296 | 5944538 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 70 | 5782558 | 5782800 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 71 | 5800891 | 5801133 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 72 | 4683818 | 4684060 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 73 | 497545 | 497787 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 74 | 1212283 | 1212483 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 75 | 5096721 | 5096963 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 76 | 800490 | 800732 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 77 | 6065807 | 6066049 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 78 | 6085563 | 6085805 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 79 | 674319 | 674561 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 80 | 517516 | 517734 | - | NZ_AP019657.1 | Vibrio ponticus |
| 81 | 2820898 | 2821119 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 82 | 5952110 | 5952352 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 83 | 4962886 | 4963128 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 84 | 5997848 | 5998090 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 85 | 817048 | 817290 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 86 | 2846508 | 2846750 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 87 | 3344377 | 3344562 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 88 | 1560494 | 1560679 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 89 | 3679573 | 3679830 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 90 | 837766 | 837987 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 91 | 742501 | 742743 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 92 | 803902 | 804144 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 93 | 1315266 | 1315505 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 94 | 2534787 | 2534987 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 95 | 2483168 | 2483425 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 96 | 1060257 | 1060499 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 97 | 2589027 | 2589212 | - | NZ_CP065640.1 | Serratia rubidaea |
| 98 | 697545 | 697736 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 99 | 2930905 | 2931147 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 100 | 3560038 | 3560292 | + | NZ_CP020931.1 | Marinobacter salarius |
| 101 | 861520 | 861750 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 102 | 2668335 | 2668577 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 103 | 2549030 | 2549269 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 104 | 2460916 | 2461161 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 105 | 1222236 | 1222421 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 106 | 3223293 | 3223535 | + | NZ_LT615367.1 | Dickeya aquatica |
| 107 | 1450466 | 1450705 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 108 | 2162007 | 2162225 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 109 | 1220456 | 1220695 | - | NZ_CP029822.1 | Entomomonas moraniae |
| 110 | 987048 | 987290 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 111 | 866292 | 866534 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 112 | 1620541 | 1620798 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 113 | 3483874 | 3484074 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 114 | 3041520 | 3041768 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 115 | 2168984 | 2169220 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 116 | 2557896 | 2558153 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 117 | 1432940 | 1433125 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 118 | 4043925 | 4044164 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 119 | 3087493 | 3087693 | + | NZ_CP038853.1 | Pantoea vagans |
| 120 | 191869 | 192105 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 121 | 966005 | 966205 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 122 | 1103915 | 1104148 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 123 | 3152395 | 3152595 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 124 | 390976 | 391164 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 125 | 1376587 | 1376832 | - | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 126 | 2274674 | 2274910 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP021425.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00348.19 | 0.99 | 124 | -3 | same-strand | Polyprenyl synthetase |
| 2 | PF13292.8 | 0.82 | 102 | 993 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.82 | 102 | 993.0 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.82 | 102 | 993.0 | same-strand | Transketolase, C-terminal domain |
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