Result : Q5WFK4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | AP006627.1 |
| Organism | Bacillus clausii (strain KSM-K16) |
| Left | 2446569 |
| Right | 2446781 |
| Strand | - |
| Nucleotide Sequence | ATGCTGTACCCTTCAATTGACAATTTGCTAGAAAAATTGGATTCAAAATACTCGCTTGTTACAGTCTCTGCACGCCGTGCTCGTGAAATGAAAGAAGACTCTGCCCGGGTGCCACTTGTGGAAAAGCCGAAGTCATATAAGTTTGTCGGCATTGCCCTTGAGGAAATTGTGAACGACCAGCTGACAAAGCGTGTGCCAAAAGAGGAGCAGTGA |
| Sequence | MLYPSIDNLLEKLDSKYSLVTVSARRAREMKEDSARVPLVEKPKSYKFVGIALEEIVNDQLTKRVPKEEQ |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | |
| Domain | CDD:417484 |
| Functional Category | Others |
| Uniprot ID | Q5WFK4 |
| ORF Length (Amino Acid) | 70 |
++ More..
| Conservation Analysis |
No. of Species: 143
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2631892 | 2632098 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 2 | 2371622 | 2371840 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 3 | 3366278 | 3366487 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 4 | 4021328 | 4021549 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 5 | 1394823 | 1395017 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 6 | 2654854 | 2655054 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 7 | 2615779 | 2615991 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 8 | 1525171 | 1525371 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 9 | 970752 | 970952 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 10 | 1401133 | 1401336 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 11 | 1748378 | 1748578 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 12 | 1247770 | 1247964 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 13 | 1770980 | 1771180 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 14 | 1544613 | 1544816 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 15 | 985923 | 986123 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 16 | 2124672 | 2124884 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 17 | 1545775 | 1545966 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 18 | 1016176 | 1016376 | + | NZ_LR134483.1 | Listeria grayi |
| 19 | 4995586 | 4995807 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 20 | 154653 | 154856 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 21 | 3774362 | 3774565 | - | NZ_CP043404.1 | Bacillus safensis |
| 22 | 2244607 | 2244822 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 23 | 1626647 | 1626853 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 24 | 1188301 | 1188501 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 25 | 274179 | 274379 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 26 | 2794404 | 2794604 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 27 | 636150 | 636350 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 28 | 2117209 | 2117427 | + | NZ_CP053989.1 | Niallia circulans |
| 29 | 3892469 | 3892681 | - | NC_011725.1 | Bacillus cereus B4264 |
| 30 | 991263 | 991469 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 31 | 4189187 | 4189393 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 32 | 339096 | 339299 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 33 | 3536425 | 3536622 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 34 | 2481307 | 2481513 | + | NZ_CP026363.1 | Brevibacillus agri |
| 35 | 1133165 | 1133365 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 36 | 2404825 | 2405025 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 37 | 2024414 | 2024635 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 38 | 1667937 | 1668134 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 39 | 2276019 | 2276225 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 40 | 1770415 | 1770615 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 41 | 1773722 | 1773922 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 42 | 3687924 | 3688136 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 43 | 2185099 | 2185299 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 44 | 3310167 | 3310361 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 45 | 536969 | 537172 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 46 | 926763 | 926972 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 47 | 2699972 | 2700178 | - | NZ_LS483476.1 | Lederbergia lentus |
| 48 | 1117092 | 1117301 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 49 | 1953821 | 1954024 | + | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 50 | 586483 | 586683 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 51 | 1721823 | 1722044 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 52 | 2267251 | 2267457 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 53 | 3757478 | 3757690 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 54 | 4273042 | 4273257 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 55 | 1471807 | 1472019 | + | NZ_CP040336.1 | Bacillus luti |
| 56 | 720094 | 720297 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 57 | 2454619 | 2454816 | + | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 58 | 1293683 | 1293889 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 59 | 1590837 | 1591049 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 60 | 552133 | 552330 | + | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 61 | 1516196 | 1516423 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 62 | 6441233 | 6441445 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 63 | 3896755 | 3896967 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 64 | 410165 | 410362 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 65 | 1010059 | 1010268 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 66 | 1820926 | 1821129 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 67 | 1549964 | 1550167 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 68 | 1646645 | 1646848 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 69 | 1609107 | 1609310 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 70 | 1615437 | 1615640 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 71 | 343373 | 343576 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 72 | 1642567 | 1642770 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 73 | 1533045 | 1533248 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 74 | 2761544 | 2761750 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 75 | 1193915 | 1194130 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 76 | 2819743 | 2819940 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 77 | 4434300 | 4434515 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 78 | 4840006 | 4840215 | - | NZ_CP034437.1 | Paenibacillus albus |
| 79 | 4382492 | 4382710 | - | NZ_AP019400.1 | Cohnella abietis |
| 80 | 2227028 | 2227237 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 81 | 2363652 | 2363855 | - | NZ_CP011937.1 | Bacillus velezensis |
| 82 | 1597291 | 1597494 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 83 | 1476483 | 1476707 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 84 | 1860455 | 1860658 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 85 | 1956270 | 1956473 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 86 | 97472 | 97672 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 87 | 1602528 | 1602740 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 88 | 5300658 | 5300861 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 89 | 1818852 | 1819076 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 90 | 2148535 | 2148735 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 91 | 3426240 | 3426440 | - | NZ_CP017703.1 | Aeribacillus pallidus |
| 92 | 609252 | 609458 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 93 | 1875917 | 1876120 | - | NZ_LT906444.1 | Listeria welshimeri |
| 94 | 1902281 | 1902484 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 95 | 1322000 | 1322227 | + | NZ_CP012024.1 | Bacillus smithii |
| 96 | 2570441 | 2570665 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 97 | 1172251 | 1172445 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 98 | 4869185 | 4869400 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 99 | 1013260 | 1013487 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 100 | 3657282 | 3657509 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 101 | 719827 | 720036 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 102 | 1881428 | 1881607 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 103 | 6446444 | 6446659 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 104 | 1624572 | 1624781 | - | NZ_CP034118.1 | Staphylospora marina |
| 105 | 331754 | 331951 | + | NZ_LT996885.1 | Dialister massiliensis |
| 106 | 1888412 | 1888615 | - | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 107 | 4455120 | 4455323 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 108 | 179681 | 179905 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 109 | 1638749 | 1638958 | - | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 110 | 969563 | 969772 | + | NZ_CP047361.1 | Macrococcus canis |
| 111 | 107318 | 107524 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 112 | 2131808 | 2132017 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 113 | 3307362 | 3307586 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 114 | 1763893 | 1764087 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 115 | 2814594 | 2814794 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 116 | 1113008 | 1113205 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 117 | 2365885 | 2366097 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 118 | 2005959 | 2006171 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 119 | 1286277 | 1286489 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 120 | 995126 | 995326 | + | NZ_CP033433.1 | Cohnella candidum |
| 121 | 646783 | 646986 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 122 | 1661282 | 1661494 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 123 | 1640371 | 1640565 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 124 | 67343 | 67555 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 125 | 1648921 | 1649133 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 126 | 1366257 | 1366469 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 127 | 141085 | 141297 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 128 | 1450512 | 1450724 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 129 | 1702325 | 1702537 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 130 | 2867294 | 2867506 | + | NZ_CP009288.1 | Paenibacillus durus |
| 131 | 1124450 | 1124662 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 132 | 1660203 | 1660394 | - | NZ_LR215048.1 | Acholeplasma axanthum |
| 133 | 2609572 | 2609784 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 134 | 2454195 | 2454407 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 135 | 3602988 | 3603188 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 136 | 2671222 | 2671422 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 137 | 6075828 | 6076028 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 138 | 3494323 | 3494523 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 139 | 1241470 | 1241676 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 140 | 5056037 | 5056237 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 141 | 3126633 | 3126833 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 142 | 1432859 | 1433053 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 143 | 1825293 | 1825487 | - | NZ_CP024955.1 | Kyrpidia spormannii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP024035.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01189.19 | 0.84 | 120 | 5171.0 | same-strand | 16S rRNA methyltransferase RsmB/F |
| 2 | PF01029.20 | 0.84 | 120 | 5171.0 | same-strand | NusB family |
| 3 | PF00551.21 | 0.9 | 128 | 4248.0 | same-strand | Formyl transferase |
| 4 | PF02911.20 | 0.91 | 130 | 4248.5 | same-strand | Formyl transferase, C-terminal domain |
| 5 | PF17764.3 | 0.92 | 132 | 1354.5 | same-strand | 3'DNA-binding domain (3'BD) |
| 6 | PF18074.3 | 0.92 | 132 | 1354.5 | same-strand | Primosomal protein N C-terminal domain |
| 7 | PF04851.17 | 0.92 | 132 | 1354.5 | same-strand | Type III restriction enzyme, res subunit |
| 8 | PF00270.31 | 0.92 | 132 | 1354.5 | same-strand | DEAD/DEAH box helicase |
| 9 | PF18319.3 | 0.92 | 132 | 1354.5 | same-strand | PriA DNA helicase Cys-rich region (CRR) domain |
| 10 | PF04127.17 | 0.86 | 123 | 138 | same-strand | DNA / pantothenate metabolism flavoprotein |
| 11 | PF02441.21 | 0.88 | 126 | 137.0 | same-strand | Flavoprotein |
| 12 | PF00625.23 | 0.98 | 140 | 4.0 | same-strand | Guanylate kinase |
| 13 | PF13238.8 | 0.63 | 90 | 4.0 | same-strand | AAA domain |
| 14 | PF04025.14 | 0.75 | 107 | 634 | same-strand | Domain of unknown function (DUF370) |
| 15 | PF03755.15 | 0.69 | 99 | 955 | same-strand | YicC-like family, N-terminal region |
| 16 | PF08340.13 | 0.69 | 99 | 955 | same-strand | Domain of unknown function (DUF1732) |
| 17 | PF01327.23 | 0.66 | 94 | 3831.0 | same-strand | Polypeptide deformylase |
++ More..