Result : Q5PBN0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CP000030.1 |
| Organism | Anaplasma marginale (strain St. Maries) |
| Left | 138716 |
| Right | 138943 |
| Strand | + |
| Nucleotide Sequence | TTGGTGTATCTCAAGAGGCCGTACTTCAGAAAGTCGAGGTCCTGTCCCCTAGCGCAGTGTCCCGATGAAGACATAGATTATAAAAATAGGGCGCTGCTCTCTAAGTTCGTTTCGGAGTACGGTCGGATATTGCCGAGTAGGATTACTTCGGTTTCTTCTAGGAAGCAAAAGCTTCTGGCACGTGCTGTCAAGCGGGCTAGATTTCTCGCTCTGTTGCCGTATTGCTAA |
| Sequence | MVYLKRPYFRKSRSCPLAQCPDEDIDYKNRALLSKFVSEYGRILPSRITSVSSRKQKLLARAVKRARFLALLPYC |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 15618402 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q5PBN0 |
| ORF Length (Amino Acid) | 75 |
++ More..
| Conservation Analysis |
No. of Species: 396
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 137814 | 138041 | + | NC_012026.1 | Anaplasma marginale str. Florida |
| 2 | 96786 | 97013 | + | NZ_CP015994.1 | Anaplasma ovis str. Haibei |
| 3 | 154736 | 154954 | + | NC_021880.1 | Anaplasma phagocytophilum str. JM |
| 4 | 895616 | 895843 | - | NC_023063.1 | Ehrlichia muris AS145 |
| 5 | 1155487 | 1155714 | - | NZ_CP040111.1 | Ehrlichia ruminantium |
| 6 | 977192 | 977419 | - | NC_007354.1 | Ehrlichia canis str. Jake |
| 7 | 1896483 | 1896740 | - | NZ_CP014689.1 | Gluconobacter albidus |
| 8 | 3522167 | 3522394 | + | NZ_CP040818.1 | Paraoceanicella profunda |
| 9 | 6346968 | 6347207 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 10 | 244713 | 244952 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 11 | 4209340 | 4209579 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 12 | 2737025 | 2737264 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 13 | 4270182 | 4270421 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 14 | 3554474 | 3554713 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 15 | 4551355 | 4551594 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 16 | 6975136 | 6975375 | + | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 17 | 4447863 | 4448102 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 18 | 4270815 | 4271054 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 19 | 5683200 | 5683439 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 20 | 4658909 | 4659148 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 21 | 3392010 | 3392249 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 22 | 1844325 | 1844564 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 23 | 2420902 | 2421096 | + | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 24 | 3501586 | 3501822 | + | NZ_CP042582.1 | Hypericibacter adhaerens |
| 25 | 2623484 | 2623723 | + | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 26 | 238222 | 238479 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 27 | 401218 | 401475 | - | NZ_CP068419.1 | Gluconobacter sphaericus |
| 28 | 348049 | 348306 | - | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 29 | 220307 | 220564 | - | NZ_CP043043.1 | Gluconobacter thailandicus |
| 30 | 1260438 | 1260668 | + | NZ_CP062147.1 | Komagataeibacter hansenii |
| 31 | 1599603 | 1599854 | - | NZ_CP041025.1 | Paremcibacter congregatus |
| 32 | 945769 | 945999 | + | NZ_CP042808.1 | Acetobacter oryzoeni |
| 33 | 2570953 | 2571183 | + | NC_021991.1 | Acetobacter pasteurianus 386B |
| 34 | 599462 | 599692 | + | NZ_CP015164.1 | Acetobacter ascendens |
| 35 | 1075767 | 1075997 | + | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 36 | 90184 | 90447 | - | NZ_LN606600.1 | Acetobacter senegalensis |
| 37 | 2485902 | 2486159 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 38 | 4472519 | 4472764 | + | NZ_CP017147.1 | Bosea vaviloviae |
| 39 | 2894008 | 2894268 | - | NZ_CP044117.1 | Roseomonas mucosa |
| 40 | 1685704 | 1685931 | - | NZ_CP004393.1 | Celeribacter indicus |
| 41 | 710857 | 711090 | + | NZ_CP053923.1 | Defluviicoccus vanus |
| 42 | 2390798 | 2391025 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 43 | 283300 | 283527 | + | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 44 | 3424737 | 3424964 | + | NZ_CP024422.1 | Paracoccus yeei |
| 45 | 3861495 | 3861734 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 46 | 2649836 | 2650069 | + | NZ_CP004388.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 47 | 972071 | 972298 | - | NZ_CP045072.1 | Paracoccus kondratievae |
| 48 | 4791946 | 4792185 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 49 | 1248774 | 1248998 | + | NC_006526.2 | Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 |
| 50 | 10127 | 10351 | - | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 51 | 2333415 | 2333642 | + | NZ_LN832559.1 | Paracoccus aminovorans |
| 52 | 615135 | 615359 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 53 | 1583614 | 1583838 | - | NC_014006.1 | Sphingobium japonicum UT26S |
| 54 | 1433893 | 1434117 | + | NZ_AP017655.1 | Sphingobium cloacae |
| 55 | 2870883 | 2871122 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 56 | 1783924 | 1784118 | + | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 57 | 777257 | 777484 | - | NZ_CP034588.1 | Silicimonas algicola |
| 58 | 1349622 | 1349846 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 59 | 680668 | 680895 | + | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 60 | 2282606 | 2282854 | + | NZ_CP017940.1 | Phyllobacterium zundukense |
| 61 | 515558 | 515785 | - | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 62 | 3152129 | 3152377 | + | NZ_CP032509.1 | Georhizobium profundi |
| 63 | 800119 | 800346 | - | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 64 | 3606407 | 3606634 | - | NZ_CP015093.1 | Salipiger abyssi |
| 65 | 979420 | 979647 | + | NZ_CP030918.1 | Paracoccus suum |
| 66 | 2251985 | 2252236 | + | NZ_CP045423.1 | Microvirga thermotolerans |
| 67 | 1698189 | 1698383 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 68 | 2622066 | 2622293 | + | NZ_CP012661.1 | Defluviimonas alba |
| 69 | 1816443 | 1816670 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 70 | 680061 | 680288 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 71 | 1776665 | 1776889 | + | NZ_CP042306.1 | Sphingomonas panacisoli |
| 72 | 3011405 | 3011632 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 73 | 3172379 | 3172621 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 74 | 1091797 | 1092042 | - | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 75 | 1941788 | 1942015 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 76 | 1809621 | 1809860 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 77 | 748323 | 748547 | + | NZ_CP023705.1 | Sphingomonas melonis |
| 78 | 1904758 | 1904985 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 79 | 1890229 | 1890456 | + | NZ_CP010650.1 | Phaeobacter inhibens |
| 80 | 1540211 | 1540438 | - | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 81 | 2215322 | 2215549 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 82 | 2313936 | 2314163 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 83 | 1623298 | 1623525 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 84 | 978452 | 978676 | + | NZ_CP009571.1 | Sphingomonas taxi |
| 85 | 2149045 | 2149272 | + | NZ_CP048788.1 | Roseobacter ponti |
| 86 | 399597 | 399821 | - | NZ_CP035765.1 | Sphingomonas paucimobilis |
| 87 | 937141 | 937368 | + | NZ_CP027407.1 | Roseobacter denitrificans |
| 88 | 1825592 | 1825819 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 89 | 1429747 | 1429974 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 90 | 1513832 | 1514056 | - | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 91 | 1044526 | 1044756 | - | NZ_CP019044.1 | Salaquimonas pukyongi |
| 92 | 1863152 | 1863376 | - | NZ_CP061038.1 | Sphingomonas alpina |
| 93 | 3203389 | 3203622 | + | NZ_CP031555.1 | Thalassospira indica |
| 94 | 3029790 | 3030014 | - | NZ_CP014168.1 | Sphingomonas panacis |
| 95 | 2602863 | 2603096 | + | NZ_CP024199.1 | Thalassospira marina |
| 96 | 2413825 | 2414079 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 97 | 1044371 | 1044616 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 98 | 875366 | 875593 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 99 | 1610662 | 1610856 | - | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 100 | 1344467 | 1344661 | + | NZ_CP022196.1 | Celeribacter ethanolicus |
| 101 | 2565804 | 2566028 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 102 | 2478418 | 2478642 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 103 | 1116636 | 1116902 | - | NC_014217.1 | Starkeya novella DSM 506 |
| 104 | 210636 | 210863 | - | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 105 | 2074468 | 2074695 | + | NZ_CP012023.1 | Celeribacter marinus |
| 106 | 1197590 | 1197817 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 107 | 2458496 | 2458723 | + | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 108 | 2511217 | 2511444 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 109 | 2855284 | 2855511 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 110 | 221387 | 221611 | - | NZ_CP011452.2 | Croceibacterium atlanticum |
| 111 | 1488687 | 1488911 | - | NZ_CP016545.1 | Paraurantiacibacter namhicola |
| 112 | 2254045 | 2254290 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 113 | 677115 | 677339 | - | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 114 | 2244476 | 2244700 | - | NZ_CP022745.1 | Sphingobium xenophagum |
| 115 | 1238635 | 1238862 | + | NZ_CP060436.1 | Pseudooceanicola algae |
| 116 | 522736 | 522960 | + | NZ_CP041659.1 | Sphingomonas xanthus |
| 117 | 1125158 | 1125352 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 118 | 1261282 | 1261509 | - | NZ_CP032125.1 | Profundibacter amoris |
| 119 | 235021 | 235245 | - | NZ_CP051131.1 | Parasphingopyxis algicola |
| 120 | 2714173 | 2714397 | - | NZ_CP024920.1 | Qipengyuania seohaensis |
| 121 | 455048 | 455296 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 122 | 455041 | 455289 | - | NC_004310.3 | Brucella suis 1330 |
| 123 | 476945 | 477193 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 124 | 457090 | 457338 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 125 | 1527634 | 1527882 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 126 | 1530777 | 1531025 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 127 | 473169 | 473417 | - | NC_007618.1 | Brucella abortus 2308 |
| 128 | 106954 | 107202 | + | NZ_LT605585.1 | Brucella inopinata |
| 129 | 1328229 | 1328477 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 130 | 1269219 | 1269443 | + | NZ_CP010401.1 | Bartonella ancashensis |
| 131 | 2706411 | 2706635 | + | NZ_CP053015.1 | Sphingomonas lacunae |
| 132 | 2422260 | 2422514 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 133 | 2861580 | 2861828 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 134 | 3193412 | 3193660 | - | NZ_CP010803.1 | Martelella endophytica |
| 135 | 498991 | 499239 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 136 | 559931 | 560179 | - | NZ_CP064063.1 | Brucella anthropi |
| 137 | 570328 | 570552 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 138 | 768247 | 768495 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 139 | 1109372 | 1109620 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 140 | 766469 | 766717 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 141 | 742845 | 743093 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 142 | 2205985 | 2206233 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 143 | 1000621 | 1000875 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 144 | 4848183 | 4848431 | + | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 145 | 2868874 | 2869122 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 146 | 2134691 | 2134939 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 147 | 4789691 | 4789939 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 148 | 5355045 | 5355293 | + | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 149 | 5459917 | 5460165 | + | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 150 | 6490931 | 6491179 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 151 | 5263665 | 5263913 | - | NZ_CP050296.1 | Mesorhizobium huakuii |
| 152 | 1393888 | 1394112 | - | NZ_CP017057.1 | Erythrobacter litoralis |
| 153 | 618262 | 618501 | - | NZ_HG965802.1 | Bartonella henselae |
| 154 | 6299667 | 6299927 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 155 | 2359868 | 2360116 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 156 | 1493723 | 1493971 | - | NZ_CP058235.1 | Bartonella alsatica |
| 157 | 1458408 | 1458632 | - | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 158 | 1215656 | 1215904 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 159 | 1245080 | 1245328 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 160 | 1347635 | 1347883 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 161 | 1013984 | 1014232 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 162 | 1476430 | 1476678 | - | NZ_CP020906.1 | Rhizobium etli |
| 163 | 1487534 | 1487782 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 164 | 2878878 | 2879126 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 165 | 1549006 | 1549254 | - | NZ_CP013500.1 | Rhizobium esperanzae |
| 166 | 1532018 | 1532266 | - | NZ_CP071604.1 | Rhizobium binae |
| 167 | 3361168 | 3361416 | - | NZ_CP071454.1 | Rhizobium lentis |
| 168 | 1514813 | 1515061 | - | NZ_CP013532.1 | Rhizobium phaseoli |
| 169 | 1500320 | 1500568 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 170 | 1062770 | 1063018 | + | NZ_CP054021.1 | Rhizobium indicum |
| 171 | 1756634 | 1756882 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 172 | 348822 | 349049 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 173 | 533748 | 533972 | + | NZ_CP022889.1 | Tsuneonella mangrovi |
| 174 | 2404666 | 2404890 | + | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 175 | 861056 | 861304 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 176 | 589629 | 589877 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 177 | 735304 | 735552 | - | NZ_CP053856.1 | Rhizobium pusense |
| 178 | 728374 | 728622 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 179 | 1237868 | 1238116 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 180 | 565830 | 566078 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 181 | 1288244 | 1288492 | - | NZ_CP031843.2 | Bartonella kosoyi |
| 182 | 519963 | 520211 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 183 | 2027823 | 2028047 | + | NZ_AP019389.1 | Qipengyuania flava |
| 184 | 3520396 | 3520644 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 185 | 911583 | 911831 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 186 | 1292907 | 1293155 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 187 | 1284645 | 1284893 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 188 | 1123213 | 1123461 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 189 | 1812605 | 1812859 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 190 | 4565200 | 4565454 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 191 | 2242803 | 2243027 | + | NZ_CP031357.1 | Erythrobacter aureus |
| 192 | 1152023 | 1152247 | + | NZ_CP037948.1 | Qipengyuania sediminis |
| 193 | 66547 | 66771 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 194 | 499866 | 500093 | - | NC_008783.1 | Bartonella bacilliformis KC583 |
| 195 | 3089781 | 3090029 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 196 | 2145190 | 2145438 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 197 | 4014732 | 4014959 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 198 | 2524787 | 2524981 | + | NZ_CP027850.1 | Caulobacter segnis |
| 199 | 2778608 | 2778832 | + | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 200 | 872831 | 873070 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 201 | 2223319 | 2223543 | - | NZ_CP020083.1 | Blastomonas fulva |
| 202 | 1700639 | 1700899 | - | NZ_CP042906.1 | Hypericibacter terrae |
| 203 | 3185160 | 3185384 | + | NZ_CP009122.1 | Sphingopyxis fribergensis |
| 204 | 1661571 | 1661798 | - | NZ_CP061202.1 | Rhodobacter capsulatus |
| 205 | 1136749 | 1136973 | - | NZ_CP060052.1 | Croceicoccus marinus |
| 206 | 1353557 | 1353781 | + | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 207 | 983300 | 983548 | + | NZ_AP019773.1 | Bartonella quintana |
| 208 | 640794 | 641048 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 209 | 2979353 | 2979577 | - | NZ_CP045434.1 | Sphingomonas ginsengisoli An et al. 2013 |
| 210 | 2851867 | 2852091 | + | NZ_CP016033.1 | Erythrobacter neustonensis |
| 211 | 1728897 | 1729130 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 212 | 2910881 | 2911105 | - | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 213 | 1980667 | 1980891 | + | NZ_CP060718.1 | Sphingomonas lutea |
| 214 | 1607257 | 1607481 | - | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 215 | 2107376 | 2107600 | + | NZ_CP053921.1 | Erythrobacter mangrovi |
| 216 | 257597 | 257821 | + | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 217 | 2368026 | 2368274 | - | NZ_CP072611.1 | Aureimonas populi |
| 218 | 2015527 | 2015751 | - | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 219 | 1117068 | 1117295 | - | NC_020908.1 | Octadecabacter arcticus 238 |
| 220 | 81753 | 81977 | - | NC_009511.1 | Sphingomonas wittichii RW1 |
| 221 | 1638430 | 1638654 | - | NZ_CP060782.1 | Sphingomonas sediminicola |
| 222 | 2000803 | 2001027 | + | NC_008048.1 | Sphingopyxis alaskensis RB2256 |
| 223 | 1750568 | 1750822 | + | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 224 | 2821019 | 2821246 | + | NC_020911.1 | Octadecabacter antarcticus 307 |
| 225 | 2391388 | 2391612 | - | NZ_CP060780.1 | Sphingomonas daechungensis |
| 226 | 1928598 | 1928825 | + | NZ_CP012160.1 | Octadecabacter temperatus |
| 227 | 839399 | 839623 | - | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 228 | 1983494 | 1983730 | + | NZ_CP044331.1 | Methylocystis parvus |
| 229 | 2407072 | 2407296 | - | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 230 | 4896873 | 4897130 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 231 | 735207 | 735446 | - | NZ_CP012946.1 | Blastochloris viridis |
| 232 | 490521 | 490754 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 233 | 2013231 | 2013458 | + | NZ_CP035510.1 | Haematobacter massiliensis |
| 234 | 2095103 | 2095327 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 235 | 2178365 | 2178592 | + | NZ_CP025583.1 | Paracoccus jeotgali |
| 236 | 2603436 | 2603681 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 237 | 61514 | 61699 | + | NZ_AP019864.1 | Rickettsia heilongjiangensis |
| 238 | 531393 | 531638 | - | NZ_CP071057.1 | Marinicauda algicola |
| 239 | 892318 | 892545 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 240 | 1079131 | 1079358 | - | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 241 | 1745950 | 1746144 | - | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 242 | 1243933 | 1244166 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 243 | 52818 | 53003 | + | NC_009881.1 | Rickettsia akari str. Hartford |
| 244 | 985996 | 986238 | + | NC_011666.1 | Methylocella silvestris BL2 |
| 245 | 44465 | 44650 | + | NC_016929.1 | Rickettsia canadensis str. CA410 |
| 246 | 59833 | 60018 | + | NC_010263.3 | Rickettsia rickettsii str. Iowa |
| 247 | 57086 | 57271 | + | NC_003103.1 | Rickettsia conorii str. Malish 7 |
| 248 | 60310 | 60495 | + | NC_016639.1 | Rickettsia slovaca 13-B |
| 249 | 84177 | 84362 | + | NC_017058.1 | Rickettsia australis str. Cutlack |
| 250 | 206949 | 207134 | - | NZ_AP019563.1 | Rickettsia asiatica |
| 251 | 4758239 | 4758478 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 252 | 139610 | 139795 | - | NC_007940.1 | Rickettsia bellii RML369-C |
| 253 | 5314715 | 5314957 | + | NZ_CP021112.1 | Pseudorhodoplanes sinuspersici |
| 254 | 1460735 | 1460935 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 255 | 2140996 | 2141196 | - | NC_013861.1 | Legionella longbeachae NSW150 |
| 256 | 2635956 | 2636198 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 257 | 285565 | 285792 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 258 | 357616 | 357801 | - | NZ_LN794217.1 | Rickettsia monacensis |
| 259 | 1660708 | 1660932 | + | NC_019940.1 | Thioflavicoccus mobilis 8321 |
| 260 | 2910574 | 2910813 | + | NZ_AP018907.1 | Blastochloris tepida |
| 261 | 454833 | 455027 | - | NC_014817.1 | Asticcacaulis excentricus CB 48 |
| 262 | 1277597 | 1277821 | - | NC_018012.1 | Thiocystis violascens DSM 198 |
| 263 | 347775 | 348005 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 264 | 2310537 | 2310764 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 265 | 462986 | 463183 | + | NZ_LR699114.1 | Aquicella lusitana |
| 266 | 1339898 | 1340122 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 267 | 3628286 | 3628510 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 268 | 950541 | 950765 | - | NZ_LR134167.1 | Avibacterium volantium |
| 269 | 834295 | 834522 | - | NZ_CP007445.1 | Gilliamella apicola |
| 270 | 1319776 | 1320000 | + | NZ_AP014879.1 | Sulfuricaulis limicola |
| 271 | 2186730 | 2186957 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 272 | 4005247 | 4005474 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 273 | 574959 | 575186 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 274 | 587851 | 588078 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 275 | 1725347 | 1725571 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 276 | 2547143 | 2547373 | + | NZ_CP061205.1 | Kordiimonas pumila |
| 277 | 2005167 | 2005364 | - | NZ_LR699119.1 | Aquicella siphonis |
| 278 | 992964 | 993188 | + | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 279 | 1981755 | 1981940 | - | NZ_AP012273.1 | Thiolapillus brandeum |
| 280 | 1160674 | 1160901 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 281 | 1441021 | 1441248 | - | NZ_CP037953.1 | Permianibacter aggregans |
| 282 | 1888009 | 1888248 | - | NC_015713.1 | Simkania negevensis Z |
| 283 | 456340 | 456564 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 284 | 1004232 | 1004423 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 285 | 884777 | 885025 | - | NC_022439.1 | Chlamydia pecorum PV3056/3 |
| 286 | 1420384 | 1420599 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 287 | 2297956 | 2298180 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 288 | 268331 | 268573 | + | NC_014926.1 | Thermovibrio ammonificans HB-1 |
| 289 | 2881559 | 2881801 | + | NZ_CP019948.1 | Methylocystis bryophila |
| 290 | 2405324 | 2405554 | - | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
| 291 | 1898637 | 1898831 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 292 | 2046442 | 2046666 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 293 | 5695098 | 5695322 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 294 | 4497450 | 4497677 | + | NZ_CP028897.1 | Dongshaea marina |
| 295 | 939007 | 939252 | + | NC_000117.1 | Chlamydia trachomatis D/UW-3/CX |
| 296 | 218357 | 218602 | + | NC_002620.2 | Chlamydia muridarum str. Nigg |
| 297 | 998423 | 998668 | + | NZ_LS398098.1 | Chlamydia suis |
| 298 | 295601 | 295828 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 299 | 104782 | 105009 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 300 | 2372962 | 2373189 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 301 | 3166207 | 3166434 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 302 | 2589343 | 2589570 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 303 | 656981 | 657208 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 304 | 718296 | 718523 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 305 | 2862233 | 2862460 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 306 | 724793 | 725020 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 307 | 2974070 | 2974297 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 308 | 2942752 | 2942979 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 309 | 760643 | 760870 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 310 | 262873 | 263100 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 311 | 476392 | 476619 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 312 | 611758 | 611985 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 313 | 550045 | 550272 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 314 | 1814942 | 1815169 | - | NZ_CP016604.1 | Otariodibacter oris |
| 315 | 566597 | 566824 | + | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 316 | 1049214 | 1049441 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 317 | 980288 | 980515 | + | NZ_CP061280.1 | Mannheimia bovis |
| 318 | 2137242 | 2137469 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 319 | 1856679 | 1856906 | - | NZ_CP016180.1 | Pasteurella skyensis |
| 320 | 1064130 | 1064357 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 321 | 1388340 | 1388567 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 322 | 1478073 | 1478300 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 323 | 146354 | 146581 | + | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 324 | 174270 | 174497 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 325 | 680613 | 680840 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 326 | 2159655 | 2159885 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 327 | 1621563 | 1621790 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 328 | 721872 | 722102 | - | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 329 | 278736 | 278966 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 330 | 95611 | 95841 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 331 | 2356736 | 2356960 | - | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 332 | 828274 | 828504 | + | NZ_CP029556.1 | Lysobacter oculi |
| 333 | 3373309 | 3373536 | - | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 334 | 4405778 | 4405993 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 335 | 3192635 | 3192862 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 336 | 2559278 | 2559505 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 337 | 745249 | 745476 | + | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 338 | 2185441 | 2185671 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 339 | 4251932 | 4252147 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 340 | 1762085 | 1762327 | - | NZ_CP066065.1 | Schaalia meyeri |
| 341 | 2186311 | 2186553 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 342 | 2386592 | 2386816 | - | NZ_CP016268.1 | Woeseia oceani |
| 343 | 4223412 | 4223633 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 344 | 3958566 | 3958802 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 345 | 883225 | 883449 | + | NC_014225.1 | Waddlia chondrophila WSU 86-1044 |
| 346 | 1408503 | 1408745 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 347 | 5244551 | 5244736 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 348 | 187650 | 187865 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 349 | 2403414 | 2403635 | - | NZ_CP044548.2 | Janibacter melonis |
| 350 | 662969 | 663199 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 351 | 3314830 | 3315045 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 352 | 4721125 | 4721340 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 353 | 3985139 | 3985360 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 354 | 409910 | 410152 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 355 | 4486789 | 4487004 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 356 | 1066737 | 1066952 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 357 | 6120670 | 6120885 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 358 | 511384 | 511605 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 359 | 6236990 | 6237223 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 360 | 3098413 | 3098628 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 361 | 552173 | 552394 | + | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 362 | 254177 | 254404 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 363 | 3320085 | 3320312 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 364 | 41552 | 41773 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 365 | 3629053 | 3629286 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 366 | 633744 | 633968 | + | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 367 | 5084171 | 5084404 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 368 | 3541208 | 3541435 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 369 | 2489587 | 2489802 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 370 | 6575108 | 6575344 | + | NZ_CP048882.1 | Streptomyces bathyalis |
| 371 | 4259982 | 4260215 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 372 | 2824877 | 2825098 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 373 | 4875505 | 4875738 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 374 | 4085318 | 4085554 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 375 | 3710764 | 3710985 | - | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 376 | 1549785 | 1549997 | + | NZ_LR134365.1 | Cardiobacterium hominis |
| 377 | 3608357 | 3608593 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 378 | 4480332 | 4480565 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 379 | 3975101 | 3975334 | + | NZ_CP022310.1 | Streptomyces calvus |
| 380 | 3234847 | 3235092 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 381 | 3494187 | 3494423 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 382 | 4489948 | 4490181 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 383 | 573546 | 573779 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 384 | 4009392 | 4009640 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 385 | 3771617 | 3771829 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 386 | 7192288 | 7192524 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 387 | 4889394 | 4889627 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 388 | 5313642 | 5313875 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 389 | 5919639 | 5919875 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 390 | 6423457 | 6423696 | - | NC_020990.1 | Streptomyces albidoflavus |
| 391 | 5693809 | 5694048 | + | NZ_CP022744.1 | Streptomyces lincolnensis |
| 392 | 3859203 | 3859436 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 393 | 2373315 | 2373551 | + | NZ_CP036402.1 | Egibacter rhizosphaerae |
| 394 | 7483720 | 7483920 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 395 | 5670601 | 5670837 | + | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 396 | 7564837 | 7565073 | - | NZ_CP019457.1 | Streptomyces lydicus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012026.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 0.91 | 359 | 22 | same-strand | Ribosomal protein S6 |
| 2 | PF03948.16 | 0.9 | 356 | 21.0 | same-strand | Ribosomal protein L9, C-terminal domain |
| 3 | PF01281.21 | 0.89 | 354 | 20.5 | same-strand | Ribosomal protein L9, N-terminal domain |
++ More..