Result : Q5L566
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CR848038.1 |
| Organism | Chlamydia abortus (strain DSM 27085 / S26/3) (Chlamydophila abortus) |
| Left | 914766 |
| Right | 915029 |
| Strand | - |
| Nucleotide Sequence | ATGAATAAGCCTGTTCATAATAAGCCTGTTCATAATAATGAACACAGAAGGAAGCGTTTTAATAAGAAATGCCCTTTTGTTTCCGCAGGTTGGAAAACAATCGATTACAAAGATACGGAAACTTTAAAAAAATTTATCACGGAAAAAGGTAAGATCTTACCTAGAAGAATTACAGGTGTCTCTTCCCGCTTTCAAGGTATTCTTACCCTAGCTATTAAGAGAGCGCGTCATATAGGGTTTCTACCTTTTGTAGGAGAAGATTAA |
| Sequence | MNKPVHNKPVHNNEHRRKRFNKKCPFVSAGWKTIDYKDTETLKKFITEKGKILPRRITGVSSRFQGILTLAIKRARHIGFLPFVGED |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 15837807 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q5L566 |
| ORF Length (Amino Acid) | 87 |
++ More..
| Conservation Analysis |
No. of Species: 196
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 229416 | 229664 | + | NC_007899.1 | Chlamydia felis Fe/C-56 |
| 2 | 941821 | 942069 | - | NC_017287.1 | Chlamydia psittaci 6BC |
| 3 | 206326 | 206574 | - | NZ_CP015840.1 | Chlamydia gallinacea 08-1274/3 |
| 4 | 941357 | 941605 | - | NC_003361.3 | Chlamydia caviae GPIC |
| 5 | 1084828 | 1085076 | + | NC_005043.1 | Chlamydia pneumoniae TW-183 |
| 6 | 884777 | 885025 | - | NC_022439.1 | Chlamydia pecorum PV3056/3 |
| 7 | 939007 | 939252 | + | NC_000117.1 | Chlamydia trachomatis D/UW-3/CX |
| 8 | 218357 | 218602 | + | NC_002620.2 | Chlamydia muridarum str. Nigg |
| 9 | 998423 | 998668 | + | NZ_LS398098.1 | Chlamydia suis |
| 10 | 883225 | 883449 | + | NC_014225.1 | Waddlia chondrophila WSU 86-1044 |
| 11 | 1793085 | 1793342 | - | NC_015702.1 | Parachlamydia acanthamoebae UV-7 |
| 12 | 3245955 | 3246191 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 13 | 3264952 | 3265188 | - | NZ_CP016538.2 | Planococcus maritimus |
| 14 | 3266981 | 3267217 | - | NZ_CP059540.1 | Planococcus maritimus |
| 15 | 3171906 | 3172142 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 16 | 4068700 | 4068933 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 17 | 498628 | 498864 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 18 | 6248475 | 6248726 | - | NC_015703.1 | Runella slithyformis DSM 19594 |
| 19 | 3289883 | 3290119 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 20 | 3409231 | 3409467 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 21 | 1778643 | 1778879 | + | NZ_CP013661.2 | Planococcus kocurii |
| 22 | 3480364 | 3480600 | - | NZ_CP019401.1 | Planococcus faecalis |
| 23 | 3749924 | 3750160 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 24 | 4085277 | 4085510 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 25 | 2151324 | 2151551 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 26 | 186539 | 186781 | + | NC_010163.1 | Acholeplasma laidlawii PG-8A |
| 27 | 3611401 | 3611628 | - | NZ_CP019699.1 | Novibacillus thermophilus |
| 28 | 27959 | 28183 | + | NZ_CP011361.2 | Salimicrobium jeotgali |
| 29 | 3234204 | 3234440 | - | NZ_CP016540.2 | Planococcus versutus |
| 30 | 1054959 | 1055201 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 31 | 3148657 | 3148881 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 32 | 2290614 | 2290841 | + | NZ_CP035485.1 | Salicibibacter halophilus |
| 33 | 5213716 | 5213949 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 34 | 3221645 | 3221899 | + | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 35 | 1007105 | 1007356 | - | NC_017448.1 | Fibrobacter succinogenes subsp. succinogenes S85 |
| 36 | 409910 | 410152 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 37 | 2699284 | 2699514 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 38 | 5236789 | 5237022 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 39 | 5434274 | 5434507 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 40 | 1730617 | 1730856 | - | NC_012924.1 | Streptococcus suis SC84 |
| 41 | 5133380 | 5133613 | + | NZ_CP040336.1 | Bacillus luti |
| 42 | 5405331 | 5405564 | - | NC_011725.1 | Bacillus cereus B4264 |
| 43 | 1236113 | 1236340 | + | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 44 | 1882127 | 1882360 | + | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 45 | 735459 | 735704 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 46 | 2947279 | 2947503 | - | NZ_CP016379.1 | Anoxybacter fermentans |
| 47 | 3533495 | 3533719 | - | NZ_LR699011.1 | Roseburia hominis |
| 48 | 4340840 | 4341064 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 49 | 631066 | 631302 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 50 | 752145 | 752408 | + | NZ_CP060723.1 | Pedobacter roseus |
| 51 | 2724184 | 2724423 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 52 | 1997797 | 1998042 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 53 | 4744927 | 4745184 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 54 | 124103 | 124348 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 55 | 631294 | 631557 | + | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 56 | 3541208 | 3541435 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 57 | 1440231 | 1440461 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 58 | 4090607 | 4090831 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 59 | 4665192 | 4665416 | + | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 60 | 320531 | 320755 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 61 | 3465734 | 3465958 | + | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 62 | 3929923 | 3930195 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 63 | 1071741 | 1071971 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 64 | 5244769 | 5245026 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 65 | 194241 | 194480 | + | NZ_CP014176.1 | Clostridium argentinense |
| 66 | 4906713 | 4906937 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 67 | 3444944 | 3445204 | + | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 68 | 307055 | 307282 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 69 | 2421206 | 2421472 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 70 | 1529624 | 1529887 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 71 | 1193348 | 1193575 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
| 72 | 2834825 | 2835115 | - | NZ_CP040709.1 | Inhella inkyongensis |
| 73 | 1904869 | 1905084 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 74 | 2230117 | 2230392 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 75 | 7223 | 7486 | - | NZ_AP021875.1 | Desulfosarcina widdelii |
| 76 | 61554 | 61778 | + | NZ_LR134524.1 | Peptoniphilus harei |
| 77 | 1349507 | 1349782 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 78 | 794333 | 794608 | - | NZ_CP035900.1 | Burkholderia glumae |
| 79 | 2654877 | 2655152 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 80 | 261121 | 261348 | - | NZ_CP039731.1 | Aquitalea aquatilis |
| 81 | 1455404 | 1455631 | + | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 82 | 3790018 | 3790233 | - | NZ_CP040924.1 | Clostridium thermarum |
| 83 | 2702202 | 2702429 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 84 | 695744 | 695971 | + | NZ_CP047241.1 | Aquitalea denitrificans |
| 85 | 3938126 | 3938353 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 86 | 653726 | 653953 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 87 | 1961015 | 1961242 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 88 | 1483282 | 1483509 | - | NZ_AP021889.1 | Thiosulfatimonas sediminis |
| 89 | 2868162 | 2868377 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 90 | 3781074 | 3781310 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 91 | 1404197 | 1404418 | - | NZ_CP023276.1 | Polynucleobacter difficilis |
| 92 | 428541 | 428804 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 93 | 3240554 | 3240796 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 94 | 1048281 | 1048508 | + | NZ_AP020335.1 | Hydrogenovibrio marinus |
| 95 | 40525 | 40758 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 96 | 3056858 | 3057073 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 97 | 262638 | 262871 | + | NZ_CP020921.1 | Thermodesulfobium acidiphilum |
| 98 | 2860392 | 2860673 | + | NZ_CP061799.1 | Desulfonema limicola |
| 99 | 1711118 | 1711333 | - | NZ_CP023671.1 | Clostridium septicum |
| 100 | 2179982 | 2180245 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 101 | 2145258 | 2145533 | - | NZ_CP013401.1 | Burkholderia metallica |
| 102 | 2219790 | 2220065 | - | NC_007510.1 | Burkholderia lata |
| 103 | 1303265 | 1303492 | + | NZ_CP054020.1 | Thiomicrorhabdus xiamenensis |
| 104 | 2125651 | 2125926 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 105 | 2155205 | 2155480 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 106 | 8553 | 8816 | - | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 107 | 1350587 | 1350862 | + | NC_021287.1 | Caballeronia insecticola |
| 108 | 1000621 | 1000875 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 109 | 1493723 | 1493971 | - | NZ_CP058235.1 | Bartonella alsatica |
| 110 | 2373150 | 2373377 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 111 | 1288244 | 1288492 | - | NZ_CP031843.2 | Bartonella kosoyi |
| 112 | 2740337 | 2740561 | - | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 113 | 357774 | 358004 | + | NC_018024.1 | Acetomicrobium mobile DSM 13181 |
| 114 | 1881906 | 1882142 | - | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 115 | 2081847 | 2082122 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 116 | 1567496 | 1567723 | - | NZ_CP035033.1 | Hydrogenovibrio thermophilus |
| 117 | 2805029 | 2805244 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 118 | 565830 | 566078 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 119 | 654614 | 654847 | + | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 120 | 1943842 | 1944078 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 121 | 2222500 | 2222733 | - | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 122 | 2881245 | 2881502 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 123 | 10358 | 10597 | + | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 124 | 10147 | 10389 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 125 | 861056 | 861304 | - | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 126 | 2670406 | 2670630 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 127 | 2879933 | 2880196 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 128 | 2142399 | 2142662 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 129 | 742845 | 743093 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 130 | 132249 | 132464 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 131 | 25221 | 25442 | + | NZ_CP006681.1 | Spiroplasma culicicola AES-1 |
| 132 | 1466335 | 1466562 | - | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 133 | 6514802 | 6515017 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 134 | 5487242 | 5487508 | + | NZ_AP017422.1 | Filimonas lacunae |
| 135 | 1213096 | 1213320 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 136 | 5924001 | 5924216 | - | NZ_CP043998.1 | Clostridium diolis |
| 137 | 99645 | 99917 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 138 | 1465742 | 1465963 | - | NZ_CP007501.1 | Polynucleobacter duraquae |
| 139 | 411517 | 411738 | + | NC_009379.1 | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| 140 | 1269151 | 1269366 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 141 | 5695098 | 5695322 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 142 | 3520396 | 3520644 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 143 | 1607257 | 1607481 | - | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 144 | 519963 | 520211 | - | NZ_CP031844.2 | Bartonella krasnovii |
| 145 | 1215656 | 1215904 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 146 | 1245080 | 1245328 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 147 | 1013984 | 1014232 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 148 | 1500320 | 1500568 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 149 | 1109372 | 1109620 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 150 | 766469 | 766717 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 151 | 1143064 | 1143285 | - | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 152 | 24037 | 24258 | + | NC_021846.1 | Spiroplasma taiwanense CT-1 |
| 153 | 24267 | 24488 | + | NC_022998.1 | Spiroplasma apis B31 |
| 154 | 911583 | 911831 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 155 | 1292907 | 1293155 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 156 | 1753416 | 1753691 | - | NC_015681.1 | Thermodesulfatator indicus DSM 15286 |
| 157 | 254177 | 254404 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 158 | 671125 | 671346 | - | NZ_CP023668.1 | Mesoplasma lactucae ATCC 49193 |
| 159 | 24335 | 24556 | + | NC_021833.1 | Spiroplasma diminutum CUAS-1 |
| 160 | 4405778 | 4405993 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 161 | 920027 | 920254 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 162 | 8962 | 9183 | - | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 163 | 3320085 | 3320312 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 164 | 24289 | 24510 | + | NZ_CP025543.1 | Spiroplasma monobiae MQ-1 |
| 165 | 1950205 | 1950471 | + | NC_007759.1 | Syntrophus aciditrophicus SB |
| 166 | 1116636 | 1116902 | - | NC_014217.1 | Starkeya novella DSM 506 |
| 167 | 268331 | 268573 | + | NC_014926.1 | Thermovibrio ammonificans HB-1 |
| 168 | 25062 | 25286 | + | NZ_CP046276.1 | Spiroplasma tabanidicola |
| 169 | 24389 | 24613 | + | NZ_CP038013.1 | Spiroplasma gladiatoris |
| 170 | 2686490 | 2686717 | - | NZ_CP034118.1 | Staphylospora marina |
| 171 | 956009 | 956236 | - | NC_015581.1 | Thiomicrospira cyclica ALM1 |
| 172 | 1009049 | 1009276 | + | NZ_CP007030.1 | Thiomicrospira aerophila AL3 |
| 173 | 1347635 | 1347883 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 174 | 1476430 | 1476678 | - | NZ_CP020906.1 | Rhizobium etli |
| 175 | 1487534 | 1487782 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 176 | 2878878 | 2879126 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 177 | 1549006 | 1549254 | - | NZ_CP013500.1 | Rhizobium esperanzae |
| 178 | 1532018 | 1532266 | - | NZ_CP071604.1 | Rhizobium binae |
| 179 | 3361168 | 3361416 | - | NZ_CP071454.1 | Rhizobium lentis |
| 180 | 1514813 | 1515061 | - | NZ_CP013532.1 | Rhizobium phaseoli |
| 181 | 1062770 | 1063018 | + | NZ_CP054021.1 | Rhizobium indicum |
| 182 | 1756634 | 1756882 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 183 | 2359868 | 2360116 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 184 | 735304 | 735552 | - | NZ_CP053856.1 | Rhizobium pusense |
| 185 | 728374 | 728622 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 186 | 2607480 | 2607707 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 187 | 22619 | 22843 | + | NZ_CP022535.1 | Spiroplasma corruscae |
| 188 | 27059 | 27280 | + | NZ_CP043026.1 | Spiroplasma chinense |
| 189 | 3089781 | 3090029 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 190 | 569416 | 569643 | - | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 191 | 7363 | 7626 | - | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 192 | 1698704 | 1698934 | + | NC_015572.1 | Methylomonas methanica MC09 |
| 193 | 286589 | 286822 | + | NC_015499.1 | Thermodesulfobium narugense DSM 14796 |
| 194 | 139293 | 139568 | + | NZ_CP042909.1 | Thermosulfurimonas marina |
| 195 | 3970786 | 3971052 | + | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 196 | 6361862 | 6362128 | + | NC_016609.1 | Niastella koreensis GR20-10 |
| 197 | 4926551 | 4926817 | + | NZ_CP032157.1 | Paraflavitalea soli |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007899.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 0.94 | 185 | 324.0 | same-strand | Ribosomal protein S6 |
| 2 | PF01281.21 | 0.91 | 179 | 1054.5 | same-strand | Ribosomal protein L9, N-terminal domain |
| 3 | PF03948.16 | 0.91 | 179 | 1054.5 | same-strand | Ribosomal protein L9, C-terminal domain |
++ More..