Result : A8FZ21
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein Ssed_3490 |
| NCBI Accession ID | CP000821.1 |
| Organism | Shewanella sediminis (strain HAW-EB3) |
| Left | 4248948 |
| Right | 4249214 |
| Strand | + |
| Nucleotide Sequence | ATGTTAGATACAAAATTTGATGAACTCATGGAGTTTCCATGTGCATTTCCATATAAAGTTGTAGGTGACGCCAGTAGCACGCTTGCTGATAGAGTTGTGGAAGTCGTTCAACGACATGTTCCTGGCGACTATGCGCCGACATCCAAAACCTCGAGTAAAGGAACGTACAACTCAATCACTATTAGAGTTACGGTGCAAAGCAAGGAACAGGTTGAGACCCTTTATACCGAACTTGCTGCCATTGAAGGTGTTAAACGCGTTCTTTAA |
| Sequence | MLDTKFDELMEFPCAFPYKVVGDASSTLADRVVEVVQRHVPGDYAPTSKTSSKGTYNSITIRVTVQSKEQVETLYTELAAIEGVKRVL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | A8FZ21 |
| ORF Length (Amino Acid) | 88 |
++ More..
| Conservation Analysis |
No. of Species: 279
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4248948 | 4249214 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 2 | 4519885 | 4520151 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 3 | 4970774 | 4971040 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 4 | 3864070 | 3864336 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 5 | 3859846 | 3860112 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 6 | 3225938 | 3226204 | - | NZ_CP037951.1 | Parashewanella tropica |
| 7 | 4026459 | 4026725 | + | NC_016901.1 | Shewanella baltica OS678 |
| 8 | 1065318 | 1065584 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 9 | 3613986 | 3614252 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 10 | 2730654 | 2730920 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 11 | 3101547 | 3101813 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 12 | 991228 | 991494 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 13 | 3480004 | 3480270 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 14 | 3064634 | 3064900 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 15 | 3945792 | 3946058 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 16 | 4141190 | 4141456 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 17 | 3774664 | 3774930 | + | NZ_CP046378.1 | Shewanella algae |
| 18 | 992466 | 992732 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 19 | 2664823 | 2665086 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 20 | 1454927 | 1455193 | + | NZ_CP036200.1 | Shewanella maritima |
| 21 | 883501 | 883767 | - | NZ_CP041036.1 | Shewanella polaris |
| 22 | 1207354 | 1207620 | - | NZ_CP020472.1 | Shewanella japonica |
| 23 | 4308808 | 4309074 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 24 | 4114772 | 4115038 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 25 | 819389 | 819655 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 26 | 3113782 | 3114045 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 27 | 2745526 | 2745801 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 28 | 2933509 | 2933772 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 29 | 1157226 | 1157489 | - | NZ_AP022188.1 | Aeromonas media |
| 30 | 653613 | 653876 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 31 | 3291080 | 3291349 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 32 | 2460180 | 2460443 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 33 | 4089105 | 4089368 | + | NZ_CP028897.1 | Dongshaea marina |
| 34 | 3714178 | 3714441 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 35 | 1097442 | 1097705 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 36 | 2738332 | 2738595 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 37 | 489467 | 489733 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 38 | 1390741 | 1391016 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 39 | 41250 | 41513 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 40 | 1416025 | 1416288 | - | NZ_LR134531.1 | Pragia fontium |
| 41 | 894225 | 894488 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 42 | 1024316 | 1024582 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 43 | 8578 | 8841 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 44 | 3265556 | 3265798 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 45 | 2375913 | 2376176 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 46 | 553236 | 553499 | - | NZ_CP028271.1 | Mixta intestinalis |
| 47 | 2167850 | 2168113 | + | NZ_CP044060.1 | Aeromonas veronii |
| 48 | 305717 | 305980 | + | NZ_CP019706.1 | Pantoea alhagi |
| 49 | 2080582 | 2080845 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 50 | 3273670 | 3273933 | + | NZ_LS483422.1 | Providencia heimbachae |
| 51 | 2412128 | 2412370 | + | NZ_LS483250.1 | Moritella yayanosii |
| 52 | 3821998 | 3822264 | + | NZ_CP071320.1 | Serratia ureilytica |
| 53 | 542408 | 542674 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 54 | 1236711 | 1236977 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 55 | 2460154 | 2460417 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 56 | 4754679 | 4754945 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 57 | 3056357 | 3056620 | + | NZ_LT615367.1 | Dickeya aquatica |
| 58 | 2260301 | 2260564 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 59 | 4198399 | 4198662 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 60 | 1316418 | 1316684 | - | NZ_LT906479.1 | Serratia ficaria |
| 61 | 3384788 | 3385051 | + | NZ_CP048796.1 | Providencia vermicola |
| 62 | 3457693 | 3457959 | - | NZ_CP011254.1 | Serratia fonticola |
| 63 | 643807 | 644070 | - | NZ_CP040449.1 | Aeromonas simiae |
| 64 | 1237093 | 1237356 | - | NZ_LR134494.1 | Serratia quinivorans |
| 65 | 658656 | 658919 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 66 | 2510821 | 2511096 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 67 | 462430 | 462693 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 68 | 2383461 | 2383712 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 69 | 921440 | 921703 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 70 | 2835204 | 2835467 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 71 | 715224 | 715487 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 72 | 1280113 | 1280376 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 73 | 2619386 | 2619649 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 74 | 2874493 | 2874756 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 75 | 1288997 | 1289260 | - | NZ_CP061511.1 | Mixta calida |
| 76 | 198222 | 198485 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 77 | 2241314 | 2241577 | + | NZ_CP067057.1 | Rahnella aceris |
| 78 | 2613175 | 2613438 | - | NZ_CP026364.1 | Proteus hauseri |
| 79 | 1389260 | 1389523 | - | NZ_CP026377.1 | Mixta gaviniae |
| 80 | 1244813 | 1245076 | - | NC_015968.1 | Enterobacter soli |
| 81 | 2230608 | 2230871 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 82 | 2791045 | 2791308 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 83 | 4092934 | 4093197 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 84 | 2975930 | 2976193 | - | NZ_CP007230.1 | Yersinia similis |
| 85 | 1183373 | 1183636 | - | NZ_CP065534.1 | Lonsdalea populi |
| 86 | 3240175 | 3240438 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 87 | 4359114 | 4359377 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 88 | 1012692 | 1012958 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 89 | 2256887 | 2257150 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 90 | 3365638 | 3365901 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 91 | 3517599 | 3517862 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 92 | 1981340 | 1981603 | + | NZ_CP038469.1 | Citrobacter tructae |
| 93 | 925654 | 925917 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 94 | 4191671 | 4191934 | - | NZ_CP033744.1 | Citrobacter freundii |
| 95 | 3811852 | 3812115 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 96 | 1291151 | 1291414 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 97 | 1283523 | 1283786 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 98 | 1239709 | 1239972 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 99 | 1272043 | 1272306 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 100 | 1310749 | 1311012 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 101 | 469556 | 469819 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 102 | 1486484 | 1486747 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 103 | 4179283 | 4179546 | - | NZ_CP009787.1 | Yersinia rohdei |
| 104 | 1277638 | 1277901 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 105 | 1891773 | 1892036 | - | NZ_CP029736.1 | Providencia rettgeri |
| 106 | 2742706 | 2742969 | + | NZ_CP032487.1 | Yersinia hibernica |
| 107 | 3337523 | 3337786 | + | NZ_CP043727.1 | Yersinia canariae |
| 108 | 2904325 | 2904603 | + | NC_013456.1 | Vibrio antiquarius |
| 109 | 712881 | 713132 | - | NZ_CP030788.1 | Vibrio campbellii |
| 110 | 1085411 | 1085662 | + | NZ_CP019959.1 | Vibrio owensii |
| 111 | 956871 | 957122 | - | NZ_CP009467.1 | Vibrio harveyi |
| 112 | 1391391 | 1391654 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 113 | 405762 | 406025 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 114 | 1501828 | 1502091 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 115 | 3484334 | 3484597 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 116 | 1379959 | 1380222 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 117 | 1421817 | 1422080 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 118 | 2506636 | 2506914 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 119 | 1359447 | 1359710 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 120 | 1181384 | 1181647 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 121 | 1125017 | 1125280 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 122 | 2500937 | 2501200 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 123 | 3172115 | 3172378 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 124 | 3728248 | 3728511 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 125 | 3357763 | 3358026 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 126 | 1216042 | 1216305 | - | NZ_CP050150.1 | Hafnia alvei |
| 127 | 2706219 | 2706485 | - | NZ_CP065640.1 | Serratia rubidaea |
| 128 | 2812093 | 2812356 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 129 | 3187336 | 3187599 | - | NZ_CP053416.1 | Salmonella bongori |
| 130 | 2333977 | 2334240 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 131 | 710219 | 710482 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 132 | 807555 | 807797 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 133 | 831768 | 832046 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 134 | 1160808 | 1161071 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 135 | 698032 | 698295 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 136 | 3223049 | 3223312 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 137 | 886960 | 887238 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 138 | 1012572 | 1012814 | - | NZ_CP046268.1 | Vibrio spartinae |
| 139 | 4089216 | 4089479 | + | NZ_CP050508.1 | Raoultella terrigena |
| 140 | 215216 | 215482 | - | NZ_CP007445.1 | Gilliamella apicola |
| 141 | 2383926 | 2384177 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 142 | 1494509 | 1494760 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 143 | 772608 | 772883 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 144 | 3726553 | 3726822 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 145 | 3079065 | 3079328 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 146 | 1301235 | 1301498 | - | NZ_LR134340.1 | Escherichia marmotae |
| 147 | 1522983 | 1523246 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 148 | 687879 | 688142 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 149 | 662379 | 662642 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 150 | 634675 | 634938 | - | NZ_AP014857.1 | Escherichia albertii |
| 151 | 743737 | 744000 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 152 | 2907591 | 2907854 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 153 | 2160101 | 2160379 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 154 | 2509058 | 2509309 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 155 | 2247601 | 2247876 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 156 | 1358237 | 1358500 | - | NZ_CP046293.1 | Yersinia intermedia |
| 157 | 2565986 | 2566252 | + | NZ_CP009056.1 | Frischella perrara |
| 158 | 2317106 | 2317369 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 159 | 1258807 | 1259070 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 160 | 3718353 | 3718616 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 161 | 1561372 | 1561635 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 162 | 3974527 | 3974790 | + | NZ_CP054254.1 | Klebsiella variicola |
| 163 | 1178382 | 1178645 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 164 | 2545043 | 2545306 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 165 | 744200 | 744475 | - | NC_011753.2 | Vibrio atlanticus |
| 166 | 1251512 | 1251775 | - | NZ_CP015581.1 | Tatumella citrea |
| 167 | 1508430 | 1508705 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 168 | 3756390 | 3756653 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 169 | 3270955 | 3271218 | - | NZ_CP026047.1 | Raoultella planticola |
| 170 | 3948614 | 3948877 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 171 | 2089894 | 2090163 | - | NZ_CP014056.2 | Grimontia hollisae |
| 172 | 893757 | 894026 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 173 | 2529410 | 2529685 | + | NZ_AP014635.1 | Vibrio tritonius |
| 174 | 959164 | 959439 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 175 | 2256994 | 2257272 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 176 | 120897 | 121190 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 177 | 3798335 | 3798598 | + | NZ_CP041247.1 | Raoultella electrica |
| 178 | 397124 | 397387 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 179 | 419078 | 419374 | + | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 180 | 1411811 | 1412074 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 181 | 712271 | 712546 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 182 | 2134830 | 2135105 | + | NZ_AP019657.1 | Vibrio ponticus |
| 183 | 1096947 | 1097210 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 184 | 3012718 | 3012981 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 185 | 2663538 | 2663801 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 186 | 1904718 | 1904969 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 187 | 3145000 | 3145263 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 188 | 1264715 | 1264978 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 189 | 2216504 | 2216725 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 190 | 758991 | 759230 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 191 | 1175690 | 1175968 | - | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 192 | 859935 | 860213 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 193 | 4044942 | 4045205 | - | NZ_CP049115.1 | Pantoea stewartii |
| 194 | 3293298 | 3293561 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 195 | 2963233 | 2963496 | + | NZ_CP038853.1 | Pantoea vagans |
| 196 | 709087 | 709326 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 197 | 1216301 | 1216564 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 198 | 1932912 | 1933190 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 199 | 2637776 | 2638039 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 200 | 1351271 | 1351522 | - | NZ_CP040990.1 | Vibrio furnissii |
| 201 | 1961134 | 1961373 | + | NZ_CP033078.1 | Vibrio zhugei |
| 202 | 370845 | 371144 | - | NZ_CP046531.1 | Mannheimia ovis |
| 203 | 398199 | 398498 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 204 | 1046300 | 1046575 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 205 | 1753241 | 1753510 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 206 | 545087 | 545350 | - | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 207 | 1758914 | 1759177 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 208 | 1084196 | 1084465 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 209 | 1023292 | 1023564 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 210 | 558447 | 558689 | - | NZ_CP035688.1 | Vibrio metoecus |
| 211 | 497438 | 497737 | + | NZ_CP061280.1 | Mannheimia bovis |
| 212 | 2304240 | 2304542 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 213 | 965375 | 965614 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 214 | 219494 | 219763 | + | NZ_CP022355.1 | Paraphotobacterium marinum |
| 215 | 1215178 | 1215420 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 216 | 3057602 | 3057880 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 217 | 7615 | 7917 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 218 | 2039475 | 2039774 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 219 | 477136 | 477435 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 220 | 2080026 | 2080325 | + | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 221 | 335167 | 335406 | - | NZ_CP018804.1 | Histophilus somni |
| 222 | 12058 | 12321 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 223 | 4226241 | 4226519 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 224 | 1322045 | 1322311 | + | NZ_CP028926.1 | Pasteurella multocida |
| 225 | 794299 | 794601 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 226 | 549290 | 549592 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 227 | 850126 | 850404 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 228 | 1879605 | 1879826 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 229 | 1868401 | 1868700 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 230 | 3381193 | 3381456 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 231 | 1069209 | 1069430 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 232 | 1452730 | 1452993 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 233 | 1932888 | 1933151 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 234 | 677106 | 677369 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 235 | 3312681 | 3312944 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 236 | 1452358 | 1452621 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 237 | 211656 | 211919 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 238 | 3424730 | 3424993 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 239 | 3606659 | 3606922 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 240 | 251785 | 252048 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 241 | 1088140 | 1088406 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 242 | 1246501 | 1246764 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 243 | 1502981 | 1503244 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 244 | 4014948 | 4015211 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 245 | 1049595 | 1049816 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 246 | 849341 | 849643 | - | NZ_LR134167.1 | Avibacterium volantium |
| 247 | 55088 | 55387 | + | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 248 | 1318266 | 1318529 | - | NZ_CP025799.1 | Dickeya zeae |
| 249 | 3381161 | 3381424 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 250 | 2876175 | 2876438 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 251 | 4232849 | 4233112 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 252 | 3349777 | 3350040 | + | NZ_LR134201.1 | Cedecea lapagei |
| 253 | 1507100 | 1507372 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 254 | 874023 | 874298 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 255 | 77001 | 77252 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 256 | 3613366 | 3613629 | + | NZ_CP023525.1 | Cedecea neteri |
| 257 | 3304434 | 3304697 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 258 | 2780524 | 2780787 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 259 | 1908035 | 1908298 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 260 | 1311506 | 1311769 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 261 | 1267139 | 1267402 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 262 | 2590773 | 2591072 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 263 | 2873803 | 2874066 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 264 | 1601400 | 1601663 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 265 | 3822146 | 3822409 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 266 | 1386125 | 1386388 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 267 | 126618 | 126857 | + | NZ_CP016604.1 | Otariodibacter oris |
| 268 | 3056006 | 3056269 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 269 | 4293612 | 4293875 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 270 | 3207017 | 3207280 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 271 | 2323324 | 2323587 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 272 | 2156804 | 2157067 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 273 | 3312674 | 3312937 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 274 | 1676910 | 1677173 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 275 | 1383353 | 1383616 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 276 | 1433355 | 1433654 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 277 | 1823776 | 1824075 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 278 | 1514446 | 1514709 | + | NZ_CP014322.1 | Alteromonas addita |
| 279 | 2144903 | 2145166 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 280 | 2015618 | 2015881 | - | NZ_CP008849.1 | Alteromonas australica |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010554.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00905.24 | 0.95 | 264 | 3701 | same-strand | Penicillin binding protein transpeptidase domain |
| 2 | PF03717.17 | 0.95 | 264 | 3701 | same-strand | Penicillin-binding Protein dimerisation domain |
| 3 | PF01098.21 | 0.96 | 267 | 2586.0 | same-strand | Cell cycle protein |
| 4 | PF03330.20 | 0.96 | 267 | 1461 | same-strand | Lytic transglycolase |
| 5 | PF05036.15 | 0.87 | 244 | 1463 | same-strand | SPOR domain |
| 6 | PF00768.22 | 0.97 | 271 | 122.0 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 7 | PF07943.15 | 0.97 | 271 | 122.0 | same-strand | Penicillin-binding protein 5, C-terminal domain |
| 8 | PF03099.21 | 0.7 | 194 | 97 | same-strand | Biotin/lipoate A/B protein ligase family |
| 9 | PF04055.23 | 0.99 | 277 | 884 | same-strand | Radical SAM superfamily |
| 10 | PF02590.19 | 0.81 | 225 | 5617.0 | same-strand | Predicted SPOUT methyltransferase |
++ More..