ProsmORF-pred
Result : Q5FUP5
Protein Information
Information Type Description
Protein name 50S ribosomal protein L28
NCBI Accession ID CP000009.1
Organism Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans)
Left 126312
Right 126614
Strand -
Nucleotide Sequence ATGTCTCGCCGTTGCCAGATCACGGGCAAGGGCGTGCTGACGGGCAACAACGTCAGCCACGCCAATAACAAGTCCCGCCGTCGTTTTCTCCCGAACCTGCAGGAGACCACGCTGATCTCCGATATTCTCGGTGCTTCGGTGCGCATGCGCCTGTCCACCGACGGTATCCGCACGGTCGAGCACAACGGTGGACTGGATTCGTTCCTGCTGGGTACGCCGAACCGCAAGCTTCCGACGGAAGCCCAGGTCATCAAGCGCCGTATCCTGCGCGTTCAGGAACGCAAGGCTGCCCAGACCGCCTGA
Sequence MSRRCQITGKGVLTGNNVSHANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVEHNGGLDSFLLGTPNRKLPTEAQVIKRRILRVQERKAAQTA
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID 15665824
Domain CDD:412338
Functional Category Ribosomal_protein
Uniprot ID Q5FUP5
ORF Length (Amino Acid) 100
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 266
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 126583 126885 - NZ_CP068419.1 Gluconobacter sphaericus
2 126298 126600 - NZ_CP004373.1 Gluconobacter oxydans DSM 3504
3 1688070 1688372 - NZ_CP014689.1 Gluconobacter albidus
4 3367510 3367812 - NZ_CP043043.1 Gluconobacter thailandicus
5 125462 125764 - NZ_CP032485.1 Neokomagataea tanensis
6 121050 121352 - NZ_CP038141.1 Swingsia samuiensis
7 1186250 1186552 + NZ_AP014690.1 Asaia bogorensis NBRC 16594
8 978120 978422 + NZ_CP014681.1 Kozakia baliensis
9 1050235 1050534 - NC_016027.1 Komagataeibacter medellinensis NBRC 3288
10 1205495 1205794 - NZ_CP036404.1 Komagataeibacter saccharivorans
11 864755 865054 - NZ_CP019875.1 Komagataeibacter nataicola
12 2287964 2288263 - NZ_CP050139.1 Komagataeibacter rhaeticus
13 1364540 1364842 + NZ_CP062147.1 Komagataeibacter hansenii
14 2439638 2439943 - NZ_CP053708.1 Lichenicola cladoniae
15 1704228 1704533 - NZ_CP042808.1 Acetobacter oryzoeni
16 1855795 1856097 + NZ_CP060244.1 Entomobacter blattae
17 3020639 3020944 + NZ_LN606600.1 Acetobacter senegalensis
18 1927198 1927503 - NZ_CP022374.1 Acetobacter oryzifermentans
19 602420 602725 - NC_021991.1 Acetobacter pasteurianus 386B
20 1355492 1355797 - NZ_CP015164.1 Acetobacter ascendens
21 2362262 2362558 - NZ_CP044117.1 Roseomonas mucosa
22 695460 695762 + NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4
23 3736863 3737165 + NZ_CP029176.1 Acidibrevibacterium fodinaquatile
24 2798922 2799224 + NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
25 360374 360679 + NC_007626.1 Magnetospirillum magneticum AMB-1
26 4424141 4424452 - NZ_AP019700.1 Stella humosa
27 4289319 4289618 + NZ_CP030265.1 Skermanella pratensis
28 2063958 2064254 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
29 167755 168051 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
30 339882 340166 - NZ_CP014525.1 Haematospirillum jordaniae
31 447496 447795 + NZ_CP029353.1 Azospirillum thermophilum
32 262704 263003 - NC_017584.1 Rhodospirillum rubrum F11
33 2657367 2657666 + NZ_CP054619.1 Azospirillum oryzae
34 1958292 1958579 - NC_017059.1 Pararhodospirillum photometricum DSM 122
35 3305623 3305925 + NC_015186.1 Acidiphilium multivorum AIU301
36 4764879 4765178 - NZ_CP042582.1 Hypericibacter adhaerens
37 1818021 1818314 - NZ_CP053923.1 Defluviicoccus vanus
38 154405 154704 - NZ_CP029829.1 Azospirillum ramasamyi
39 2245902 2246219 - NC_012846.1 Bartonella grahamii as4aup
40 574491 574784 + NZ_CP024199.1 Thalassospira marina
41 2482443 2482760 - NC_010161.1 Bartonella tribocorum CIP 105476
42 1779616 1779933 - NZ_LR134527.1 Bartonella elizabethae
43 3399902 3400207 + NZ_CP030126.1 Indioceanicola profundi
44 4929089 4929388 - NZ_CP042906.1 Hypericibacter terrae
45 1912119 1912436 - NZ_CP031844.2 Bartonella krasnovii
46 859438 859728 + NZ_CP004393.1 Celeribacter indicus
47 55916 56203 - NZ_CP035510.1 Haematobacter massiliensis
48 723413 723703 + NZ_CP012661.1 Defluviimonas alba
49 1876062 1876349 - NZ_CP042261.1 Qingshengfaniella alkalisoli
50 4713490 4713786 + NZ_LT960614.1 Hartmannibacter diazotrophicus
51 196397 196714 - NZ_CP031843.2 Bartonella kosoyi
52 1918808 1919101 - NZ_CP041636.1 Ferrovibrio terrae
53 4124923 4125216 - NZ_CP031555.1 Thalassospira indica
54 1500586 1500879 - NZ_AP019773.1 Bartonella quintana
55 1442438 1442731 - NC_014932.1 Bartonella clarridgeiae 73
56 3172576 3172863 + NZ_CP034328.1 Tabrizicola piscis
57 149722 150027 - NZ_LR134529.1 Bartonella vinsonii
58 410328 410621 - NZ_CP010401.1 Bartonella ancashensis
59 2951224 2951514 - NZ_CP061498.1 Roseicitreum antarcticum
60 3980491 3980790 + NZ_CP032694.1 Rhizobium jaguaris
61 3667556 3667855 + NZ_HG938353.1 Neorhizobium galegae bv. orientalis str. HAMBI 540
62 336395 336685 + NC_015259.1 Polymorphum gilvum SL003B-26A1
63 4762110 4762406 + NZ_CP018171.1 Mesorhizobium oceanicum
64 1085541 1085828 - NZ_CP016033.1 Erythrobacter neustonensis
65 860267 860554 - NZ_CP058235.1 Bartonella alsatica
66 1326190 1326489 - NZ_CP012401.1 Azospirillum thiophilum
67 3790546 3790836 + NZ_CP006877.1 Rhizobium gallicum bv. gallicum R602sp
68 1846023 1846313 + NC_009719.1 Parvibaculum lavamentivorans DS-1
69 1043747 1044037 + NZ_CP021047.1 Phaeobacter gallaeciensis
70 742446 742739 + NZ_LT605585.1 Brucella inopinata
71 4327172 4327474 + NZ_CP032509.1 Georhizobium profundi
72 1224603 1224896 - NZ_CP020538.1 Sphingobium herbicidovorans
73 4569859 4570149 + NC_011894.1 Methylobacterium nodulans ORS 2060
74 3342346 3342645 + NZ_LR723670.1 Pseudorhizobium flavum
75 297457 297744 - NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
76 3356328 3356627 + NZ_FO082820.1 Pseudorhizobium banfieldiae
77 3326350 3326649 + NC_020059.1 Rhizobium tropici CIAT 899
78 2909399 2909689 + NZ_CP015880.1 Ensifer adhaerens
79 1459784 1460074 + NZ_CP071454.1 Rhizobium lentis
80 1172253 1172543 + NZ_CP049241.1 Rhizobium pseudoryzae
81 1524543 1524833 - NZ_CP029553.1 Methylobacterium terrae
82 1372395 1372685 - NZ_CP060780.1 Sphingomonas daechungensis
83 478259 478552 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
84 688254 688544 + NZ_CP053857.1 Rhizobium pusense
85 692661 692951 + NZ_CP048635.1 Rhizobium oryzihabitans
86 746515 746805 + NZ_CP061004.1 Agrobacterium tumefaciens
87 2538301 2538600 + NZ_CP064063.1 Brucella anthropi
88 1939108 1939401 - NC_010103.1 Brucella canis ATCC 23365
89 1940936 1941229 - NC_004310.3 Brucella suis 1330
90 1949931 1950224 - NC_013119.1 Brucella microti CCM 4915
91 52604 52897 + NC_003317.1 Brucella melitensis bv. 1 str. 16M
92 52846 53139 + NC_022905.1 Brucella ceti TE10759-12
93 1954780 1955073 - NC_007618.1 Brucella abortus 2308
94 1783219 1783512 - NZ_CP019937.1 Ketogulonicigenium robustum
95 2810410 2810706 + NZ_CP042306.1 Sphingomonas panacisoli
96 168110 168400 - NZ_CP059896.1 Ciceribacter thiooxidans
97 2379176 2379469 + NZ_CP022604.1 [Ochrobactrum] quorumnocens
98 3956124 3956420 + NZ_CP020906.1 Rhizobium etli
99 3780782 3781081 + NZ_CP034998.1 Rhizobium acidisoli
100 4105290 4105589 + NZ_CP013532.1 Rhizobium phaseoli
101 1461355 1461645 + NZ_CP053015.1 Sphingomonas lacunae
102 509459 509746 + NZ_CP034588.1 Silicimonas algicola
103 2749939 2750226 + NC_009952.1 Dinoroseobacter shibae DFL 12 = DSM 16493
104 4596911 4597207 + NZ_CP071678.1 Rhizobium ruizarguesonis
105 3131128 3131424 - NZ_CP054021.1 Rhizobium indicum
106 161435 161731 + NZ_CP015318.1 Mesorhizobium amorphae CCNWGS0123
107 1402853 1403143 - NZ_CP049250.1 Rhizobium rhizoryzae
108 1518703 1518996 - NC_020300.1 Bartonella australis Aust/NH1
109 383631 383930 - NZ_CP054027.1 Rhizobium hidalgonense
110 4145723 4146013 + NZ_CP071604.1 Rhizobium binae
111 4944095 4944388 - NZ_CP009122.1 Sphingopyxis fribergensis
112 2221556 2221846 + NZ_CP060782.1 Sphingomonas sediminicola
113 4131868 4132164 + NZ_CP013500.1 Rhizobium esperanzae
114 1791557 1791844 - NZ_CP015421.1 Rhodovulum sulfidophilum
115 1902706 1902999 + NZ_CP022745.1 Sphingobium xenophagum
116 2520476 2520784 + NZ_CP035765.1 Sphingomonas paucimobilis
117 4022176 4022472 + NZ_CP071612.1 Rhizobium bangladeshense
118 1912614 1912901 - NZ_CP034179.1 Caenibius tardaugens NBRC 16725
119 402899 403189 + NZ_CP015963.1 Altererythrobacter ishigakiensis
120 4370865 4371161 - NZ_CP010803.1 Martelella endophytica
121 2584761 2585054 + NC_009511.1 Sphingomonas wittichii RW1
122 2638094 2638381 - NZ_CP032125.1 Profundibacter amoris
123 2392095 2392391 + NZ_CP020330.1 Martelella mediterranea DSM 17316
124 3524750 3525043 + NZ_AP017655.1 Sphingobium cloacae
125 2875013 2875303 + NC_020528.1 Sinorhizobium meliloti 2011
126 2899667 2899960 + NC_008048.1 Sphingopyxis alaskensis RB2256
127 1235600 1235887 - NZ_CP020470.1 Rhodobacter blasticus
128 4797973 4798269 - NZ_CP061038.1 Sphingomonas alpina
129 5493582 5493878 + NZ_CP015064.1 Mesorhizobium ciceri biovar biserrulae
130 1808764 1809057 - NZ_HG965802.1 Bartonella henselae
131 2452120 2452419 + NZ_CP046908.1 Stappia indica
132 87569 87865 + NC_008783.1 Bartonella bacilliformis KC583
133 2006149 2006448 + NZ_CP023705.1 Sphingomonas melonis
134 3338603 3338896 + NZ_CP060035.1 Sphingobium fuliginis
135 4839039 4839338 - NZ_CP010836.1 Sphingomonas hengshuiensis
136 1989850 1990152 + NZ_CP045434.1 Sphingomonas ginsengisoli An et al. 2013
137 35565 35852 + NZ_CP024899.1 Rhodobaca barguzinensis
138 2611201 2611491 + NZ_CP023067.1 Ensifer sojae CCBAU 05684
139 1947187 1947498 + NZ_CP072611.1 Aureimonas populi
140 3204532 3204822 - NZ_CP018221.1 Tardibacter chloracetimidivorans
141 2352479 2352769 - NZ_CP016364.1 Phaeobacter porticola
142 2402908 2403198 - NZ_CP010650.1 Phaeobacter inhibens
143 425228 425527 - NZ_CP017940.1 Phyllobacterium zundukense
144 474955 475239 + NZ_CP053086.1 Pelagibacterium halotolerans
145 1481574 1481864 + NZ_CP024920.1 Qipengyuania seohaensis
146 1945512 1945805 - NC_009505.1 Brucella ovis ATCC 25840
147 3054628 3054933 - NZ_CP009571.1 Sphingomonas taxi
148 3671724 3672029 + NZ_CP054836.1 Oricola thermophila
149 1256075 1256371 + NZ_CP014168.1 Sphingomonas panacis
150 2615803 2616093 + NZ_CP034909.1 Ensifer alkalisoli
151 2972653 2972943 + NZ_CP029451.1 Sinorhizobium fredii CCBAU 25509
152 2825288 2825572 + NZ_CP042304.1 Devosia ginsengisoli
153 2131866 2132156 - NZ_CP041159.1 Leisingera aquaemixtae
154 3910349 3910633 - NZ_CP041690.1 Youhaiella tibetensis
155 3041078 3041368 + NZ_CP013107.1 Sinorhizobium americanum
156 487796 488101 - NZ_CP016545.1 Paraurantiacibacter namhicola
157 1600032 1600328 - NZ_CP033361.1 Mesorhizobium erdmanii
158 3347085 3347381 - NZ_AP014648.1 Methyloceanibacter caenitepidi
159 1755766 1756056 - NZ_CP004372.1 Roseibacterium elongatum DSM 19469
160 130119 130406 - NZ_CP030918.1 Paracoccus suum
161 2231363 2231659 - NZ_CP012908.1 Ketogulonicigenium vulgare
162 3570284 3570574 + NZ_CP041238.1 Ensifer mexicanus
163 3593642 3593932 + NZ_CP060436.1 Pseudooceanicola algae
164 1027915 1028202 + NC_003911.12 Ruegeria pomeroyi DSS-3
165 2311826 2312110 + NZ_CP068983.1 Paradevosia shaoguanensis
166 2498003 2498293 + NZ_CP044331.1 Methylocystis parvus
167 3539477 3539767 - NC_020908.1 Octadecabacter arcticus 238
168 549491 549784 + NZ_CP040517.1 Luteithermobacter gelatinilyticus
169 213208 213495 + NZ_CP003984.1 Planktomarina temperata RCA23
170 570634 570924 + NZ_CP021330.1 Maritalea myrionectae
171 443548 443838 - NZ_CP031357.1 Erythrobacter aureus
172 2983588 2983881 - NZ_CP054599.1 Sulfitobacter pseudonitzschiae
173 1773457 1773744 - NZ_CP051181.1 Thalassobius gelatinovorus
174 5130183 5130476 - NZ_CP009429.1 Sphingopyxis macrogoltabida
175 381726 382016 + NZ_CP011310.1 Aurantiacibacter atlanticus
176 3729014 3729301 + NZ_CP022196.1 Celeribacter ethanolicus
177 2421776 2422063 - NZ_CP011805.1 Pelagerythrobacter marensis
178 78500 78796 + NZ_CP060718.1 Sphingomonas lutea
179 1065935 1066222 + NZ_CP025086.1 Methylovirgula ligni
180 554270 554548 - NZ_CP060052.1 Croceicoccus marinus
181 2132017 2132292 + NZ_CP030239.1 Paracoccus mutanolyticus
182 1748615 1748920 + NZ_CP020612.1 Paracoccus contaminans
183 2099761 2100051 - NZ_CP015230.1 Epibacterium mobile F1926
184 2347536 2347823 + NZ_CP011452.2 Croceibacterium atlanticum
185 2767725 2768000 - NC_022041.1 Paracoccus aminophilus JCM 7686
186 1630252 1630548 - NC_019973.1 Mesorhizobium australicum WSM2073
187 415310 415600 - NZ_AP019389.1 Qipengyuania flava
188 1155312 1155596 + NZ_CP042345.1 Novosphingobium ginsenosidimutans
189 69419 69709 + NZ_CP071057.1 Marinicauda algicola
190 2920710 2921003 - NC_014006.1 Sphingobium japonicum UT26S
191 588410 588700 - NZ_CP021404.1 Pacificitalea manganoxidans
192 1651990 1652265 + NZ_CP024422.1 Paracoccus yeei
193 4630506 4630799 - NZ_CP023449.1 Rhizorhabdus dicambivorans
194 2457272 2457559 + NZ_CP012669.1 Altererythrobacter epoxidivorans
195 1624188 1624484 - NC_015675.1 Mesorhizobium opportunistum WSM2075
196 363602 363892 - NC_011666.1 Methylocella silvestris BL2
197 2271040 2271327 - NZ_CP012160.1 Octadecabacter temperatus
198 374650 374925 + NZ_CP045072.1 Paracoccus kondratievae
199 2985464 2985757 + NZ_CP019044.1 Salaquimonas pukyongi
200 2019289 2019573 + NZ_CP051131.1 Parasphingopyxis algicola
201 1584819 1585115 - NZ_CP033507.1 Mesorhizobium jarvisii
202 2096946 2097242 + NZ_CP050296.1 Mesorhizobium huakuii
203 2864296 2864592 + NC_002678.2 Mesorhizobium japonicum MAFF 303099
204 118375 118671 - NZ_CP036532.1 Roseitalea porphyridii
205 326592 326885 + NZ_CP061205.1 Kordiimonas pumila
206 3670164 3670454 - NC_020911.1 Octadecabacter antarcticus 307
207 2736309 2736596 - NZ_CP040818.1 Paraoceanicella profunda
208 3356546 3356839 - NZ_CP041025.1 Paremcibacter congregatus
209 231568 231852 - NC_007794.1 Novosphingobium aromaticivorans DSM 12444
210 1029976 1030266 + NC_023135.1 Leisingera methylohalidivorans DSM 14336
211 1005316 1005606 + NZ_CP010855.1 Marinovum algicola DG 898
212 187711 188001 - NZ_AP014946.1 Variibacter gotjawalensis
213 3279287 3279583 - NZ_CP046052.1 Methylocystis heyeri
214 566781 567071 - NZ_CP045423.1 Microvirga thermotolerans
215 3911010 3911318 + NC_014217.1 Starkeya novella DSM 506
216 2886758 2887039 - NZ_CP020083.1 Blastomonas fulva
217 554849 555136 - NZ_CP016591.1 Tsuneonella dongtanensis
218 2445201 2445485 + NZ_CP009291.1 Novosphingobium pentaromativorans US6-1
219 743050 743328 + NZ_LN832559.1 Paracoccus aminovorans
220 1951551 1951847 + NZ_CP037948.1 Qipengyuania sediminis
221 3199539 3199826 + NZ_CP017057.1 Erythrobacter litoralis
222 3162257 3162556 - NZ_CP048788.1 Roseobacter ponti
223 3109242 3109535 + NZ_CP048630.1 Ancylobacter pratisalsi
224 2046133 2046432 - NZ_CP019948.1 Methylocystis bryophila
225 1401051 1401344 - NZ_CP041659.1 Sphingomonas xanthus
226 1058393 1058680 - NZ_CP012023.1 Celeribacter marinus
227 1044906 1045193 + NZ_CP053921.1 Erythrobacter mangrovi
228 3773699 3773998 + NZ_CP027407.1 Roseobacter denitrificans
229 5421505 5421792 - NZ_CP006644.1 Sphingomonas sanxanigenens DSM 19645 = NX02
230 1782353 1782637 + NZ_CP022889.1 Tsuneonella mangrovi
231 3809743 3810039 + NZ_CP025430.1 Paracoccus zhejiangensis
232 3090256 3090555 - NC_015730.1 Roseobacter litoralis Och 149
233 4195760 4196050 - NZ_CP015093.1 Salipiger abyssi
234 3046610 3046900 - NZ_CP016616.1 Microvirga ossetica
235 535259 535555 + NZ_CP038439.1 Paracoccus liaowanqingii
236 31300 31590 - NZ_CP012946.1 Blastochloris viridis
237 606080 606379 + NC_009937.1 Azorhizobium caulinodans ORS 571
238 752640 752948 - NC_014664.1 Rhodomicrobium vannielii ATCC 17100
239 464181 464474 - NC_015684.1 Afipia carboxidovorans OM5
240 653041 653346 - NZ_CP030051.1 Bradyrhizobium guangdongense
241 2065443 2065736 + NZ_CP060717.1 Sphingomonas rhizophila
242 9338116 9338424 + NZ_CP022221.1 Bradyrhizobium zhanjiangense
243 718029 718337 - NZ_CP058354.1 Bradyrhizobium japonicum
244 508209 508496 + NZ_CP017147.1 Bosea vaviloviae
245 89045 89353 + NZ_CP032617.1 Bradyrhizobium diazoefficiens
246 3888276 3888572 + NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039
247 2388461 2388766 + NZ_CP039690.1 Phreatobacter stygius
248 534935 535240 + NZ_CP058907.1 Rhodopseudomonas palustris
249 829041 829346 - NZ_CP030053.1 Bradyrhizobium guangzhouense
250 128624 128926 + NZ_CP025583.1 Paracoccus jeotgali
251 315649 315960 - NZ_CP029426.1 Bradyrhizobium amphicarpaeae
252 7951219 7951527 + NC_020453.1 Bradyrhizobium oligotrophicum S58
253 3677828 3678139 - NZ_CP044543.1 Bradyrhizobium betae
254 99478 99786 - NZ_CP022219.1 Bradyrhizobium guangxiense
255 665421 665732 - NC_017082.1 Bradyrhizobium cosmicum
256 1976066 1976377 + NZ_CP050066.1 Bradyrhizobium symbiodeficiens
257 2165591 2165881 - NZ_CP021112.1 Pseudorhodoplanes sinuspersici
258 597705 598013 - NZ_LS398110.1 Bradyrhizobium vignae
259 4360956 4361258 + NZ_CP043538.1 Methylobacterium mesophilicum SR1.6/6
260 3398159 3398461 - NZ_CP015367.1 Methylobacterium phyllosphaerae
261 4244317 4244619 - NZ_CP003811.1 Methylobacterium oryzae CBMB20
262 534323 534628 + NZ_CP013002.1 Caulobacter henricii
263 4055741 4056040 - NZ_CP027850.1 Caulobacter segnis
264 758081 758380 + NC_011916.1 Caulobacter vibrioides NA1000
265 40511 40810 - NZ_CP026100.1 Caulobacter flavus
266 3084280 3084585 + NZ_CP039546.1 Methylorubrum populi
++ More..