* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009610.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01136.21
|
0.67
|
2
|
4069.0
|
same-strand
|
Peptidase family U32
|
2
|
PF16325.7
|
0.67
|
2
|
4069.0
|
same-strand
|
Peptidase family U32 C-terminal domain
|
3
|
PF07690.18
|
0.67
|
2
|
2596.0
|
same-strand
|
Major Facilitator Superfamily
|
4
|
PF02581.19
|
0.67
|
2
|
1932.0
|
same-strand
|
Thiamine monophosphate synthase
|
5
|
PF08543.14
|
0.67
|
2
|
1112.0
|
same-strand
|
Phosphomethylpyrimidine kinase
|
6
|
PF02110.17
|
0.67
|
2
|
328.0
|
same-strand
|
Hydroxyethylthiazole kinase family
|
7
|
PF10150.11
|
0.67
|
2
|
496.5
|
same-strand
|
Ribonuclease E/G family
|
8
|
PF12111.10
|
0.67
|
2
|
496.5
|
same-strand
|
Polyribonucleotide phosphorylase C terminal
|
9
|
PF00575.25
|
0.67
|
2
|
496.5
|
same-strand
|
S1 RNA binding domain
|
10
|
PF00849.24
|
0.67
|
2
|
3725.5
|
opposite-strand
|
RNA pseudouridylate synthase
|
11
|
PF01479.27
|
0.67
|
2
|
3725.5
|
opposite-strand
|
S4 domain
|
12
|
PF17209.5
|
0.67
|
2
|
4784.5
|
opposite-strand
|
Hfq protein
|
13
|
PF00158.28
|
0.67
|
2
|
5156.0
|
same-strand
|
Sigma-54 interaction domain
|
14
|
PF18024.3
|
0.67
|
2
|
5156.0
|
same-strand
|
Helix-turn-helix domain
|
15
|
PF14532.8
|
0.67
|
2
|
5156.0
|
same-strand
|
Sigma-54 interaction domain
|
16
|
PF19425.1
|
0.67
|
2
|
6227.0
|
same-strand
|
Csd3 second domain
|
17
|
PF01551.24
|
0.67
|
2
|
6227.0
|
same-strand
|
Peptidase family M23
|
18
|
PF04225.14
|
0.67
|
2
|
6227.0
|
same-strand
|
Opacity-associated protein A LysM-like domain
|
++ More..