Result : Q53204
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ferredoxin-like protein in nif region |
| NCBI Accession ID | Z68203.1 |
| Organism | Sinorhizobium fredii (strain NBRC 101917 / NGR234) |
| Left | 17349 |
| Right | 17543 |
| Strand | - |
| Nucleotide Sequence | ATGGCCTTCAAAATCATCGCATCCCAGTGCACCCAGTGCGGCGCCTGCGAGTTCGAATGCCCTTCCAACGCTATCGAGTTAAAGGGCGAAAAGTACGTGATAGATCCGAAGAAATGCACCGAATGCAAGGGCGTTTTCGAGATACAGCAATGCGCCTCTGTATGTCCCATGCCGAAGACCTGCGTGCCGGCTTAA |
| Sequence | MAFKIIASQCTQCGACEFECPSNAIELKGEKYVIDPKKCTECKGVFEIQQCASVCPMPKTCVPA |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 8796346 9163424 19376903 |
| Domain | |
| Functional Category | Metal-binding |
| Uniprot ID | Q53204 |
| ORF Length (Amino Acid) | 64 |
++ More..
| Conservation Analysis |
No. of Species: 100
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 441704 | 441898 | + | NZ_CP034911.1 | Ensifer alkalisoli |
| 2 | 254372 | 254566 | - | NC_020061.1 | Rhizobium tropici CIAT 899 |
| 3 | 221924 | 222118 | - | NZ_CP029453.1 | Sinorhizobium fredii CCBAU 25509 |
| 4 | 235314 | 235508 | - | NZ_CP023069.1 | Ensifer sojae CCBAU 05684 |
| 5 | 353555 | 353749 | + | NZ_CP041240.1 | Ensifer mexicanus |
| 6 | 98974 | 99168 | - | NZ_CP071610.1 | Rhizobium binae |
| 7 | 6361848 | 6362042 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 8 | 6725711 | 6725905 | + | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 9 | 5972486 | 5972680 | + | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 10 | 6598197 | 6598391 | + | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 11 | 4728414 | 4728608 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 12 | 190064 | 190258 | - | NZ_CP054030.1 | Rhizobium hidalgonense |
| 13 | 216909 | 217103 | + | NZ_CP054024.1 | Rhizobium indicum |
| 14 | 213723 | 213917 | - | NZ_CP032696.1 | Rhizobium jaguaris |
| 15 | 91479 | 91679 | - | NZ_CP013109.1 | Sinorhizobium americanum |
| 16 | 220455 | 220661 | - | NZ_CP006879.1 | Rhizobium gallicum bv. gallicum R602sp |
| 17 | 163046 | 163240 | - | NZ_CP071458.1 | Rhizobium lentis |
| 18 | 156023 | 156217 | + | NZ_CP071615.1 | Rhizobium bangladeshense |
| 19 | 309989 | 310183 | - | NZ_CP071682.1 | Rhizobium ruizarguesonis |
| 20 | 312826 | 313032 | + | NZ_CP013502.1 | Rhizobium esperanzae |
| 21 | 308979 | 309185 | + | NZ_CP013535.1 | Rhizobium phaseoli |
| 22 | 1022098 | 1022292 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 23 | 545118 | 545312 | + | NZ_CP015322.1 | Mesorhizobium amorphae CCNWGS0123 |
| 24 | 195955 | 196149 | + | NZ_CP071608.1 | Rhizobium binae |
| 25 | 286081 | 286287 | + | NZ_CP020910.1 | Rhizobium etli |
| 26 | 584276 | 584482 | + | NZ_CP034999.1 | Rhizobium acidisoli |
| 27 | 443641 | 443835 | - | NC_020527.1 | Sinorhizobium meliloti 2011 |
| 28 | 73033 | 73227 | + | NZ_CP050299.1 | Mesorhizobium huakuii |
| 29 | 4769280 | 4769480 | + | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 30 | 4724654 | 4724848 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 31 | 4701379 | 4701603 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 32 | 4082768 | 4082974 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 33 | 177942 | 178136 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 34 | 200164 | 200388 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 35 | 1171782 | 1171979 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 36 | 3942782 | 3943006 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 37 | 3266692 | 3266886 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 38 | 3262725 | 3262946 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 39 | 5593967 | 5594161 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 40 | 5571583 | 5571807 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 41 | 1181225 | 1181419 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 42 | 2588203 | 2588397 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 43 | 2612529 | 2612753 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 44 | 455322 | 455516 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 45 | 458559 | 458771 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 46 | 7150226 | 7150420 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 47 | 7112829 | 7113038 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 48 | 2119389 | 2119583 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 49 | 1694149 | 1694343 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 50 | 3141182 | 3141376 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 51 | 1099742 | 1099933 | + | NZ_HG938354.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 52 | 1722100 | 1722294 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 53 | 1415329 | 1415517 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 54 | 1719695 | 1719919 | - | NZ_CP019948.1 | Methylocystis bryophila |
| 55 | 1862200 | 1862394 | + | NC_006526.2 | Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 |
| 56 | 5751298 | 5751492 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 57 | 5702479 | 5702691 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 58 | 1047649 | 1047843 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 59 | 1026208 | 1026432 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 60 | 1838588 | 1838782 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 61 | 1857346 | 1857570 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 62 | 1727378 | 1727572 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 63 | 1746136 | 1746360 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 64 | 1269834 | 1270025 | + | NZ_AP018907.1 | Blastochloris tepida |
| 65 | 1268001 | 1268195 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 66 | 5438760 | 5438954 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 67 | 5373467 | 5373691 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 68 | 5074281 | 5074475 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 69 | 5072321 | 5072542 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 70 | 2531157 | 2531348 | - | NZ_CP012946.1 | Blastochloris viridis |
| 71 | 1175469 | 1175693 | + | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 72 | 1821583 | 1821771 | - | NZ_CP044331.1 | Methylocystis parvus |
| 73 | 3988589 | 3988813 | + | NZ_CP044331.1 | Methylocystis parvus |
| 74 | 4004109 | 4004336 | - | NC_011666.1 | Methylocella silvestris BL2 |
| 75 | 94788 | 94976 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 76 | 3747543 | 3747758 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 77 | 1821489 | 1821680 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 78 | 3256260 | 3256478 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 79 | 2783793 | 2784011 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 80 | 1667104 | 1667295 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 81 | 1143946 | 1144137 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 82 | 924930 | 925121 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 83 | 372080 | 372304 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 84 | 1492933 | 1493127 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 85 | 3718440 | 3718631 | - | NZ_CP030265.1 | Skermanella pratensis |
| 86 | 1705866 | 1706090 | + | NZ_CP025086.1 | Methylovirgula ligni |
| 87 | 450590 | 450814 | + | NZ_CP037899.1 | Methylacidiphilum kamchatkense Kam1 |
| 88 | 1652723 | 1652941 | + | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 89 | 1327506 | 1327724 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 90 | 1730111 | 1730305 | + | NZ_CP022423.1 | Vitreoscilla filiformis |
| 91 | 1663266 | 1663460 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 92 | 12530 | 12724 | - | NZ_CP022991.1 | Paraburkholderia aromaticivorans |
| 93 | 1774643 | 1774837 | - | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 94 | 450821 | 451045 | + | NC_010794.1 | Methylacidiphilum infernorum V4 |
| 95 | 2275893 | 2276111 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 96 | 4051780 | 4051974 | - | NZ_CP053923.1 | Defluviicoccus vanus |
| 97 | 1711522 | 1711710 | - | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 98 | 2637426 | 2637620 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 99 | 1184452 | 1184637 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 100 | 3145804 | 3145992 | - | NC_017584.1 | Rhodospirillum rubrum F11 |
| 101 | 512788 | 512982 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 102 | 547029 | 547223 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 103 | 5834561 | 5834785 | + | NZ_AP017928.1 | Methylocaldum marinum |
| 104 | 414919 | 415107 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 105 | 211303 | 211527 | + | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 106 | 389699 | 389887 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 107 | 875678 | 875878 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 108 | 1658666 | 1658869 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 109 | 545132 | 545323 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 110 | 3404572 | 3404763 | + | NZ_CP010803.1 | Martelella endophytica |
| 111 | 1961638 | 1961826 | + | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 112 | 1649300 | 1649488 | + | NC_002932.3 | Chlorobaculum tepidum TLS |
| 113 | 1307567 | 1307752 | - | NC_011891.1 | Anaeromyxobacter dehalogenans 2CP-1 |
| 114 | 654527 | 654736 | + | NZ_CP022132.1 | Francisella halioticida |
| 115 | 116017 | 116205 | + | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 116 | 2081012 | 2081182 | - | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 117 | 1150128 | 1150298 | - | NZ_CP014176.1 | Clostridium argentinense |
| 118 | 2784685 | 2784867 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 119 | 2493066 | 2493236 | + | NZ_AP023049.1 | Alistipes indistinctus |
| 120 | 1903678 | 1903845 | - | NZ_LR027382.1 | Alistipes megaguti |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034911.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00158.28 | 0.6 | 60 | 1748 | same-strand | Sigma-54 interaction domain |
| 2 | PF14532.8 | 0.6 | 60 | 1748 | same-strand | Sigma-54 interaction domain |
| 3 | PF07728.16 | 0.6 | 60 | 1748 | same-strand | AAA domain (dynein-related subfamily) |
| 4 | PF04055.23 | 0.86 | 86 | 35 | same-strand | Radical SAM superfamily |
| 5 | PF02579.19 | 0.86 | 86 | 35 | same-strand | Dinitrogenase iron-molybdenum cofactor |
| 6 | PF04319.15 | 0.73 | 73 | 1659 | same-strand | NifZ domain |
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