* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002516.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13442.8
|
1.0
|
4
|
1620
|
opposite-strand
|
Cytochrome C oxidase, cbb3-type, subunit III
|
2
|
PF00034.23
|
1.0
|
4
|
654
|
same-strand
|
Cytochrome c
|
3
|
PF02239.18
|
0.75
|
3
|
1620
|
opposite-strand
|
Cytochrome D1 heme domain
|
4
|
PF07728.16
|
1.0
|
4
|
617.5
|
same-strand
|
AAA domain (dynein-related subfamily)
|
5
|
PF08406.12
|
1.0
|
4
|
617.5
|
same-strand
|
CbbQ/NirQ/NorQ C-terminal
|
6
|
PF07726.13
|
0.75
|
3
|
613
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
7
|
PF00115.22
|
1.0
|
4
|
675.0
|
same-strand
|
Cytochrome C and Quinol oxidase polypeptide I
|
8
|
PF00027.31
|
1.0
|
4
|
4337.0
|
opposite-strand
|
Cyclic nucleotide-binding domain
|
9
|
PF13545.8
|
1.0
|
4
|
4337.0
|
opposite-strand
|
Crp-like helix-turn-helix domain
|
++ More..