Protein Information |
Information Type | Description |
---|---|
Protein name | Endoribonuclease VapD homolog (EC 3.1.-.-) (Virulence-associated protein D homolog) |
NCBI Accession ID | M10316.1 |
Organism | Neisseria gonorrhoeae |
Left | 2355 |
Right | 2633 |
Strand | + |
Nucleotide Sequence | ATGTACGCGATTTCTTTTGATTTGGTGGTTGCCGATACCGCTCAAAACCATCCGAAAGGCATTTCCCAAGCCTACGCGGATATTGGATACACCCTGCGGAAATTCGGCTTTACCCGCATTCAGGGAAGTTTGTACACCTGCCAAAACGAAGATATGGCTAACCTGTTTTCAGCCATCAACGAGCTAAAAGCTCTGCCTTGGTTTCCGTCTTCTGTCCGCGATATTCGGGCGTTCCGCATTGAGCAGTGGTCTGATTTCACAAGTCTTGTGAAGTCTTAA |
Sequence | MYAISFDLVVADTAQNHPKGISQAYADIGYTLRKFGFTRIQGSLYTCQNEDMANLFSAINELKALPWFPSSVRDIRAFRIEQWSDFTSLVKS |
Source of smORF | Swiss-Prot |
Function | Cleaves ssRNA, mostly between U:A. {ECO:0000250}. |
Pubmed ID | 2991186 |
Domain | CDD:416272 |
Functional Category | Others |
Uniprot ID | Q51003 |
ORF Length (Amino Acid) | 92 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 10955 | 11233 | + | NZ_CP059568.1 | Kingella oralis |
2 | 1323857 | 1324141 | - | NZ_CP022278.1 | Neisseria chenwenguii |
3 | 2753622 | 2753900 | - | NZ_CP037952.1 | Parashewanella spongiae |
4 | 16122 | 16403 | - | NZ_AP021883.1 | Sulfuriferula nivalis |
5 | 39393 | 39674 | + | NZ_AP021882.1 | Sulfuriferula nivalis |
6 | 1695751 | 1696032 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
7 | 3149924 | 3150205 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
8 | 5528960 | 5529238 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
9 | 572241 | 572519 | + | NZ_CP009610.1 | Haemophilus influenzae |
10 | 6113611 | 6113895 | + | NZ_CP012938.1 | Bacteroides ovatus |
11 | 11952 | 12239 | + | NC_015165.1 | Phocaeicola salanitronis DSM 18170 |
12 | 932891 | 933193 | + | NZ_CP063145.1 | Cruoricaptor ignavus |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF17375.4 | 0.67 | 6 | 0.0 | same-strand | Family of unknown function (DUF5397) |