Result : Q4UMD5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | CP000053.1 |
| Organism | Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) |
| Left | 452748 |
| Right | 452948 |
| Strand | + |
| Nucleotide Sequence | GTGATACTAGTAAATGTTCACGCCGGTAATTGTGACAATACGCTTAAGAATTTTAAGAAAAGGCTACAAAGAGAGCTTTATTTTCGTAAGATGAAAGAACAGCGTTATTATGAAACACCTTCAGCGAAGCGTGTTCGTAAAGCACAAGAAGCAGCGAGAAGACAGAGAAAATTTGCTCGTAAAAAAATGTTTGATGAATAA |
| Sequence | MILVNVHAGNCDNTLKNFKKRLQRELYFRKMKEQRYYETPSAKRVRKAQEAARRQRKFARKKMFDE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 15984913 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | Q4UMD5 |
| ORF Length (Amino Acid) | 66 |
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| Conservation Analysis |
No. of Species: 82
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 381759 | 381959 | + | NC_016929.1 | Rickettsia canadensis str. CA410 |
| 2 | 892242 | 892442 | - | NC_010263.3 | Rickettsia rickettsii str. Iowa |
| 3 | 900213 | 900413 | - | NZ_AP019864.1 | Rickettsia heilongjiangensis |
| 4 | 554745 | 554945 | + | NC_017058.1 | Rickettsia australis str. Cutlack |
| 5 | 731177 | 731377 | + | NZ_LN794217.1 | Rickettsia monacensis |
| 6 | 869215 | 869415 | - | NC_009881.1 | Rickettsia akari str. Hartford |
| 7 | 889568 | 889768 | - | NC_003103.1 | Rickettsia conorii str. Malish 7 |
| 8 | 897207 | 897407 | - | NC_016639.1 | Rickettsia slovaca 13-B |
| 9 | 951914 | 952114 | - | NZ_AP019563.1 | Rickettsia asiatica |
| 10 | 775285 | 775485 | - | NC_017049.1 | Rickettsia prowazekii str. Chernikova |
| 11 | 785145 | 785345 | - | NC_017066.1 | Rickettsia typhi str. TH1527 |
| 12 | 513256 | 513456 | + | NC_007940.1 | Rickettsia bellii RML369-C |
| 13 | 228894 | 229100 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 14 | 339076 | 339282 | - | NZ_CP012908.1 | Ketogulonicigenium vulgare |
| 15 | 287024 | 287251 | - | NZ_CP071457.1 | Rhizobium lentis |
| 16 | 3557387 | 3557599 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 17 | 2845381 | 2845608 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 18 | 296344 | 296550 | - | NC_020908.1 | Octadecabacter arcticus 238 |
| 19 | 3479736 | 3479936 | - | NC_020908.1 | Octadecabacter arcticus 238 |
| 20 | 1243698 | 1243910 | + | NZ_CP071454.1 | Rhizobium lentis |
| 21 | 3517560 | 3517766 | + | NZ_CP065915.1 | Pelagovum pacificum |
| 22 | 3882360 | 3882572 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 23 | 1839939 | 1840142 | - | NZ_CP060244.1 | Entomobacter blattae |
| 24 | 585867 | 586094 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 25 | 2796577 | 2796783 | + | NZ_CP012160.1 | Octadecabacter temperatus |
| 26 | 394956 | 395162 | - | NC_020911.1 | Octadecabacter antarcticus 307 |
| 27 | 2492257 | 2492457 | - | NC_020911.1 | Octadecabacter antarcticus 307 |
| 28 | 2682584 | 2682811 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 29 | 3731831 | 3732043 | + | NZ_CP020906.1 | Rhizobium etli |
| 30 | 3920096 | 3920308 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 31 | 3806307 | 3806519 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 32 | 139851 | 140054 | + | NZ_CP068419.1 | Gluconobacter sphaericus |
| 33 | 139529 | 139732 | + | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 34 | 1701335 | 1701538 | + | NZ_CP014689.1 | Gluconobacter albidus |
| 35 | 3165957 | 3166169 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 36 | 3385496 | 3385711 | - | NZ_CP054021.1 | Rhizobium indicum |
| 37 | 1358288 | 1358512 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 38 | 652314 | 652520 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 39 | 243756 | 243962 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 40 | 3539683 | 3539895 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 41 | 211662 | 211868 | + | NZ_CP010522.1 | Liberibacter crescens |
| 42 | 3917954 | 3918166 | + | NZ_CP071604.1 | Rhizobium binae |
| 43 | 620619 | 620834 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 44 | 2940435 | 2940641 | - | NZ_CP061498.1 | Roseicitreum antarcticum |
| 45 | 473468 | 473674 | - | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 46 | 4351539 | 4351751 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 47 | 2795098 | 2795304 | - | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 48 | 2208011 | 2208217 | + | NZ_CP022196.1 | Celeribacter ethanolicus |
| 49 | 4361501 | 4361707 | + | NZ_CP004393.1 | Celeribacter indicus |
| 50 | 2755958 | 2756176 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 51 | 352484 | 352690 | - | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 52 | 3095719 | 3095931 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 53 | 3652002 | 3652214 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 54 | 3491572 | 3491778 | + | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 55 | 1154152 | 1154358 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 56 | 1854799 | 1855005 | - | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 57 | 2564992 | 2565198 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 58 | 460399 | 460605 | - | NZ_CP016364.1 | Phaeobacter porticola |
| 59 | 3056618 | 3056824 | + | NZ_CP010650.1 | Phaeobacter inhibens |
| 60 | 387286 | 387492 | - | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 61 | 3041718 | 3041924 | - | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 62 | 2550017 | 2550223 | + | NZ_CP060436.1 | Pseudooceanicola algae |
| 63 | 3229468 | 3229674 | - | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 64 | 3532746 | 3532952 | + | NZ_CP048788.1 | Roseobacter ponti |
| 65 | 602669 | 602875 | - | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 66 | 248574 | 248780 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 67 | 3158854 | 3159060 | - | NZ_CP027407.1 | Roseobacter denitrificans |
| 68 | 241164 | 241370 | - | NC_015730.1 | Roseobacter litoralis Och 149 |
| 69 | 2865107 | 2865313 | + | NZ_CP032125.1 | Profundibacter amoris |
| 70 | 1571099 | 1571302 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 71 | 501696 | 501902 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 72 | 3164599 | 3164805 | - | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 73 | 1147324 | 1147530 | + | NZ_CP015093.1 | Salipiger abyssi |
| 74 | 3812797 | 3813003 | + | NZ_CP034588.1 | Silicimonas algicola |
| 75 | 2601973 | 2602179 | + | NZ_CP041159.1 | Leisingera aquaemixtae |
| 76 | 3016208 | 3016414 | + | NZ_CP034348.1 | Roseovarius faecimaris |
| 77 | 3757758 | 3757964 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 78 | 1457929 | 1458135 | + | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 79 | 709123 | 709326 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 80 | 3039624 | 3039800 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 81 | 2308037 | 2308243 | + | NZ_CP022889.1 | Tsuneonella mangrovi |
| 82 | 187424 | 187633 | + | NZ_CP037948.1 | Qipengyuania sediminis |
| 83 | 2995647 | 2995853 | - | NZ_CP009429.1 | Sphingopyxis macrogoltabida |
| 84 | 1993109 | 1993312 | + | NZ_CP051131.1 | Parasphingopyxis algicola |
| 85 | 1086385 | 1086588 | - | NZ_CP044117.1 | Roseomonas mucosa |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_016929.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08511.13 | 0.61 | 50 | 112.5 | opposite-strand | COQ9 |
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