Result : Q4R102
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein ShdD (Phenolic acid decarboxylase subunit D) (PAD) |
| NCBI Accession ID | AF128880.2 |
| Organism | Sedimentibacter hydroxybenzoicus (Clostridium hydroxybenzoicum) |
| Left | 3759 |
| Right | 3965 |
| Strand | + |
| Nucleotide Sequence | ATGAAATGTCATAGATGTGGCTCGGATAATGTTAGAAAAATGGTAGATTCTCCTGTGGGAGATGCCTGGGAAGTTTATGTATGTGAAAAATGCTGTTATTCATGGCGTTCAACGGAGAATCCCGTTGTTATGGAGAAATTTAAATTAGATGATAATAAAATTGCAAATATGGGCGTAATACCGCCTATACCACCCTTGAAAAAATAG |
| Sequence | MKCHRCGSDNVRKMVDSPVGDAWEVYVCEKCCYSWRSTENPVVMEKFKLDDNKIANMGVIPPIPPLKK |
| Source of smORF | Swiss-Prot |
| Function | Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives under anaerobic conditions, however the precise biochemical function of ShdD in metabolism of phenolic acid is unknown. {ECO:0000269|Pubmed:15979273, ECO:0000269|Pubmed:24193968}. |
| Pubmed ID | 7744052 10438791 12054241 15979273 24193968 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | Q4R102 |
| ORF Length (Amino Acid) | 68 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1598682 | 1598888 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 2 | 1677222 | 1677428 | - | NC_014363.1 | Olsenella uli DSM 7084 |
| 3 | 2549785 | 2550012 | + | NZ_CP043998.1 | Clostridium diolis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP019004.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01977.18 | 1.0 | 3 | 869.0 | same-strand | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
| 2 | PF03466.22 | 1.0 | 3 | 4037 | same-strand | LysR substrate binding domain |
| 3 | PF00126.29 | 1.0 | 3 | 4037 | same-strand | Bacterial regulatory helix-turn-helix protein, lysR family |
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