ProsmORF-pred
Result : Q4JWU1
Protein Information
Information Type Description
Protein name 50S ribosomal protein L21
NCBI Accession ID CR931997.1
Organism Corynebacterium jeikeium (strain K411)
Left 677488
Right 677790
Strand +
Nucleotide Sequence ATGTACGCGATCGTCAAGACCGGCGGAAAGCAGTACAAGGTTGCCGAAGGTGACCTCGTCAAGGTCGAGAAGATCGAGGGTGAGCCGGGTTCGTCCGTGGCTCTCACCCCGGTTCTCGTCGTCGATGGCGCAAACGTCACCACCGGTGACAAGCTGGCATCTGTCAACGTCAACGCTGAGATCGTTGAGCATGTTCGTGGACCGAAGATCCGCGGCATGCACTACCGCAACAAGACCGGTTACAAGCGCCGCTTCGGCCACCGTCAGAGCCTCACGGTTCTGAAGGTCACCGGTATCAAGTAA
Sequence MYAIVKTGGKQYKVAEGDLVKVEKIEGEPGSSVALTPVLVVDGANVTTGDKLASVNVNAEIVEHVRGPKIRGMHYRNKTGYKRRFGHRQSLTVLKVTGIK
Source of smORF Swiss-Prot
Function This protein binds to 23S rRNA in the presence of protein L20. {ECO:0000255|HAMAP-Rule:MF_01363}.
Pubmed ID 15968079
Domain CDD:412347
Functional Category Ribosomal_protein
Uniprot ID Q4JWU1
ORF Length (Amino Acid) 100
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 450
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2007962 2008264 - NZ_LS483459.1 Corynebacterium jeikeium
2 794782 795084 + NC_015673.1 Corynebacterium resistens DSM 45100
3 925472 925774 - NZ_LT906481.1 Corynebacterium urealyticum
4 664405 664707 + NZ_CP046883.1 Corynebacterium anserum
5 1617105 1617407 - NC_012704.1 Corynebacterium kroppenstedtii DSM 44385
6 836119 836427 + NZ_CP006841.1 Corynebacterium lactis RW2-5
7 1207712 1208014 - NZ_CP042429.1 Corynebacterium nuruki S6-4
8 2473395 2473697 - NZ_CP006842.1 Corynebacterium glyciniphilum AJ 3170
9 706450 706755 + NZ_CP009248.1 Corynebacterium sphenisci DSM 44792
10 2472644 2472952 + NZ_CP068168.1 Corynebacterium amycolatum
11 1299907 1300215 - NZ_CP032788.1 Corynebacterium xerosis
12 840021 840323 + NC_021663.1 Corynebacterium terpenotabidum Y-11
13 2415477 2415782 - NC_004369.1 Corynebacterium efficiens YS-314
14 2172458 2172763 - NZ_CP009245.1 Corynebacterium aquilae DSM 44791
15 2147458 2147763 - NC_020506.1 Corynebacterium callunae DSM 20147
16 2223945 2224250 - NZ_CP009220.1 Corynebacterium deserti GIMN1.010
17 2655740 2656045 - NZ_AP017369.1 Corynebacterium suranareeae
18 2144280 2144585 - NZ_CP033896.1 Corynebacterium choanae
19 2257011 2257316 - NZ_CP015622.1 Corynebacterium crudilactis
20 2045074 2045379 - NZ_CP011545.1 Corynebacterium testudinoris
21 1562168 1562473 - NC_022198.1 Corynebacterium argentoratense DSM 44202
22 2029807 2030112 - NZ_CP011541.1 Corynebacterium epidermidicanis
23 735619 735924 + NZ_CP011312.1 Corynebacterium kutscheri
24 1734031 1734336 - NC_017301.2 Corynebacterium pseudotuberculosis C231
25 166557 166862 + NZ_CP069485.1 Corynebacterium glucuronolyticum
26 2679343 2679648 - NZ_CP011542.1 Corynebacterium mustelae
27 832323 832628 - NZ_LT906443.1 Corynebacterium ulcerans
28 1746728 1747033 - NZ_CP033897.1 Corynebacterium gerontici
29 564135 564440 + NZ_CP033898.1 Corynebacterium pseudopelargi
30 594669 594974 + NZ_CP035299.1 Corynebacterium pelargi
31 2412187 2412492 - NC_020302.1 Corynebacterium halotolerans YIM 70093 = DSM 44683
32 2200898 2201203 - NZ_LR698967.1 Corynebacterium ammoniagenes
33 2166395 2166700 - NZ_CP009251.1 Corynebacterium stationis
34 2188094 2188399 - NZ_CP004353.1 Corynebacterium vitaeruminis DSM 20294
35 1820431 1820736 - NZ_LR738855.1 Corynebacterium rouxii
36 1801633 1801938 - NZ_LN831026.1 Corynebacterium diphtheriae
37 1917305 1917610 - NZ_CP039247.1 Corynebacterium endometrii
38 2183064 2183369 - NC_021915.1 Corynebacterium maris DSM 45190
39 730918 731223 + NZ_CP009249.1 Corynebacterium phocae
40 1979291 1979596 - NZ_CP007790.1 Corynebacterium marinum DSM 44953
41 453638 453943 + NZ_LT906473.1 Corynebacterium cystitidis
42 1744035 1744340 - NZ_CP011546.1 Corynebacterium uterequi
43 1782690 1782995 - NZ_CP008944.1 Corynebacterium atypicum
44 1924586 1924891 - NZ_CP026947.1 Corynebacterium yudongzhengii
45 2088462 2088767 - NZ_CP006764.1 Corynebacterium doosanense CAU 212 = DSM 45436
46 1858691 1858996 - NZ_CP011311.1 Corynebacterium camporealensis
47 2056362 2056673 + NZ_CP029146.1 Rhodococcus ruber
48 1846917 1847222 + NZ_CP068161.1 Corynebacterium propinquum
49 6258566 6258814 - NZ_AP017900.1 Nocardia seriolae
50 2032022 2032327 - NZ_CP009247.1 Corynebacterium frankenforstense DSM 45800
51 2423400 2423711 + NZ_CP022208.1 Rhodococcus pyridinivorans
52 631506 631811 + NZ_LS483460.1 Corynebacterium minutissimum
53 2068420 2068725 - NC_012590.1 Corynebacterium aurimucosum ATCC 700975
54 2016820 2017131 + NZ_LT906450.1 Rhodococcus rhodochrous
55 2470808 2471056 + NZ_LR134352.1 Nocardia asteroides
56 2135701 2136006 + NZ_CP014635.1 Corynebacterium simulans
57 2001808 2002113 - NZ_CP009246.1 Corynebacterium flavescens
58 5099818 5100066 - NZ_CP041695.1 Nocardia otitidiscaviarum
59 2177303 2177608 - NZ_CP010827.1 Corynebacterium singulare
60 1126457 1126768 - NZ_LS483468.1 Rhodococcus coprophilus
61 730672 730977 + NZ_CP067012.1 Corynebacterium kefirresidentii
62 3909316 3909627 + NZ_CP015235.1 Rhodococcus fascians D188
63 1335495 1335806 + NZ_CP048813.1 Rhodococcus triatomae
64 3359777 3360088 - NZ_CP027793.1 Rhodococcus hoagii
65 1780165 1780413 + NZ_CP011853.1 Gordonia phthalatica
66 1351959 1352264 + NZ_CP038157.1 Corynebacterium sanguinis
67 2030555 2030860 - NZ_LT906467.1 Corynebacterium imitans
68 216645 216950 - NZ_LS483464.1 Corynebacterium renale
69 1496454 1496702 + NZ_CP018082.1 Nocardia mangyaensis
70 1601996 1602292 + NZ_CP009312.1 Lawsonella clevelandensis
71 3888968 3889279 - NZ_AP023172.1 Rhodococcus qingshengii
72 6063651 6063899 - NZ_AP023396.1 Nocardia wallacei
73 2190038 2190286 + NC_013441.1 Gordonia bronchialis DSM 43247
74 1257680 1257985 + NZ_CP015453.1 Dietzia psychralcaliphila
75 1732999 1733310 + NZ_CP007220.1 Mycobacteroides chelonae CCUG 47445
76 1779817 1780122 - NZ_CP026948.1 Corynebacterium liangguodongii
77 601866 602114 + NZ_CP033972.1 Gordonia insulae
78 4475746 4475994 - NZ_CP022088.2 Nocardia brasiliensis
79 1750252 1750557 - NZ_CP009215.1 Corynebacterium ureicelerivorans
80 2888104 2888415 + NZ_CP027114.1 Gordonia alkanivorans
81 1624768 1625016 + NZ_CP014955.1 Mycobacteroides abscessus
82 6165641 6165889 - NZ_CP026746.1 Nocardia cyriacigeorgica
83 1519670 1519918 + NC_006361.1 Nocardia farcinica IFM 10152
84 1757570 1757812 - NC_014168.1 Segniliparus rotundus DSM 44985
85 1281239 1281544 + NZ_CP015449.1 Dietzia lutea
86 1317794 1318099 + NZ_CP015961.1 Dietzia timorensis
87 1768381 1768629 + NZ_CP011530.1 Mycobacteroides immunogenum
88 2231580 2231828 + NC_016906.1 Gordonia polyisoprenivorans VH2
89 3705609 3705857 + NZ_CP012150.1 Mycobacterium goodii
90 1598358 1598606 + NZ_AP018165.1 [Mycobacterium] stephanolepidis
91 1487524 1487772 + NZ_CP024633.1 Mycobacteroides salmoniphilum
92 4710343 4710591 - NZ_LN831039.1 Mycolicibacterium smegmatis
93 4095096 4095344 - NZ_CP011269.1 Mycolicibacterium fortuitum
94 7846542 7846790 - NZ_AP022567.1 Mycolicibacterium mageritense
95 1485353 1485601 + NZ_CP010271.1 Mycobacteroides saopaulense
96 1771714 1772025 - NZ_AP022573.1 Mycobacterium saskatchewanense
97 1984604 1984909 - NZ_CP019688.1 Corynebacterium glaucum
98 1925991 1926242 + NZ_CP027433.1 Gordonia iterans
99 3282522 3282773 + NZ_AP022589.1 Mycolicibacter minnesotensis
100 1565031 1565273 - NZ_AP022603.1 Mycolicibacterium fallax
101 2481034 2481282 + NZ_CP020809.1 Mycobacterium dioxanotrophicus
102 3444323 3444634 + NZ_AP022606.1 Mycobacterium branderi
103 4662634 4662885 - NZ_CP025546.1 Mycobacterium paragordonae
104 978248 978499 + NZ_AP022609.1 Mycolicibacter hiberniae
105 3536188 3536436 + NZ_AP022579.1 Mycolicibacterium boenickei
106 3426027 3426269 + NZ_AP022598.1 Mycolicibacterium parafortuitum
107 3141140 3141451 + NZ_CP059694.1 Gordonia rubripertincta
108 4175810 4176061 - NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
109 5913899 5914150 - NZ_CP058277.1 Mycobacterium marinum
110 3046979 3047230 + NZ_AP022572.1 Mycobacterium shottsii
111 1079393 1079644 + NZ_AP022617.1 Mycolicibacterium monacense
112 2598003 2598254 - NZ_AP022590.1 Mycobacterium mantenii
113 1681950 1682264 + NC_022657.1 Actinoplanes friuliensis DSM 7358
114 3932261 3932503 - NZ_CP011491.1 Mycolicibacterium vaccae 95051
115 2628919 2629170 - NZ_AP022605.1 Mycobacterium doricum
116 3660993 3661244 - NZ_AP018164.1 Mycobacterium shigaense
117 3543490 3543813 - NZ_AP022618.1 Mycolicibacterium insubricum
118 18589 18837 + NZ_AP022565.1 Mycolicibacterium alvei
119 4889540 4889791 - NZ_CP043474.1 Mycobacterium grossiae
120 1868557 1868808 + NC_016946.1 Mycobacterium intracellulare ATCC 13950
121 617344 617658 - NZ_CP047156.1 Epidermidibacterium keratini
122 520784 521035 + NZ_AP022614.1 Mycobacterium parmense
123 1300433 1300675 + NZ_LR026975.1 Mycolicibacterium hassiacum DSM 44199
124 774963 775223 + NZ_AP022586.1 Mycolicibacterium litorale
125 700105 700347 + NZ_AP022563.1 Mycolicibacterium duvalii
126 461221 461472 - NZ_AP022562.1 Mycobacterium novum
127 1578199 1578450 + NC_015576.1 Mycolicibacter sinensis
128 1619807 1620058 + NC_016948.1 Mycobacterium paraintracellulare
129 199688 199930 - NZ_AP022583.1 Mycobacterium noviomagense
130 1590374 1590625 + NZ_CP023147.1 Mycobacterium marseillense
131 1228848 1229162 + NC_017093.1 Actinoplanes missouriensis 431
132 1632056 1632307 + NZ_CP009360.4 Mycobacterium avium subsp. hominissuis
133 1202395 1202646 - NC_022663.1 Mycobacterium kansasii ATCC 12478
134 2695760 2696011 - NZ_AP022581.1 Mycobacterium lacus
135 3847391 3847642 - NZ_LR130759.1 Mycobacterium basiliense
136 1464491 1464742 + NZ_AP022612.1 Mycolicibacterium confluentis
137 4215813 4216055 - NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
138 2851478 2851729 - NZ_CP011883.2 Mycobacterium haemophilum DSM 44634
139 5071317 5071628 - NZ_AP022588.1 Mycolicibacterium sediminis
140 3772208 3772459 + NZ_AP022615.1 Mycobacterium heidelbergense
141 4176180 4176431 + NZ_AP022599.1 Mycolicibacterium pulveris
142 1454094 1454345 + NZ_LT906469.1 Mycolicibacter terrae
143 1168699 1169007 + NC_015564.1 Hoyosella subflava DQS3-9A1
144 5734860 5735111 + NZ_AP022587.1 Mycobacterium stomatepiae
145 2314548 2314799 - NZ_AP022619.1 Mycobacterium paraseoulense
146 2444510 2444761 - NZ_AP022582.1 Mycobacterium seoulense
147 5485399 5485650 + NZ_AP022576.1 Mycobacterium florentinum
148 57385 57633 + NZ_AP022608.1 Mycolicibacterium gadium
149 2350541 2350789 - NZ_AP022601.1 Mycobacterium gallinarum
150 1541730 1541978 + NC_014158.1 Tsukamurella paurometabola DSM 20162
151 2133811 2134071 - NZ_AP022620.1 Mycolicibacterium anyangense
152 3898910 3899221 - NZ_AP022610.1 Mycolicibacterium madagascariense
153 3018025 3018267 - NZ_LT906483.1 Mycolicibacterium thermoresistibile
154 2904350 2904592 + NZ_AP022574.1 Mycolicibacterium psychrotolerans
155 3903661 3903912 - NZ_AP022613.1 Mycobacterium conspicuum
156 1720410 1720661 - NZ_CP029543.1 Mycobacterium leprae
157 4300052 4300294 - NZ_AP022570.1 Mycolicibacterium poriferae
158 1962861 1963112 + NZ_AP024310.1 Mycobacterium heckeshornense
159 2047285 2047599 - NZ_AP022871.1 Phytohabitans suffuscus
160 3676622 3676933 - NZ_AP022561.1 Mycolicibacterium aichiense
161 3978089 3978331 - NZ_LR134356.1 Mycolicibacterium aurum
162 883399 883650 + NZ_AP022575.1 Mycobacterium shinjukuense
163 4443322 4443573 + NZ_AP022568.1 Mycobacterium simiae
164 1358208 1358522 + NZ_CP023865.1 Actinoplanes teichomyceticus ATCC 31121
165 2654283 2654531 + NZ_AP022560.1 Mycolicibacterium moriokaense
166 2096039 2096290 - NZ_AP022616.1 Mycolicibacterium phocaicum
167 1656115 1656366 + NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
168 854466 854777 - NZ_CP016793.1 Lentzea guizhouensis
169 5754139 5754450 + NZ_AP022593.1 Mycolicibacterium arabiense
170 1661060 1661371 + NC_013235.1 Nakamurella multipartita DSM 44233
171 1717176 1717424 + NZ_CP019066.1 Tsukamurella tyrosinosolvens
172 6301691 6302005 - NZ_AP022870.1 Phytohabitans flavus
173 6185065 6185376 - NZ_AP022600.1 Mycolicibacterium tokaiense
174 1658512 1658763 + NZ_LR134355.1 Mycolicibacterium chitae
175 208050 208361 - NZ_AP022596.1 Mycolicibacterium helvum
176 4190015 4190329 - NZ_CP045309.1 Micromonospora terminaliae
177 5502753 5503067 - NC_014391.1 Micromonospora aurantiaca ATCC 27029
178 5970643 5970957 - NZ_CP058322.1 Micromonospora carbonacea
179 4815422 4815736 + NZ_CP061725.1 Micromonospora craniellae
180 5069746 5069997 + NZ_AP022577.1 Mycolicibacterium aubagnense
181 3988098 3988412 - NC_009380.1 Salinispora tropica CNB-440
182 1344420 1344728 + NZ_CP045929.1 Saccharopolyspora coralli
183 2803310 2803561 - NC_015848.1 Mycobacterium canettii CIPT 140010059
184 4563612 4563923 - NZ_AP022595.1 Mycolicibacterium sarraceniae
185 2740047 2740298 - NC_000962.3 Mycobacterium tuberculosis H37Rv
186 1564676 1564984 + NC_009142.1 Saccharopolyspora erythraea NRRL 2338
187 5006385 5006693 + NZ_CP061007.1 Saccharopolyspora spinosa
188 5055984 5056292 - NZ_CP031142.1 Saccharopolyspora pogona
189 2119791 2120099 + NC_015312.1 Pseudonocardia dioxanivorans CB1190
190 1770060 1770368 + NZ_CP007155.1 Kutzneria albida DSM 43870
191 1593271 1593582 - NZ_AP022569.1 Mycobacterium cookii
192 4697941 4698267 - NZ_AP023355.1 Actinocatenispora thailandica
193 2562049 2562312 + NZ_CP012752.1 Kibdelosporangium phytohabitans
194 5819903 5820217 - NC_013947.1 Stackebrandtia nassauensis DSM 44728
195 6277361 6277630 - NZ_CP008953.1 Amycolatopsis japonica
196 1485846 1486160 + NC_019673.1 Saccharothrix espanaensis DSM 44229
197 7168151 7168420 - NZ_CP016174.1 Amycolatopsis orientalis
198 1311102 1311413 + NZ_CP023445.1 Actinosynnema pretiosum
199 1329415 1329726 + NC_013093.1 Actinosynnema mirum DSM 43827
200 2156492 2156761 + NC_021252.1 Amycolatopsis keratiniphila
201 8595234 8595503 + NZ_CP015163.1 Amycolatopsis albispora
202 3277061 3277369 + NZ_CP053564.1 Pseudonocardia broussonetiae
203 1939577 1939840 + NZ_CP016353.1 Prauserella marina
204 2970472 2970780 - NZ_CP040635.1 Acidipropionibacterium jensenii
205 7394537 7394806 - NC_022116.1 Amycolatopsis mediterranei RB
206 3908709 3909017 - NC_015635.1 Microlunatus phosphovorus NM-1
207 1484770 1485084 + NZ_CP034550.1 Saccharothrix syringae
208 1308614 1308922 + NZ_CP022752.1 Actinopolyspora erythraea
209 1293744 1294058 + NC_013159.1 Saccharomonospora viridis DSM 43017
210 1489302 1489610 - NC_021064.1 Cutibacterium avidum 44067
211 1171529 1171780 + NZ_CP012507.1 Kocuria palustris
212 1580331 1580639 - NZ_LT593929.1 Propionibacterium freudenreichii
213 909691 909999 + NC_006085.1 Cutibacterium acnes KPA171202
214 5102282 5102587 - NZ_AP018920.1 Pseudonocardia autotrophica
215 1831955 1832266 + NZ_CP016076.1 Actinoalloteichus fjordicus
216 1444966 1445271 - NZ_CP031356.1 Brachybacterium saurashtrense
217 1297446 1297754 + NZ_LT906453.1 Dermatophilus congolensis
218 1735023 1735334 + NZ_CP022521.1 Actinoalloteichus hoggarensis
219 171481 171786 + NZ_CP014209.1 Isoptericola dokdonensis DS-3
220 73427 73735 + NZ_CP019400.1 Acidipropionibacterium acidipropionici
221 2169382 2169690 - NZ_CP025198.1 Acidipropionibacterium virtanenii
222 1148726 1149034 + NZ_CP013290.1 Janibacter indicus
223 1551276 1551584 + NC_014830.1 Intrasporangium calvum DSM 43043
224 1460092 1460409 + NC_007777.1 Frankia casuarinae
225 339819 340124 - NZ_CP022316.1 Brachybacterium avium
226 2178838 2179143 + NZ_CP023563.1 Brachybacterium vulturis
227 1868279 1868581 + NC_012669.1 Beutenbergia cavernae DSM 12333
228 1696742 1697047 + NZ_CP023564.1 Brachybacterium ginsengisoli
229 2045603 2045908 - NC_013172.1 Brachybacterium faecium DSM 4810
230 2227664 2227969 - NC_015588.1 Isoptericola variabilis 225
231 614076 614387 + NZ_LT985188.1 Micropruina glycogenica
232 1278906 1279214 + NZ_CP035504.1 Kocuria indica
233 2602567 2602875 + NZ_CP011112.1 Luteipulveratus mongoliensis
234 1181430 1181738 + NZ_LT906441.1 Cutibacterium granulosum
235 1223188 1223496 - NZ_CP044548.2 Janibacter melonis
236 2815400 2815702 + NZ_CP010028.1 Deinococcus radiopugnans
237 712219 712524 - NZ_LN849456.1 Devriesea agamarum
238 1739988 1740296 - NZ_LR134442.1 Propionibacterium australiense
239 3220237 3220542 - NZ_CP041694.1 Cellulosimicrobium cellulans
240 2092559 2092876 + NC_008278.1 Frankia alni ACN14a
241 3835395 3835715 - NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
242 492700 493002 + NC_015161.1 Deinococcus proteolyticus MRP
243 1271818 1272123 + NZ_LR131272.1 Arthrobacter agilis
244 1069053 1069358 + NZ_CP051884.1 Cellulomonas taurus
245 1781466 1781780 + NC_013510.1 Thermomonospora curvata DSM 43183
246 1932367 1932612 + NZ_LR134476.1 Trueperella bialowiezensis
247 266615 266920 + NZ_CP035495.1 Xylanimonas allomyrinae
248 2499842 2500162 - NZ_CP040752.1 Streptomyces rectiverticillatus
249 2739361 2739669 + NZ_CP033719.1 Propionibacterium acidifaciens
250 1936192 1936500 + NZ_CP025333.1 Brevibacterium aurantiacum
251 1048636 1048905 + NZ_CP033325.1 Georgenia faecalis
252 2441770 2442075 - NC_013530.1 Xylanimonas cellulosilytica DSM 15894
253 482959 483264 + NZ_CP018135.1 Neomicrococcus aestuarii
254 2405196 2405513 + NC_014666.1 Frankia inefficax
255 1762947 1763213 + NZ_CP026734.1 Brevibacterium linens
256 2363642 2363950 - NZ_CP038213.1 Ornithinimicrobium flavum
257 2134874 2135167 - NZ_CP031425.1 Microbacterium foliorum
258 2671514 2671816 + NC_012526.1 Deinococcus deserti VCD115
259 374941 375243 - NZ_CP021081.1 Deinococcus ficus
260 2951429 2951737 + NZ_LR214441.1 Tessaracoccus lapidicaptus
261 5130184 5130501 + NZ_CP023698.1 Streptomyces viridifaciens
262 2141253 2141561 + NZ_LT996886.1 Tessaracoccus timonensis
263 984431 984739 - NZ_CP035810.1 Brevibacterium luteolum
264 1628286 1628579 + NZ_CP031422.1 Microbacterium oxydans
265 2510576 2510896 - NZ_CP072827.1 Streptomyces mobaraensis NBRC 13819 = DSM 40847
266 1171243 1171548 + NZ_CP026952.1 Aeromicrobium chenweiae
267 801656 801964 + NZ_CP060789.1 Tessaracoccus defluvii
268 1175324 1175635 + NZ_CP061538.1 Rothia amarae
269 2604536 2604844 + NZ_CP065682.1 Brevibacterium casei
270 1069376 1069681 + NZ_CP045737.1 Aeromicrobium yanjiei
271 8480914 8481216 - NZ_CP045572.1 Nonomuraea nitratireducens
272 681468 681779 - NZ_CP036402.1 Egibacter rhizosphaerae
273 1136284 1136595 + NZ_CP056080.1 Rothia nasimurium
274 5017040 5017360 + NZ_CP023701.1 Streptomyces subrutilus
275 846286 846549 - NZ_CP034438.1 Flaviflexus salsibiostraticola
276 5703558 5703878 + NZ_CP032698.1 Streptomyces hundungensis
277 1221300 1221605 - NZ_CP011005.1 Psychromicrobium lacuslunae
278 2875374 2875688 - NC_014165.1 Thermobispora bispora DSM 43833
279 1819511 1819804 + NZ_CP049934.1 Leucobacter insecticola
280 4933982 4934302 + NZ_CP023692.1 Streptomyces vinaceus
281 2890251 2890499 - NC_010168.1 Renibacterium salmoninarum ATCC 33209
282 3082867 3083187 - NZ_CP027306.1 Streptomyces atratus
283 5741815 5742135 + NZ_CP011340.1 Streptomyces pristinaespiralis
284 828376 828684 + NZ_CP019606.1 Tessaracoccus aquimaris
285 2876787 2877107 - NZ_CP010407.1 Streptomyces vietnamensis
286 1091069 1091371 + NC_012803.1 Micrococcus luteus NCTC 2665
287 9262561 9262881 - NZ_CP016279.1 Streptomyces griseochromogenes
288 2448272 2448592 - NZ_CP029196.1 Streptomyces venezuelae
289 1782295 1782603 - NZ_CP015519.1 Syntrophotalea acetylenivorans
290 6203820 6204140 + NZ_CP060404.1 Streptomyces buecherae
291 4184674 4184982 - NZ_CP042430.1 Baekduia soli
292 6253819 6254139 + NZ_CP023688.1 Streptomyces rimosus
293 4230217 4230522 - NZ_CP018863.1 Arthrobacter crystallopoietes
294 190303 190548 - NZ_CP032630.1 Protaetiibacter intestinalis
295 5735932 5736252 - NZ_CP030862.1 Streptomyces globosus
296 3099504 3099824 - NZ_CP059991.1 Streptomyces gardneri
297 253282 253590 - NZ_CP019607.1 Tessaracoccus flavescens
298 574018 574326 - NZ_CP010802.1 Desulfuromonas soudanensis
299 2179627 2179938 + NZ_CP022753.1 Nocardiopsis gilva YIM 90087
300 2209394 2209714 - NZ_CP021080.1 Streptomyces pluripotens
301 5071113 5071433 + NZ_CP023202.1 Streptomyces xinghaiensis S187
302 3435932 3436252 - NZ_CP071139.1 Streptomyces nojiriensis
303 3385490 3385810 - NZ_CP020569.1 Streptomyces gilvosporeus
304 2843600 2843944 + NC_013739.1 Conexibacter woesei DSM 14684
305 1978101 1978406 - NZ_CP033081.1 Glutamicibacter nicotianae
306 1417001 1417306 - NZ_CP012117.1 Dermabacter vaginalis
307 741698 742003 - NZ_CP042260.1 Glutamicibacter halophytocola
308 2061233 2061538 - NC_014550.1 Glutamicibacter arilaitensis Re117
309 2317448 2317759 - NC_014643.1 Rothia dentocariosa ATCC 17931
310 1764560 1764880 - NC_016111.1 Streptomyces cattleya NRRL 8057 = DSM 46488
311 2667189 2667497 - NZ_CP013254.1 Kocuria flava
312 1655235 1655558 - NZ_CP009922.3 Streptomyces xiamenensis
313 1814440 1814745 - NZ_CP034412.1 Glutamicibacter creatinolyticus
314 1908761 1909084 - NZ_CP054938.1 Streptomyces harbinensis
315 6637749 6638069 + NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
316 5685410 5685730 + NZ_CP051006.1 Streptomyces griseofuscus
317 1462272 1462583 - NZ_LR134479.1 Rothia aeria
318 6543899 6544219 + NZ_CP017248.1 Streptomyces fodineus
319 4167174 4167494 - NZ_CP065050.1 Streptomyces solisilvae
320 2388453 2388773 - NZ_CP015866.1 Streptomyces parvulus
321 2612913 2613233 - NZ_CP023693.1 Streptomyces cinereoruber
322 6357850 6358170 + NZ_AP023440.1 Streptomyces glomeroaurantiacus
323 727903 728148 - NZ_CP007519.1 Trueperella pyogenes
324 2090691 2090999 - NZ_CP044427.1 Ornithinimicrobium pratense
325 1510982 1511302 - NZ_CP029254.1 Streptomyces spongiicola
326 1851748 1852068 - NZ_CP029188.1 Streptomyces tirandamycinicus
327 3723144 3723464 - NZ_CP034463.1 Streptomyces aquilus
328 4797355 4797675 + NZ_CP065253.1 Streptomyces clavuligerus
329 4951717 4952037 + NZ_CP034279.1 Streptomyces ficellus
330 2545481 2545801 - NZ_CP072931.1 Streptomyces auratus AGR0001
331 5194266 5194586 + NZ_CP022310.1 Streptomyces calvus
332 3277033 3277353 - NZ_CP023694.1 Streptomyces coeruleorubidus
333 4952212 4952532 + NC_020990.1 Streptomyces albidoflavus
334 5251390 5251710 + NZ_CP031742.1 Streptomyces koyangensis
335 45062 45376 + NZ_CP014989.1 Serinicoccus hydrothermalis
336 2633940 2634260 - NZ_CP023407.1 Streptomyces fungicidicus
337 1993153 1993464 - NZ_CP030126.1 Indioceanicola profundi
338 2414792 2415112 - NZ_CP020700.1 Streptomyces tsukubensis
339 2093868 2094188 - NZ_CP031194.1 Streptomyces paludis
340 2203179 2203499 - NZ_CP020563.1 Kitasatospora albolonga
341 2773418 2773738 - NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877
342 3029972 3030292 - NZ_CP023691.1 Streptomyces platensis
343 6785707 6786027 - NZ_CP051486.1 Streptomyces pratensis
344 5843755 5844075 + NC_010572.1 Streptomyces griseus subsp. griseus NBRC 13350
345 2657719 2658039 - NZ_CP023695.1 Streptomyces alboniger
346 2244084 2244404 - NZ_CP042266.1 Streptomyces qinzhouensis
347 1938984 1939304 - NZ_CP017316.1 Streptomyces rubrolavendulae
348 2063843 2064163 - NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
349 3529202 3529522 - NZ_CP047020.1 Streptomyces broussonetiae
350 5433045 5433374 + NZ_CP048882.1 Streptomyces bathyalis
351 2478152 2478472 - NZ_CP013738.1 Streptomyces globisporus C-1027
352 2386939 2387259 - NZ_AP023439.1 Streptomyces tuirus
353 2019724 2020038 - NZ_CP040887.1 Serinicoccus chungangensis
354 2415955 2416275 - NC_021177.1 Streptomyces fulvissimus DSM 40593
355 6705854 6706174 + NC_013929.1 Streptomyces scabiei 87.22
356 2999569 2999889 - NZ_CP021978.1 Streptomyces hawaiiensis
357 2958297 2958617 - NZ_CP019457.1 Streptomyces lydicus
358 5842634 5842954 + NZ_CP030073.1 Streptomyces cadmiisoli
359 296906 297214 + NZ_CP049253.1 Microbacterium amylolyticum
360 5879543 5879863 + NZ_CP034687.1 Streptomyces griseoviridis
361 6135981 6136301 + NZ_CP045643.1 Streptomyces fagopyri
362 2824372 2824665 + NZ_CP049255.1 Microbacterium endophyticum
363 3107306 3107626 - NZ_CP015098.1 Streptomyces qaidamensis
364 5462646 5462966 + NZ_LN831790.1 Streptomyces leeuwenhoekii
365 2578157 2578462 - NZ_CP068013.1 Paenarthrobacter ureafaciens
366 2422548 2422868 - NZ_CP029043.1 Streptomyces nigra
367 2775635 2775955 - NZ_CP063374.1 Streptomyces chromofuscus
368 8019217 8019519 - NC_013595.1 Streptosporangium roseum DSM 43021
369 5266111 5266431 + NZ_CP023702.1 Streptomyces nitrosporeus
370 3734043 3734363 - NZ_CP070326.1 Streptomyces noursei
371 575085 575393 - NZ_CP060716.1 Leucobacter denitrificans
372 3027129 3027449 - NZ_CP045096.1 Streptomyces phaeolivaceus
373 2143868 2144188 - NZ_CP024957.1 Streptomyces cavourensis
374 2295409 2295729 - NZ_CP070242.1 Streptomyces californicus
375 3151502 3151822 - NC_021985.1 Streptomyces collinus Tu 365
376 6563158 6563478 + NZ_CP022744.1 Streptomyces lincolnensis
377 2282853 2283173 - NZ_CP020570.1 Streptomyces violaceoruber
378 3605177 3605497 - NZ_CP023690.1 Streptomyces spectabilis
379 6281044 6281364 + NZ_CP032427.1 Streptomyces griseorubiginosus
380 3170905 3171225 - NZ_CP071839.1 Streptomyces cyanogenus
381 1798087 1798407 + NZ_CP063373.1 Streptomyces ferrugineus
382 1190394 1190705 + NZ_CP061539.1 Rothia terrae
383 642990 643292 - NZ_CP008802.1 Actinotignum schaalii
384 5786961 5787281 + NZ_CP026652.1 Streptomyces dengpaensis
385 6705491 6705811 + NZ_CP023699.1 Streptomyces kanamyceticus
386 3193329 3193649 - NZ_CP022685.1 Streptomyces formicae
387 2621940 2622188 + NZ_CP035491.1 Agromyces protaetiae
388 3489482 3489802 - NZ_CP034539.1 Streptomyces cyaneochromogenes
389 425821 426129 + NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
390 2741830 2742150 - NZ_CP010849.1 Streptomyces cyaneogriseus subsp. noncyanogenus
391 2627893 2628213 - NZ_CP023703.1 Streptomyces galilaeus
392 2003431 2003751 - NZ_CP032229.1 Streptomyces seoulensis
393 6529768 6530088 + NZ_CP023689.1 Streptomyces chartreusis
394 573374 573682 - NZ_CP060713.1 Nocardioides mesophilus
395 1212987 1213280 + NZ_CP031421.1 Microbacterium oleivorans
396 1992487 1992738 - NZ_CP044232.1 Microbacterium lushaniae
397 2034293 2034538 - NZ_CP038266.1 Microbacterium wangchenii
398 290168 290476 + NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
399 336678 336986 + NZ_CP025199.1 Bifidobacterium pseudocatenulatum
400 1878844 1879110 + NZ_CP018762.1 Microbacterium aurum
401 1867675 1867968 - NZ_CP035037.1 Leucobacter muris
402 3020112 3020405 + NZ_CP061344.1 Microbacterium hominis
403 2551082 2551387 - NC_014151.1 Cellulomonas flavigena DSM 20109
404 1322916 1323221 + NC_013521.1 Sanguibacter keddieii DSM 10542
405 134371 134616 + NZ_LR134350.1 Actinomyces howellii
406 2760620 2760925 - NZ_CP029642.1 Arthrobacter dokdonellae
407 2536600 2536896 - NZ_CP011502.1 Aeromicrobium erythreum
408 1849009 1849302 - NZ_CP044231.1 Microbacterium caowuchunii
409 2593058 2593363 - NZ_CP045529.1 Luteimicrobium xylanilyticum
410 1784663 1784971 - NZ_LS483423.1 Jonesia denitrificans
411 1779291 1779584 - NZ_CP064760.1 Microbacterium schleiferi
412 1216301 1216567 - NZ_CP017812.1 Boudabousia tangfeifanii
413 2037345 2037650 - NZ_CP013745.1 Arthrobacter alpinus
414 8445666 8445986 - NC_013131.1 Catenulispora acidiphila DSM 44928
415 1651891 1652202 + NC_013757.1 Geodermatophilus obscurus DSM 43160
416 456943 457251 + NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734
417 1660400 1660693 - NZ_CP031423.1 Microbacterium lemovicicum
418 1239768 1240013 - NZ_LR134357.1 Actinomyces israelii
419 1301054 1301359 + NC_015671.1 Cellulomonas gilvus ATCC 13127
420 1877726 1877974 + NZ_LR134363.1 Actinomyces slackii
421 319269 319577 + NZ_CP028341.1 Bifidobacterium adolescentis
422 2104052 2104360 + NZ_CP062938.1 Bifidobacterium eulemuris
423 712011 712319 - NZ_CP062948.1 Bifidobacterium lemurum
424 1482728 1483036 - NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214
425 1519886 1520194 - NZ_CP007287.1 Bifidobacterium coryneforme
426 1219779 1220042 - NZ_CP070228.1 Arcanobacterium phocisimile
427 1005823 1006086 + NZ_LS483427.1 Arcanobacterium haemolyticum
428 2120784 2121098 + NC_014758.1 Calditerrivibrio nitroreducens DSM 19672
429 1077579 1077827 + NZ_CP025227.1 Actinomyces wuliandei
430 2688248 2688553 - NC_015514.1 Cellulomonas fimi ATCC 484
431 2409611 2409913 + NZ_AP019307.1 Nocardioides baekrokdamisoli
432 179802 180110 + NZ_AP012322.1 Bifidobacterium angulatum DSM 20098 = JCM 7096
433 1569307 1569555 - NZ_CP066802.1 Actinomyces weissii
434 430919 431227 + NZ_CP010311.1 Geoalkalibacter subterraneus
435 466829 467077 + NZ_LR134477.1 Actinomyces viscosus
436 2642082 2642330 - NZ_CP066049.1 Actinomyces naeslundii
437 341086 341394 + NZ_AP012333.1 Parascardovia denticolens DSM 10105 = JCM 12538
438 1601486 1601734 - NZ_CP066060.1 Actinomyces oris
439 832017 832265 + NZ_CP020468.1 Actinomyces gaoshouyii
440 1519026 1519274 - NZ_CP053642.1 Actinomyces marmotae
441 1893085 1893402 + NZ_CP029353.1 Azospirillum thermophilum
442 2913963 2914211 - NZ_CP014228.1 Actinomyces radicidentis
443 683709 683975 - NZ_LT635457.1 Actinomyces pacaensis
444 2244227 2244469 + NZ_CP013979.1 Agromyces aureus
445 1132227 1132475 + NZ_CP039292.1 Actinomyces procaprae
446 3948895 3949197 - NZ_CP009896.1 Pimelobacter simplex
447 1917518 1917829 + NZ_CP021255.1 Desulfobulbus oralis
448 333560 333859 - NZ_CP038436.1 Nocardioides seonyuensis
449 2949120 2949431 - NC_006138.1 Desulfotalea psychrophila LSv54
450 1368382 1368687 + NZ_CP039291.1 Cellulomonas shaoxiangyii
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_015673.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF01018.24 0.98 441 408 same-strand GTP1/OBG
2 PF09269.13 0.96 431 407 same-strand Domain of unknown function (DUF1967)
3 PF01926.25 0.97 437 409.0 same-strand 50S ribosome-binding GTPase
4 PF01016.21 1.0 450 18.0 same-strand Ribosomal L27 protein
5 PF10150.11 0.88 398 255.0 same-strand Ribonuclease E/G family
6 PF00696.30 0.76 341 1945 same-strand Amino acid kinase family
7 PF01472.22 0.71 319 1965 same-strand PUA domain
++ More..